Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:98722073-99252112

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr99102 10 98744286 to 98744291 5 - TSS region transcription start site region 99102
Tssr99103 10 98744305 to 98744314 9 - TSS region transcription start site region 99103
Tssr95507 10 98781249 to 98781254 5 + TSS region transcription start site region 95507
D10Mit202 10 98785631 to 98785892 261 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 202
Tssr95508 10 98798911 to 98798922 11 + TSS region transcription start site region 95508
Gm40750 10 98807136 to 98809465 2329 + lncRNA gene predicted gene, 40750
Gm34346 10 98834007 to 98882737 48730 - lncRNA gene predicted gene, 34346
Tssr99104 10 98857092 to 98857096 4 - TSS region transcription start site region 99104
Tssr95509 10 98878065 to 98878073 8 + TSS region transcription start site region 95509
Tssr99105 10 98880113 to 98880142 29 - TSS region transcription start site region 99105
Tssr95510 10 98880354 to 98880379 25 + TSS region transcription start site region 95510
Tssr95511 10 98880390 to 98880402 12 + TSS region transcription start site region 95511
Tssr99106 10 98880806 to 98880818 12 - TSS region transcription start site region 99106
Tssr99107 10 98898005 to 98898028 23 - TSS region transcription start site region 99107
D10Mit290 10 98898947 to 98899069 122 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 290
Cpgi2151 10 98913432 to 98915964 2532 CpG island CpG island 2151
Tssr99108 10 98913766 to 98913770 4 - TSS region transcription start site region 99108
Tssr99109 10 98913948 to 98913953 5 - TSS region transcription start site region 99109
Tssr99110 10 98914155 to 98914168 13 - TSS region transcription start site region 99110
Atp2b1 10 98914406 to 99026143 111737 + protein coding gene ATPase, Ca++ transporting, plasma membrane 1
Tssr95512 10 98914413 to 98914418 5 + TSS region transcription start site region 95512
Tssr95513 10 98914426 to 98914437 11 + TSS region transcription start site region 95513
Tssr95514 10 98914561 to 98914576 15 + TSS region transcription start site region 95514
Tssr95515 10 98914639 to 98914721 82 + TSS region transcription start site region 95515
Tssr99111 10 98914989 to 98915009 20 - TSS region transcription start site region 99111
Tssr95516 10 98915117 to 98915172 55 + TSS region transcription start site region 95516
Tssr95517 10 98915181 to 98915192 11 + TSS region transcription start site region 95517
Tssr95518 10 98916109 to 98916127 18 + TSS region transcription start site region 95518
Tssr95519 10 98917553 to 98917559 6 + TSS region transcription start site region 95519
Tssr95520 10 98920577 to 98920583 6 + TSS region transcription start site region 95520
Tssr95521 10 98921020 to 98921029 9 + TSS region transcription start site region 95521
Tssr95522 10 98931136 to 98931145 9 + TSS region transcription start site region 95522
Tssr95523 10 98945679 to 98945684 5 + TSS region transcription start site region 95523
Tssr95524 10 98986935 to 98986962 27 + TSS region transcription start site region 95524
Tssr95525 10 98987073 to 98987112 39 + TSS region transcription start site region 95525
Tssr95526 10 98990497 to 98990512 15 + TSS region transcription start site region 95526
Tssr95527 10 98994896 to 98994901 5 + TSS region transcription start site region 95527
Tssr95528 10 99000787 to 99000823 36 + TSS region transcription start site region 95528
Tssr95529 10 99009480 to 99009492 12 + TSS region transcription start site region 95529
Tssr95530 10 99013280 to 99013288 8 + TSS region transcription start site region 95530
Tssr95531 10 99013910 to 99013959 49 + TSS region transcription start site region 95531
Tssr95532 10 99023408 to 99023428 20 + TSS region transcription start site region 95532
Tssr95533 10 99023437 to 99023457 20 + TSS region transcription start site region 95533
Tssr95534 10 99023675 to 99023687 12 + TSS region transcription start site region 95534
Tssr95535 10 99025411 to 99025421 10 + TSS region transcription start site region 95535
Gm48761 10 99039472 to 99041443 1971 + unclassified gene predicted gene, 48761
Gm48768 10 99105791 to 99108080 2289 - bidirectional promoter lncRNA gene predicted gene, 48768
Cpgi2152 10 99106703 to 99108467 1764 CpG island CpG island 2152
Poc1b 10 99107036 to 99198074 91038 + protein coding gene POC1 centriolar protein B
Tssr95536 10 99107070 to 99107132 62 + TSS region transcription start site region 95536
Tssr95537 10 99107148 to 99107189 41 + TSS region transcription start site region 95537
Tssr95538 10 99107511 to 99107531 20 + TSS region transcription start site region 95538
Tssr99112 10 99108029 to 99108085 56 - TSS region transcription start site region 99112
Tssr95539 10 99108138 to 99108206 68 + TSS region transcription start site region 95539
Galnt4 10 99108159 to 99113247 5088 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 4
Cpgi2153 10 99109549 to 99109756 207 CpG island CpG island 2153
Tssr99113 10 99117150 to 99117154 4 - TSS region transcription start site region 99113
Phxr2 10 99125167 to 99126325 1158 - protein coding gene per-hexamer repeat gene 2
Tssr99114 10 99132286 to 99132303 17 - TSS region transcription start site region 99114
Tssr99115 10 99132329 to 99132334 5 - TSS region transcription start site region 99115
Tssr99116 10 99132368 to 99132393 25 - TSS region transcription start site region 99116
Tssr99117 10 99132402 to 99132430 28 - TSS region transcription start site region 99117
Gm16239 10 99179184 to 99184610 5426 - antisense lncRNA gene predicted gene 16239
Tssr95540 10 99189486 to 99189495 9 + TSS region transcription start site region 95540
D10Mit244 10 99193124 to 99193246 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 244
Gm34574 10 99216442 to 99228906 12464 - lincRNA gene predicted gene, 34574
Tssr99118 10 99232602 to 99232620 18 - TSS region transcription start site region 99118
Gm48884 10 99232794 to 99237616 4822 - lincRNA gene predicted gene, 48884
Gm34777 10 99233074 to 99239013 5939 + lincRNA gene predicted gene, 34777
Tssr95541 10 99233095 to 99233109 14 + TSS region transcription start site region 95541
Tssr99119 10 99241925 to 99241934 9 - TSS region transcription start site region 99119
Tssr99120 10 99241939 to 99241970 31 - TSS region transcription start site region 99120