Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:9893096-11223125

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stxbp5 10 9755547 to 9901079 145532 - protein coding gene syntaxin binding protein 5 (tomosyn)
Tssr96678 10 9898323 to 9898328 5 - TSS region transcription start site region 96678
Cpgi1290 10 9900294 to 9901683 1389 CpG island CpG island 1290
Tssr96679 10 9901160 to 9901250 90 - TSS region transcription start site region 96679
Tssr92341 10 9901290 to 9901303 13 + TSS region transcription start site region 92341
Gm46210 10 9901313 to 9918843 17530 + lincRNA gene predicted gene, 46210
Tssr3135 10 9976643 to 9976665 22 + TSS region transcription start site region 3135
Tssr96680 10 9996303 to 9996307 4 - TSS region transcription start site region 96680
Gm48282 10 10040920 to 10041426 506 + pseudogene predicted gene, 48282
Gm48278 10 10083943 to 10092295 8352 + lincRNA gene predicted gene, 48278
Gm48281 10 10100420 to 10110099 9679 - lincRNA gene predicted gene, 48281
Gm25682 10 10100953 to 10101116 163 + snRNA gene predicted gene, 25682
Gm48279 10 10122486 to 10126891 4405 + lincRNA gene predicted gene, 48279
Gm48280 10 10131272 to 10131640 368 + pseudogene predicted gene, 48280
Gm28905 10 10168619 to 9975947 -192672 + lincRNA gene predicted gene 28905
Tssr92342 10 10184591 to 10184614 23 + TSS region transcription start site region 92342
Gm44555 10 10193524 to 10193671 147 + pseudogene predicted gene 44555
Tssr3136 10 10203121 to 10203125 4 + TSS region transcription start site region 3136
Gm31904 10 10230736 to 10234850 4114 - lincRNA gene predicted gene, 31904
Sysbp1 10 10232521 to 87565233 77332712 QTL systolic blood pressure 1
D10Mit123 10 10232521 to 10232663 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 123
Tssr96681 10 10234828 to 10234837 9 - TSS region transcription start site region 96681
Tssr96682 10 10234844 to 10234854 10 - TSS region transcription start site region 96682
Tssr96683 10 10234873 to 10234882 9 - TSS region transcription start site region 96683
Tssr96684 10 10234908 to 10234915 7 - TSS region transcription start site region 96684
Tssr92343 10 10234968 to 10234974 6 + TSS region transcription start site region 92343
4930598N05Rik 10 10234974 to 10258698 23724 + lncRNA gene RIKEN cDNA 4930598N05 gene
Tssr92344 10 10234987 to 10234994 7 + TSS region transcription start site region 92344
Tssr92345 10 10234998 to 10235023 25 + TSS region transcription start site region 92345
Gm48324 10 10270402 to 10296929 26527 - lincRNA gene predicted gene, 48324
Tssr96685 10 10296922 to 10296935 13 - TSS region transcription start site region 96685
Tssr96686 10 10296962 to 10296967 5 - TSS region transcription start site region 96686
D10Mit280 10 10310969 to 10311080 111 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 280
D10Mit280.1 10 10311108 to 10311254 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 280.1
Tssr3137 10 10334648 to 10334653 5 - TSS region transcription start site region 3137
Adgb 10 10335703 to 10472326 136623 - protein coding gene androglobin
Tssr96687 10 10339728 to 10339730 2 - TSS region transcription start site region 96687
Tssr92346 10 10343097 to 10343101 4 + TSS region transcription start site region 92346
Gm15568 10 10343115 to 10344327 1212 + pseudogene predicted gene 15568
Tssr96688 10 10344733 to 10344736 3 - TSS region transcription start site region 96688
D10Mit312 10 10390607 to 10390729 122 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-312
Gm48326 10 10465414 to 10465534 120 - pseudogene predicted gene, 48326
Tssr96689 10 10472393 to 10472405 12 - TSS region transcription start site region 96689
Tssr96690 10 10475033 to 10475053 20 - TSS region transcription start site region 96690
Tssr96691 10 10475067 to 10475083 16 - TSS region transcription start site region 96691
D10Mit245 10 10516079 to 10516177 98 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 245
Rab32 10 10545039 to 10558207 13168 - protein coding gene RAB32, member RAS oncogene family
Cpgi1291 10 10557671 to 10558345 674 CpG island CpG island 1291
Tssr96692 10 10558096 to 10558125 29 - TSS region transcription start site region 96692
Tssr96693 10 10558131 to 10558190 59 - TSS region transcription start site region 96693
Tssr96694 10 10558199 to 10558250 51 - TSS region transcription start site region 96694
Gm5177 10 10605945 to 10616313 10368 + pseudogene predicted pseudogene 5177
Gm23601 10 10663154 to 10663284 130 + snoRNA gene predicted gene, 23601
Gm10944 10 10681348 to 10681858 510 + protein coding gene predicted gene 10944
Grm1 10 10686059 to 11082356 396297 - protein coding gene glutamate receptor, metabotropic 1
Tssr96695 10 10688943 to 10688956 13 - TSS region transcription start site region 96695
Cpgi1292 10 10689018 to 10689682 664 CpG island CpG island 1292
Gm48400 10 10730629 to 10731126 497 + pseudogene predicted gene, 48400
Tssr92347 10 10748965 to 10748974 9 + TSS region transcription start site region 92347
4930567K20Rik 10 10751046 to 10758131 7085 + antisense lncRNA gene RIKEN cDNA 4930567K20 gene
Tssr92348 10 10751073 to 10751112 39 + TSS region transcription start site region 92348
Tssr92349 10 10751120 to 10751130 10 + TSS region transcription start site region 92349
Cpgi1293 10 10936334 to 10936574 240 CpG island CpG island 1293
Gm48406 10 11035916 to 11036144 228 + pseudogene predicted gene, 48406
Tssr96696 10 11045585 to 11045596 11 - TSS region transcription start site region 96696
Cpgi1294 10 11080228 to 11080854 626 CpG island CpG island 1294
Tssr96697 10 11080987 to 11081023 36 - TSS region transcription start site region 96697
Tssr96698 10 11081092 to 11081132 40 - TSS region transcription start site region 96698
Cpgi1295 10 11081577 to 11081954 377 CpG island CpG island 1295
Tssr96699 10 11082287 to 11082372 85 - TSS region transcription start site region 96699
Cpgi1296 10 11149164 to 11150084 920 CpG island CpG island 1296
Tssr92350 10 11149387 to 11149400 13 + TSS region transcription start site region 92350
Tssr92351 10 11149406 to 11149417 11 + TSS region transcription start site region 92351
Shprh 10 11149427 to 11217595 68168 + protein coding gene SNF2 histone linker PHD RING helicase
Tssr92352 10 11149449 to 11149513 64 + TSS region transcription start site region 92352
Gm16577 10 11212280 to 11212979 699 - antisense lncRNA gene predicted gene 16577