Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:9868404-12934644

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stxbp5 10 9755547 to 9901079 145532 - protein coding gene syntaxin binding protein 5 (tomosyn)
Tssr92340 10 9882208 to 9882210 2 + TSS region transcription start site region 92340
Tssr96677 10 9886707 to 9886725 18 - TSS region transcription start site region 96677
Tssr96678 10 9898323 to 9898328 5 - TSS region transcription start site region 96678
Cpgi1290 10 9900294 to 9901683 1389 CpG island CpG island 1290
Tssr96679 10 9901160 to 9901250 90 - TSS region transcription start site region 96679
Tssr92341 10 9901290 to 9901303 13 + TSS region transcription start site region 92341
Gm46210 10 9901313 to 9918843 17530 + lincRNA gene predicted gene, 46210
Tssr3135 10 9976643 to 9976665 22 + TSS region transcription start site region 3135
Tssr96680 10 9996303 to 9996307 4 - TSS region transcription start site region 96680
Gm48282 10 10040920 to 10041426 506 + pseudogene predicted gene, 48282
Gm48278 10 10083943 to 10092295 8352 + lincRNA gene predicted gene, 48278
Gm48281 10 10100420 to 10110099 9679 - lincRNA gene predicted gene, 48281
Gm25682 10 10100953 to 10101116 163 + snRNA gene predicted gene, 25682
Gm48279 10 10122486 to 10126891 4405 + lincRNA gene predicted gene, 48279
Gm48280 10 10131272 to 10131640 368 + pseudogene predicted gene, 48280
Gm28905 10 10168619 to 9975947 -192672 + lincRNA gene predicted gene 28905
Tssr92342 10 10184591 to 10184614 23 + TSS region transcription start site region 92342
Gm44555 10 10193524 to 10193671 147 + pseudogene predicted gene 44555
Tssr3136 10 10203121 to 10203125 4 + TSS region transcription start site region 3136
Gm31904 10 10230736 to 10234850 4114 - lincRNA gene predicted gene, 31904
D10Mit123 10 10232521 to 10232663 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 123
Sysbp1 10 10232521 to 87565233 77332712 QTL systolic blood pressure 1
Tssr96681 10 10234828 to 10234837 9 - TSS region transcription start site region 96681
Tssr96682 10 10234844 to 10234854 10 - TSS region transcription start site region 96682
Tssr96683 10 10234873 to 10234882 9 - TSS region transcription start site region 96683
Tssr96684 10 10234908 to 10234915 7 - TSS region transcription start site region 96684
Tssr92343 10 10234968 to 10234974 6 + TSS region transcription start site region 92343
4930598N05Rik 10 10234974 to 10258698 23724 + lncRNA gene RIKEN cDNA 4930598N05 gene
Tssr92344 10 10234987 to 10234994 7 + TSS region transcription start site region 92344
Tssr92345 10 10234998 to 10235023 25 + TSS region transcription start site region 92345
Gm48324 10 10270402 to 10296929 26527 - lincRNA gene predicted gene, 48324
Tssr96685 10 10296922 to 10296935 13 - TSS region transcription start site region 96685
Tssr96686 10 10296962 to 10296967 5 - TSS region transcription start site region 96686
D10Mit280 10 10310969 to 10311080 111 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 280
D10Mit280.1 10 10311108 to 10311254 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 280.1
Tssr3137 10 10334648 to 10334653 5 - TSS region transcription start site region 3137
Adgb 10 10335703 to 10472326 136623 - protein coding gene androglobin
Tssr96687 10 10339728 to 10339730 2 - TSS region transcription start site region 96687
Tssr92346 10 10343097 to 10343101 4 + TSS region transcription start site region 92346
Gm15568 10 10343115 to 10344327 1212 + pseudogene predicted gene 15568
Tssr96688 10 10344733 to 10344736 3 - TSS region transcription start site region 96688
D10Mit312 10 10390607 to 10390729 122 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-312
Gm48326 10 10465414 to 10465534 120 - pseudogene predicted gene, 48326
Tssr96689 10 10472393 to 10472405 12 - TSS region transcription start site region 96689
Tssr96690 10 10475033 to 10475053 20 - TSS region transcription start site region 96690
Tssr96691 10 10475067 to 10475083 16 - TSS region transcription start site region 96691
D10Mit245 10 10516079 to 10516177 98 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 245
Rab32 10 10545039 to 10558207 13168 - protein coding gene RAB32, member RAS oncogene family
Cpgi1291 10 10557671 to 10558345 674 CpG island CpG island 1291
Tssr96692 10 10558096 to 10558125 29 - TSS region transcription start site region 96692
Tssr96693 10 10558131 to 10558190 59 - TSS region transcription start site region 96693
Tssr96694 10 10558199 to 10558250 51 - TSS region transcription start site region 96694
Gm5177 10 10605945 to 10616313 10368 + pseudogene predicted pseudogene 5177
Gm23601 10 10663154 to 10663284 130 + snoRNA gene predicted gene, 23601
Gm10944 10 10681348 to 10681858 510 + protein coding gene predicted gene 10944
Grm1 10 10686059 to 11082356 396297 - protein coding gene glutamate receptor, metabotropic 1
Tssr96695 10 10688943 to 10688956 13 - TSS region transcription start site region 96695
Cpgi1292 10 10689018 to 10689682 664 CpG island CpG island 1292
Gm48400 10 10730629 to 10731126 497 + pseudogene predicted gene, 48400
Tssr92347 10 10748965 to 10748974 9 + TSS region transcription start site region 92347
4930567K20Rik 10 10751046 to 10758131 7085 + antisense lncRNA gene RIKEN cDNA 4930567K20 gene
Tssr92348 10 10751073 to 10751112 39 + TSS region transcription start site region 92348
Tssr92349 10 10751120 to 10751130 10 + TSS region transcription start site region 92349
Cpgi1293 10 10936334 to 10936574 240 CpG island CpG island 1293
Gm48406 10 11035916 to 11036144 228 + pseudogene predicted gene, 48406
Tssr96696 10 11045585 to 11045596 11 - TSS region transcription start site region 96696
Cpgi1294 10 11080228 to 11080854 626 CpG island CpG island 1294
Tssr96697 10 11080987 to 11081023 36 - TSS region transcription start site region 96697
Tssr96698 10 11081092 to 11081132 40 - TSS region transcription start site region 96698
Cpgi1295 10 11081577 to 11081954 377 CpG island CpG island 1295
Tssr96699 10 11082287 to 11082372 85 - TSS region transcription start site region 96699
Cpgi1296 10 11149164 to 11150084 920 CpG island CpG island 1296
Tssr92350 10 11149387 to 11149400 13 + TSS region transcription start site region 92350
Tssr92351 10 11149406 to 11149417 11 + TSS region transcription start site region 92351
Shprh 10 11149427 to 11217595 68168 + protein coding gene SNF2 histone linker PHD RING helicase
Tssr92352 10 11149449 to 11149513 64 + TSS region transcription start site region 92352
Gm16577 10 11212280 to 11212979 699 - antisense lncRNA gene predicted gene 16577
4930432B10Rik 10 11244790 to 11281221 36431 - bidirectional promoter lncRNA gene RIKEN cDNA 4930432B10 gene
Tssr96700 10 11280360 to 11280361 1 - TSS region transcription start site region 96700
Cpgi1297 10 11280533 to 11282123 1590 CpG island CpG island 1297
Tssr92353 10 11281025 to 11281041 16 + TSS region transcription start site region 92353
Tssr96701 10 11281191 to 11281248 57 - TSS region transcription start site region 96701
Tssr92354 10 11281304 to 11281357 53 + TSS region transcription start site region 92354
Fbxo30 10 11281330 to 11297969 16639 + protein coding gene F-box protein 30
Tssr92355 10 11281360 to 11281383 23 + TSS region transcription start site region 92355
Tssr92356 10 11281553 to 11281560 7 + TSS region transcription start site region 92356
Tssr92357 10 11281583 to 11281620 37 + TSS region transcription start site region 92357
Tssr92358 10 11283214 to 11283218 4 + TSS region transcription start site region 92358
Tssr92359 10 11285004 to 11285008 4 + TSS region transcription start site region 92359
Tssr92360 10 11286234 to 11286237 3 + TSS region transcription start site region 92360
Tssr92361 10 11323419 to 11323424 5 + TSS region transcription start site region 92361
Gm48666 10 11330137 to 11330415 278 - pseudogene predicted gene, 48666
Gm25979 10 11330489 to 11330626 137 - snoRNA gene predicted gene, 25979
Cpgi1298 10 11343105 to 11344046 941 CpG island CpG island 1298
Tssr92362 10 11343387 to 11343506 119 + TSS region transcription start site region 92362
Epm2a 10 11343445 to 11457477 114032 + protein coding gene epilepsy, progressive myoclonic epilepsy, type 2 gene alpha
Tssr92363 10 11356123 to 11356128 5 + TSS region transcription start site region 92363
Rpl17-ps11 10 11386881 to 11387604 723 - pseudogene ribosomal protein L17, pseudogene 11
Cpgi1299 10 11491974 to 11492189 215 CpG island CpG island 1299
Tssr96702 10 11492001 to 11492013 12 - TSS region transcription start site region 96702
Tssr96703 10 11492109 to 11492126 17 - TSS region transcription start site region 96703
Tssr92364 10 11492125 to 11492146 21 + TSS region transcription start site region 92364
Tssr96704 10 11492174 to 11492178 4 - TSS region transcription start site region 96704
Gm48679 10 11505296 to 11505933 637 + pseudogene predicted gene, 48679
Gm48680 10 11580086 to 11587244 7158 + lincRNA gene predicted gene, 48680
Gm9797 10 11609223 to 11609835 612 + pseudogene predicted pseudogene 9797
Tssr92365 10 11609256 to 11609269 13 + TSS region transcription start site region 92365
D10Mit80 10 11642896 to 11643049 153 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 80
Xiaf3 10 11642896 to 53772211 42129315 heritable phenotypic marker X inactivation autosomal factor 3
Gm22546 10 11648005 to 11648134 129 + snoRNA gene predicted gene, 22546
D10Mit79 10 11800265 to 11800463 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 79
Gm48697 10 11824413 to 11841931 17518 - lincRNA gene predicted gene, 48697
D10Mit154 10 11827495 to 11827625 130 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 154
Gm48698 10 11838623 to 11838895 272 - pseudogene predicted gene, 48698
Tssr96705 10 11869254 to 11869300 46 - TSS region transcription start site region 96705
Gm22194 10 11940973 to 11941067 94 + miRNA gene predicted gene, 22194
Gm25011 10 11959880 to 11960005 125 + snoRNA gene predicted gene, 25011
D10Mit153 10 11962879 to 11963028 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 153
Gm48721 10 12002790 to 12009771 6981 - lincRNA gene predicted gene, 48721
Gm48722 10 12020860 to 12031440 10580 - lincRNA gene predicted gene, 48722
Gm40601 10 12058648 to 12088407 29759 + lncRNA gene predicted gene, 40601
D10Mit152 10 12183301 to 12183450 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 152
D10Mit182 10 12197717 to 12197865 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 182
Gm48723 10 12323421 to 12324661 1240 - lincRNA gene predicted gene, 48723
Gm48724 10 12324822 to 12329224 4402 - lincRNA gene predicted gene, 48724
Gm23680 10 12363410 to 12363573 163 + snRNA gene predicted gene, 23680
Gm25139 10 12368623 to 12368832 209 + snoRNA gene predicted gene, 25139
Utrn 10 12382188 to 12869365 487177 - protein coding gene utrophin
Tssr96706 10 12383864 to 12383868 4 - TSS region transcription start site region 96706
Tssr96707 10 12406852 to 12406856 4 - TSS region transcription start site region 96707
Gm48798 10 12420804 to 12421596 792 - unclassified gene predicted gene, 48798
Tssr96708 10 12445282 to 12445285 3 - TSS region transcription start site region 96708
Tssr96709 10 12548494 to 12548521 27 - TSS region transcription start site region 96709
Tssr96710 10 12548730 to 12548775 45 - TSS region transcription start site region 96710
Tssr96711 10 12548886 to 12548914 28 - TSS region transcription start site region 96711
Tssr96712 10 12586297 to 12586327 30 - TSS region transcription start site region 96712
Tssr92366 10 12608918 to 12608925 7 + TSS region transcription start site region 92366
Tssr96713 10 12614560 to 12614572 12 - TSS region transcription start site region 96713
Tssr96714 10 12614597 to 12614617 20 - TSS region transcription start site region 96714
Tssr96715 10 12614687 to 12614700 13 - TSS region transcription start site region 96715
Tssr96716 10 12615033 to 12615069 36 - TSS region transcription start site region 96716
Tssr96717 10 12634077 to 12634123 46 - TSS region transcription start site region 96717
Gm23044 10 12793875 to 12793974 99 - snRNA gene predicted gene, 23044
Tssr96718 10 12813540 to 12813590 50 - TSS region transcription start site region 96718
Tssr96719 10 12813601 to 12813612 11 - TSS region transcription start site region 96719
D10Mit246 10 12821978 to 12822176 198 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 246
Tssr96720 10 12822170 to 12822178 8 - TSS region transcription start site region 96720
Tssr96721 10 12826930 to 12826976 46 - TSS region transcription start site region 96721
Tssr96722 10 12827290 to 12827307 17 - TSS region transcription start site region 96722
D10Mit1.1 10 12828191 to 12828302 111 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1.1
W3q11 10 12828307 to 84243920 71415613 QTL weight 3 weeks QTL 11
Lvrq4 10 12828307 to 84243920 71415613 QTL liver weight QTL 4
Egq7 10 12828307 to 84243920 71415613 QTL early growth QTL 7
D10Mit1 10 12828307 to 12828408 101 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1
W10q5 10 12828307 to 84243920 71415613 QTL weight 10 weeks QTL 5
Scfpq1 10 12828307 to 84243920 71415613 QTL subcutaneous fat pad percentage QTL 1
W6q6 10 12828307 to 84243920 71415613 QTL weight 6 weeks QTL 6
Hrtq3 10 12828307 to 84243920 71415613 QTL heart weight QTL 3
Kidpq2 10 12828307 to 84243920 71415613 QTL kidney weight percentage QTL 2
Tssr92367 10 12846012 to 12846014 2 + TSS region transcription start site region 92367
Gm7525 10 12846088 to 12846541 453 + pseudogene predicted gene 7525
Cpgi1300 10 12867514 to 12867729 215 CpG island CpG island 1300
Cpgi1301 10 12868098 to 12869743 1645 CpG island CpG island 1301
Tssr96723 10 12868174 to 12868187 13 - TSS region transcription start site region 96723
Tssr96724 10 12868190 to 12868227 37 - TSS region transcription start site region 96724
Tssr96725 10 12868290 to 12868304 14 - TSS region transcription start site region 96725
Tssr92368 10 12868401 to 12868432 31 + TSS region transcription start site region 92368
Tssr92369 10 12868967 to 12868981 14 + TSS region transcription start site region 92369
Tssr96726 10 12869084 to 12869137 53 - TSS region transcription start site region 96726
Tssr96727 10 12869144 to 12869222 78 - TSS region transcription start site region 96727
Tssr3138 10 12869442 to 12869487 45 - TSS region transcription start site region 3138
Tssr96728 10 12869489 to 12869517 28 - TSS region transcription start site region 96728
Tssr96729 10 12869630 to 12869641 11 - TSS region transcription start site region 96729
Tssr96730 10 12915478 to 12915493 15 - TSS region transcription start site region 96730
B230208H11Rik 10 12916648 to 12923090 6442 - lincRNA gene RIKEN cDNA B230208H11 gene
Cpgi1302 10 12922413 to 12923285 872 CpG island CpG island 1302
n-TLtaa3 10 12922571 to 12922653 82 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon TAA)
Tssr96731 10 12923039 to 12923073 34 - TSS region transcription start site region 96731
Tssr96732 10 12923075 to 12923080 5 - TSS region transcription start site region 96732
Tssr96733 10 12923103 to 12923143 40 - TSS region transcription start site region 96733
Tssr96734 10 12929868 to 12929873 5 - TSS region transcription start site region 96734