Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:9820947-10323619

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stxbp5 10 9755547 to 9901079 145532 - protein coding gene syntaxin binding protein 5 (tomosyn)
Tssr3134 10 9833635 to 9833637 2 + TSS region transcription start site region 3134
Gm25635 10 9852019 to 9852149 130 - snoRNA gene predicted gene, 25635
Tssr92340 10 9882208 to 9882210 2 + TSS region transcription start site region 92340
Tssr96677 10 9886707 to 9886725 18 - TSS region transcription start site region 96677
Tssr96678 10 9898323 to 9898328 5 - TSS region transcription start site region 96678
Cpgi1290 10 9900294 to 9901683 1389 CpG island CpG island 1290
Tssr96679 10 9901160 to 9901250 90 - TSS region transcription start site region 96679
Tssr92341 10 9901290 to 9901303 13 + TSS region transcription start site region 92341
Gm46210 10 9901313 to 9918843 17530 + lincRNA gene predicted gene, 46210
Tssr3135 10 9976643 to 9976665 22 + TSS region transcription start site region 3135
Tssr96680 10 9996303 to 9996307 4 - TSS region transcription start site region 96680
Gm48282 10 10040920 to 10041426 506 + pseudogene predicted gene, 48282
Gm48278 10 10083943 to 10092295 8352 + lincRNA gene predicted gene, 48278
Gm48281 10 10100420 to 10110099 9679 - lincRNA gene predicted gene, 48281
Gm25682 10 10100953 to 10101116 163 + snRNA gene predicted gene, 25682
Gm48279 10 10122486 to 10126891 4405 + lincRNA gene predicted gene, 48279
Gm48280 10 10131272 to 10131640 368 + pseudogene predicted gene, 48280
Gm28905 10 10168619 to 9975947 -192672 + lincRNA gene predicted gene 28905
Tssr92342 10 10184591 to 10184614 23 + TSS region transcription start site region 92342
Gm44555 10 10193524 to 10193671 147 + pseudogene predicted gene 44555
Tssr3136 10 10203121 to 10203125 4 + TSS region transcription start site region 3136
Gm31904 10 10230736 to 10234850 4114 - lincRNA gene predicted gene, 31904
Sysbp1 10 10232521 to 87565233 77332712 QTL systolic blood pressure 1
D10Mit123 10 10232521 to 10232663 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 123
Tssr96681 10 10234828 to 10234837 9 - TSS region transcription start site region 96681
Tssr96682 10 10234844 to 10234854 10 - TSS region transcription start site region 96682
Tssr96683 10 10234873 to 10234882 9 - TSS region transcription start site region 96683
Tssr96684 10 10234908 to 10234915 7 - TSS region transcription start site region 96684
Tssr92343 10 10234968 to 10234974 6 + TSS region transcription start site region 92343
4930598N05Rik 10 10234974 to 10258698 23724 + lncRNA gene RIKEN cDNA 4930598N05 gene
Tssr92344 10 10234987 to 10234994 7 + TSS region transcription start site region 92344
Tssr92345 10 10234998 to 10235023 25 + TSS region transcription start site region 92345
Gm48324 10 10270402 to 10296929 26527 - lincRNA gene predicted gene, 48324
Tssr96685 10 10296922 to 10296935 13 - TSS region transcription start site region 96685
Tssr96686 10 10296962 to 10296967 5 - TSS region transcription start site region 96686
D10Mit280 10 10310969 to 10311080 111 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 280
D10Mit280.1 10 10311108 to 10311254 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 280.1