Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:99891338-100832247

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35437 10 99902998 to 99925536 22538 + lncRNA gene predicted gene, 35437
Tssr95552 10 99913129 to 99913145 16 + TSS region transcription start site region 95552
Gm17870 10 99988620 to 99989777 1157 + pseudogene predicted gene, 17870
Cpgi2157 10 100015381 to 100016718 1337 CpG island CpG island 2157
Kitl 10 100015635 to 100100416 84781 + protein coding gene kit ligand
Tssr95553 10 100015817 to 100015833 16 + TSS region transcription start site region 95553
Tssr95554 10 100019284 to 100019289 5 + TSS region transcription start site region 95554
Tssr95555 10 100027060 to 100027077 17 + TSS region transcription start site region 95555
Tssr95556 10 100038128 to 100038136 8 + TSS region transcription start site region 95556
Tssr95557 10 100050850 to 100050855 5 + TSS region transcription start site region 95557
Tssr95558 10 100076294 to 100076298 4 + TSS region transcription start site region 95558
Tssr95559 10 100096519 to 100096523 4 + TSS region transcription start site region 95559
Tssr95560 10 100097023 to 100097035 12 + TSS region transcription start site region 95560
Tssr95561 10 100098136 to 100098154 18 + TSS region transcription start site region 95561
Tssr95562 10 100098574 to 100098591 17 + TSS region transcription start site region 95562
Tssr95563 10 100099064 to 100099082 18 + TSS region transcription start site region 95563
Tssr95564 10 100099165 to 100099182 17 + TSS region transcription start site region 95564
Tssr95565 10 100099825 to 100099841 16 + TSS region transcription start site region 95565
Igf1sl2 10 100100416 to 87858265 -12242151 QTL IGF-1 serum levels 2
Gm35533 10 100129868 to 100144126 14258 - lincRNA gene predicted gene, 35533
Gm22918 10 100139501 to 100139610 109 + miRNA gene predicted gene, 22918
Gm25287 10 100144254 to 100144363 109 + miRNA gene predicted gene, 25287
mwfh 10 100181141 to 100181274 133 QTL modifier of white forlock hypopigmentation
D10Mit178 10 100181141 to 100181274 133 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 178
Gm47627 10 100203874 to 100204342 468 - unclassified gene predicted gene, 47627
Gm8689 10 100297999 to 100298643 644 - pseudogene predicted gene 8689
Gm9476 10 100306535 to 100307185 650 - pseudogene predicted gene 9476
Gm47632 10 100317024 to 100320270 3246 - pseudogene predicted gene, 47632
Gm47628 10 100320313 to 100321425 1112 - pseudogene predicted gene, 47628
Gm47630 10 100321102 to 100321371 269 + pseudogene predicted gene, 47630
Gm4898 10 100325455 to 100326086 631 + pseudogene predicted gene 4898
Gm8701 10 100330549 to 100331191 642 + pseudogene predicted gene 8701
Gm4301 10 100335676 to 100336589 913 + protein coding gene predicted gene 4301
Gm4302 10 100340836 to 100341762 926 + protein coding gene predicted gene 4302
Gm4303 10 100345972 to 100346881 909 + protein coding gene predicted gene 4303
Gm4305 10 100351093 to 100352002 909 + protein coding gene predicted gene 4305
Gm8711 10 100356246 to 100356888 642 + pseudogene predicted gene 8711
Gm4307 10 100361338 to 100362247 909 + protein coding gene predicted gene 4307
Gm4308 10 100366529 to 100367173 644 + pseudogene predicted gene 4308
Gm4310 10 100371480 to 100372124 644 - pseudogene predicted gene 4310
Gm47631 10 100372863 to 100383831 10968 - unclassified non-coding RNA gene predicted gene, 47631
Gm8723 10 100376684 to 100377326 642 - pseudogene predicted gene 8723
Gm4312 10 100381647 to 100382560 913 - protein coding gene predicted gene 4312
Gm4781 10 100396413 to 100397063 650 - pseudogene predicted gene 4781
Gm47673 10 100432938 to 100433569 631 - unclassified gene predicted gene, 47673
Tmtc3 10 100443902 to 100487347 43445 - protein coding gene transmembrane and tetratricopeptide repeat containing 3
Tssr99138 10 100444983 to 100444997 14 - TSS region transcription start site region 99138
Tssr99139 10 100445036 to 100445040 4 - TSS region transcription start site region 99139
Tssr95566 10 100485402 to 100485450 48 + TSS region transcription start site region 95566
Cpgi2158 10 100487025 to 100487925 900 CpG island CpG island 2158
Tssr99140 10 100487271 to 100487288 17 - TSS region transcription start site region 99140
Tssr99141 10 100487291 to 100487311 20 - TSS region transcription start site region 99141
Tssr99142 10 100487316 to 100487357 41 - TSS region transcription start site region 99142
Cep290 10 100487548 to 100573665 86117 + protein coding gene centrosomal protein 290
Tssr95567 10 100487573 to 100487633 60 + TSS region transcription start site region 95567
Tssr95568 10 100544391 to 100544433 42 + TSS region transcription start site region 95568
4930430F08Rik 10 100572274 to 100589387 17113 - protein coding gene RIKEN cDNA 4930430F08 gene
Gm47956 10 100577426 to 100583711 6285 + unclassified non-coding RNA gene predicted gene, 47956
Cpgi2159 10 100588844 to 100589384 540 CpG island CpG island 2159
Tssr95569 10 100589110 to 100589131 21 + TSS region transcription start site region 95569
Tssr99143 10 100589205 to 100589269 64 - TSS region transcription start site region 99143
Tssr99144 10 100590413 to 100590426 13 - TSS region transcription start site region 99144
Tssr99145 10 100590427 to 100590432 5 - TSS region transcription start site region 99145
Tssr3339 10 100590437 to 100590445 8 - TSS region transcription start site region 3339
1700017N19Rik 10 100590511 to 100618391 27880 + protein coding gene RIKEN cDNA 1700017N19 gene
Tssr95570 10 100590522 to 100590533 11 + TSS region transcription start site region 95570
Tssr95571 10 100592365 to 100592382 17 + TSS region transcription start site region 95571
Tssr95572 10 100592386 to 100592406 20 + TSS region transcription start site region 95572
Cpgi2160 10 100612820 to 100613001 181 CpG island CpG island 2160
Gm47325 10 100651630 to 100651942 312 + pseudogene predicted gene, 47325
Gm35722 10 100708375 to 100741635 33260 - lincRNA gene predicted gene, 35722
Tssr95573 10 100820894 to 100820895 1 + TSS region transcription start site region 95573