Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:98961941-100152090

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp2b1 10 98914406 to 99026143 111737 + protein coding gene ATPase, Ca++ transporting, plasma membrane 1
Tssr95524 10 98986935 to 98986962 27 + TSS region transcription start site region 95524
Tssr95525 10 98987073 to 98987112 39 + TSS region transcription start site region 95525
Tssr95526 10 98990497 to 98990512 15 + TSS region transcription start site region 95526
Tssr95527 10 98994896 to 98994901 5 + TSS region transcription start site region 95527
Tssr95528 10 99000787 to 99000823 36 + TSS region transcription start site region 95528
Tssr95529 10 99009480 to 99009492 12 + TSS region transcription start site region 95529
Tssr95530 10 99013280 to 99013288 8 + TSS region transcription start site region 95530
Tssr95531 10 99013910 to 99013959 49 + TSS region transcription start site region 95531
Tssr95532 10 99023408 to 99023428 20 + TSS region transcription start site region 95532
Tssr95533 10 99023437 to 99023457 20 + TSS region transcription start site region 95533
Tssr95534 10 99023675 to 99023687 12 + TSS region transcription start site region 95534
Tssr95535 10 99025411 to 99025421 10 + TSS region transcription start site region 95535
Gm48761 10 99039472 to 99041443 1971 + unclassified gene predicted gene, 48761
Gm48768 10 99105791 to 99108080 2289 - bidirectional promoter lncRNA gene predicted gene, 48768
Cpgi2152 10 99106703 to 99108467 1764 CpG island CpG island 2152
Poc1b 10 99107036 to 99198074 91038 + protein coding gene POC1 centriolar protein B
Tssr95536 10 99107070 to 99107132 62 + TSS region transcription start site region 95536
Tssr95537 10 99107148 to 99107189 41 + TSS region transcription start site region 95537
Tssr95538 10 99107511 to 99107531 20 + TSS region transcription start site region 95538
Tssr99112 10 99108029 to 99108085 56 - TSS region transcription start site region 99112
Tssr95539 10 99108138 to 99108206 68 + TSS region transcription start site region 95539
Galnt4 10 99108159 to 99113247 5088 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 4
Cpgi2153 10 99109549 to 99109756 207 CpG island CpG island 2153
Tssr99113 10 99117150 to 99117154 4 - TSS region transcription start site region 99113
Phxr2 10 99125167 to 99126325 1158 - protein coding gene per-hexamer repeat gene 2
Tssr99114 10 99132286 to 99132303 17 - TSS region transcription start site region 99114
Tssr99115 10 99132329 to 99132334 5 - TSS region transcription start site region 99115
Tssr99116 10 99132368 to 99132393 25 - TSS region transcription start site region 99116
Tssr99117 10 99132402 to 99132430 28 - TSS region transcription start site region 99117
Gm16239 10 99179184 to 99184610 5426 - antisense lncRNA gene predicted gene 16239
Tssr95540 10 99189486 to 99189495 9 + TSS region transcription start site region 95540
D10Mit244 10 99193124 to 99193246 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 244
Gm34574 10 99216442 to 99228906 12464 - lincRNA gene predicted gene, 34574
Tssr99118 10 99232602 to 99232620 18 - TSS region transcription start site region 99118
Gm48884 10 99232794 to 99237616 4822 - lincRNA gene predicted gene, 48884
Gm34777 10 99233074 to 99239013 5939 + lincRNA gene predicted gene, 34777
Tssr95541 10 99233095 to 99233109 14 + TSS region transcription start site region 95541
Tssr99119 10 99241925 to 99241934 9 - TSS region transcription start site region 99119
Tssr99120 10 99241939 to 99241970 31 - TSS region transcription start site region 99120
Cpgi2154 10 99261246 to 99262380 1134 CpG island CpG island 2154
Tssr95542 10 99261551 to 99261617 66 + TSS region transcription start site region 95542
Tssr99121 10 99261709 to 99261726 17 - TSS region transcription start site region 99121
Tssr95543 10 99261869 to 99261891 22 + TSS region transcription start site region 95543
Cpgi2155 10 99262857 to 99264697 1840 CpG island CpG island 2155
Tssr99122 10 99263046 to 99263085 39 - TSS region transcription start site region 99122
Tssr95544 10 99263224 to 99263240 16 + TSS region transcription start site region 95544
Dusp6 10 99263231 to 99267489 4258 + protein coding gene dual specificity phosphatase 6
Tssr95545 10 99263294 to 99263314 20 + TSS region transcription start site region 95545
Tssr95546 10 99266124 to 99266150 26 + TSS region transcription start site region 95546
Tssr95547 10 99267198 to 99267202 4 + TSS region transcription start site region 95547
Gm34921 10 99267686 to 99270446 2760 - lincRNA gene predicted gene, 34921
Gm48089 10 99267896 to 99279084 11188 + lincRNA gene predicted gene, 48089
Tssr95548 10 99269973 to 99269977 4 + TSS region transcription start site region 95548
Tssr99123 10 99270442 to 99270448 6 - TSS region transcription start site region 99123
B530045E10Rik 10 99298888 to 99423047 124159 + lincRNA gene RIKEN cDNA B530045E10 gene
Tssr95549 10 99299089 to 99299093 4 + TSS region transcription start site region 95549
Tssr95550 10 99306612 to 99306617 5 + TSS region transcription start site region 95550
Tssr99124 10 99430823 to 99430831 8 - TSS region transcription start site region 99124
Tssr95551 10 99443699 to 99443733 34 + TSS region transcription start site region 95551
Tssr3335 10 99443869 to 99443878 9 + TSS region transcription start site region 3335
Gad1-ps 10 99444044 to 99445819 1775 + pseudogene glutamate decarboxylase 1, pseudogene
Gm35035 10 99452654 to 99460230 7576 - lincRNA gene predicted gene, 35035
Gm34983 10 99459689 to 99488610 28921 + lincRNA gene predicted gene, 34983
Tssr99125 10 99460222 to 99460239 17 - TSS region transcription start site region 99125
Tssr99126 10 99461580 to 99461605 25 - TSS region transcription start site region 99126
Tssr99127 10 99461752 to 99461763 11 - TSS region transcription start site region 99127
Tssr3336 10 99463204 to 99463214 10 + TSS region transcription start site region 3336
Tssr3337 10 99467276 to 99467298 22 - TSS region transcription start site region 3337
Tssr99128 10 99467308 to 99467386 78 - TSS region transcription start site region 99128
Tssr99129 10 99467662 to 99467674 12 - TSS region transcription start site region 99129
D10Mit12 10 99473556 to 99473795 239 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 12
Lith7 10 99473556 to 99473795 239 QTL lithogenic gene 7
Lmr32f 10 99473556 to 99473795 239 QTL leishmaniasis resistance 32f
Lmr32e 10 99473556 to 99473795 239 QTL leishmaniasis resistance 32e
Lmr32d 10 99473556 to 99473795 239 QTL leishmaniasis resistance 32d
Lmr32b 10 99473556 to 99473795 239 QTL leishmaniasis resistance 32b
Lmr32a 10 99473556 to 99473795 239 QTL leishmaniasis resistance 32a
Gm48085 10 99537622 to 99538069 447 - pseudogene predicted gene, 48085
Adip24 10 99556941 to 99557090 149 QTL adiposity 24
D10Mit96 10 99556941 to 99557090 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 96
Gm20110 10 99609171 to 99658134 48963 + lincRNA gene predicted gene, 20110
Gm18409 10 99638731 to 99641920 3189 - pseudogene predicted gene, 18409
Gm35101 10 99669514 to 99675623 6109 + lincRNA gene predicted gene, 35101
Tssr3338 10 99693126 to 99693128 2 + TSS region transcription start site region 3338
Gm47578 10 99719143 to 99891158 172015 + antisense lncRNA gene predicted gene, 47578
Csl 10 99757706 to 99759658 1952 - protein coding gene citrate synthase like
Cpgi2156 10 99759130 to 99759691 561 CpG island CpG island 2156
Tssr99130 10 99759450 to 99759469 19 - TSS region transcription start site region 99130
Tssr99131 10 99759475 to 99759492 17 - TSS region transcription start site region 99131
Tssr99132 10 99759503 to 99759513 10 - TSS region transcription start site region 99132
Tssr99133 10 99759593 to 99759601 8 - TSS region transcription start site region 99133
Tssr99134 10 99759605 to 99759616 11 - TSS region transcription start site region 99134
Tssr99135 10 99759618 to 99759629 11 - TSS region transcription start site region 99135
Tssr99136 10 99759636 to 99759652 16 - TSS region transcription start site region 99136
Tssr99137 10 99759663 to 99759674 11 - TSS region transcription start site region 99137
Gm35206 10 99772022 to 99830556 58534 + antisense lncRNA gene predicted gene, 35206
D10Mit1011 10 99799238 to 99799396 158 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1011
Gm47579 10 99865372 to 99866020 648 - pseudogene predicted gene, 47579
Gm35437 10 99902998 to 99925536 22538 + lncRNA gene predicted gene, 35437
Tssr95552 10 99913129 to 99913145 16 + TSS region transcription start site region 95552
Gm17870 10 99988620 to 99989777 1157 + pseudogene predicted gene, 17870
Cpgi2157 10 100015381 to 100016718 1337 CpG island CpG island 2157
Kitl 10 100015635 to 100100416 84781 + protein coding gene kit ligand
Tssr95553 10 100015817 to 100015833 16 + TSS region transcription start site region 95553
Tssr95554 10 100019284 to 100019289 5 + TSS region transcription start site region 95554
Tssr95555 10 100027060 to 100027077 17 + TSS region transcription start site region 95555
Tssr95556 10 100038128 to 100038136 8 + TSS region transcription start site region 95556
Tssr95557 10 100050850 to 100050855 5 + TSS region transcription start site region 95557
Tssr95558 10 100076294 to 100076298 4 + TSS region transcription start site region 95558
Tssr95559 10 100096519 to 100096523 4 + TSS region transcription start site region 95559
Tssr95560 10 100097023 to 100097035 12 + TSS region transcription start site region 95560
Tssr95561 10 100098136 to 100098154 18 + TSS region transcription start site region 95561
Tssr95562 10 100098574 to 100098591 17 + TSS region transcription start site region 95562
Tssr95563 10 100099064 to 100099082 18 + TSS region transcription start site region 95563
Tssr95564 10 100099165 to 100099182 17 + TSS region transcription start site region 95564
Tssr95565 10 100099825 to 100099841 16 + TSS region transcription start site region 95565
Igf1sl2 10 100100416 to 87858265 -12242151 QTL IGF-1 serum levels 2
Gm35533 10 100129868 to 100144126 14258 - lincRNA gene predicted gene, 35533
Gm22918 10 100139501 to 100139610 109 + miRNA gene predicted gene, 22918
Gm25287 10 100144254 to 100144363 109 + miRNA gene predicted gene, 25287
Lmr32 10 116384957 to 99473556 -16911401 QTL leishmaniasis resistance 32
Lmr32c 10 116384957 to 99473556 -16911401 QTL leishmaniasis resistance 32c