Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:96643675-101403687

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324 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr99094 10 96664188 to 96664199 11 - TSS region transcription start site region 99094
Tssr99095 10 96664212 to 96664222 10 - TSS region transcription start site region 99095
Tssr95438 10 96690591 to 96690595 4 + TSS region transcription start site region 95438
Gm48507 10 96711807 to 96712086 279 + pseudogene predicted gene, 48507
Gm33897 10 96715763 to 96727924 12161 + lncRNA gene predicted gene, 33897
Tssr99096 10 96722644 to 96722659 15 - TSS region transcription start site region 99096
Tssr95439 10 96725125 to 96725133 8 + TSS region transcription start site region 95439
Tssr95440 10 96764991 to 96765021 30 + TSS region transcription start site region 95440
Gm6859 10 96768625 to 96769828 1203 - pseudogene predicted gene 6859
Gm48509 10 96798388 to 96798724 336 + pseudogene predicted gene, 48509
Gm48521 10 96801039 to 96884708 83669 + lincRNA gene predicted gene, 48521
Gm24587 10 96855582 to 96855670 88 - miRNA gene predicted gene, 24587
Gm46240 10 96901326 to 96920191 18865 + protein coding gene predicted gene, 46240
Gm33981 10 96945750 to 96958836 13086 - lincRNA gene predicted gene, 33981
Tssr99097 10 96958787 to 96958800 13 - TSS region transcription start site region 99097
4930556N09Rik 10 97035768 to 97061059 25291 + lincRNA gene RIKEN cDNA 4930556N09 gene
1700038C09Rik 10 97057742 to 97058249 507 unclassified gene RIKEN cDNA 1700038C09 gene
Gm48555 10 97105493 to 97106584 1091 - pseudogene predicted gene, 48555
D10Mit142.2 10 97167270 to 97167391 121 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 142.2
D10Mit142 10 97167392 to 97167510 118 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 142
Gm8613 10 97199195 to 97200370 1175 - pseudogene predicted gene 8613
Gm34044 10 97207387 to 97235757 28370 - lncRNA gene predicted gene, 34044
Gm18515 10 97241909 to 97242648 739 + pseudogene predicted gene, 18515
Gm34114 10 97388758 to 97428583 39825 - lncRNA gene predicted gene, 34114
Tssr95441 10 97393472 to 97393496 24 + TSS region transcription start site region 95441
Mir3966 10 97423478 to 97423562 84 + miRNA gene microRNA 3966
Tssr95442 10 97479419 to 97479432 13 + TSS region transcription start site region 95442
Tssr95443 10 97479436 to 97479463 27 + TSS region transcription start site region 95443
Tssr95444 10 97479470 to 97479481 11 + TSS region transcription start site region 95444
Tssr95445 10 97479603 to 97479617 14 + TSS region transcription start site region 95445
Dcn 10 97479609 to 97518143 38534 + protein coding gene decorin
Tssr95446 10 97479625 to 97479650 25 + TSS region transcription start site region 95446
Tssr95447 10 97479722 to 97479750 28 + TSS region transcription start site region 95447
Tssr95448 10 97480214 to 97480227 13 + TSS region transcription start site region 95448
Tssr95449 10 97482361 to 97482372 11 + TSS region transcription start site region 95449
Tssr95450 10 97482390 to 97482404 14 + TSS region transcription start site region 95450
Tssr95451 10 97482419 to 97482455 36 + TSS region transcription start site region 95451
Tssr95452 10 97483337 to 97483347 10 + TSS region transcription start site region 95452
Tssr95453 10 97483364 to 97483377 13 + TSS region transcription start site region 95453
Tssr95454 10 97483388 to 97483396 8 + TSS region transcription start site region 95454
Tssr95455 10 97483407 to 97483416 9 + TSS region transcription start site region 95455
Tssr95456 10 97483424 to 97483443 19 + TSS region transcription start site region 95456
Tssr95457 10 97483453 to 97483475 22 + TSS region transcription start site region 95457
Tssr95458 10 97483476 to 97483479 3 + TSS region transcription start site region 95458
Tssr95459 10 97483481 to 97483515 34 + TSS region transcription start site region 95459
Tssr95460 10 97495011 to 97495041 30 + TSS region transcription start site region 95460
Tssr95461 10 97503807 to 97503810 3 + TSS region transcription start site region 95461
Tssr95462 10 97506481 to 97506512 31 + TSS region transcription start site region 95462
Tssr95463 10 97506534 to 97506547 13 + TSS region transcription start site region 95463
Tssr95464 10 97506553 to 97506584 31 + TSS region transcription start site region 95464
Tssr3333 10 97506601 to 97506608 7 + TSS region transcription start site region 3333
Tssr95465 10 97506660 to 97506670 10 + TSS region transcription start site region 95465
Tssr95466 10 97507705 to 97507717 12 + TSS region transcription start site region 95466
Tssr95467 10 97507753 to 97507769 16 + TSS region transcription start site region 95467
Tssr3334 10 97509951 to 97510026 75 + TSS region transcription start site region 3334
Tssr95468 10 97513593 to 97513619 26 + TSS region transcription start site region 95468
Tssr95469 10 97517451 to 97517469 18 + TSS region transcription start site region 95469
Tssr95470 10 97517494 to 97517506 12 + TSS region transcription start site region 95470
Tssr95471 10 97517516 to 97517528 12 + TSS region transcription start site region 95471
Tssr95472 10 97517547 to 97517570 23 + TSS region transcription start site region 95472
Tssr95473 10 97517581 to 97517594 13 + TSS region transcription start site region 95473
Tssr95474 10 97517609 to 97517629 20 + TSS region transcription start site region 95474
Tssr95475 10 97517640 to 97517651 11 + TSS region transcription start site region 95475
Tssr95476 10 97517660 to 97517673 13 + TSS region transcription start site region 95476
Tssr95477 10 97517680 to 97517691 11 + TSS region transcription start site region 95477
Tssr95478 10 97518007 to 97518041 34 + TSS region transcription start site region 95478
Tssr95479 10 97565415 to 97565431 16 + TSS region transcription start site region 95479
Tssr95480 10 97565436 to 97565546 110 + TSS region transcription start site region 95480
Lum 10 97565501 to 97572703 7202 + protein coding gene lumican
Tssr95481 10 97565552 to 97565564 12 + TSS region transcription start site region 95481
Tssr95482 10 97565578 to 97565597 19 + TSS region transcription start site region 95482
Tssr95483 10 97565636 to 97565671 35 + TSS region transcription start site region 95483
Tssr95484 10 97565682 to 97565695 13 + TSS region transcription start site region 95484
Tssr95485 10 97565756 to 97565774 18 + TSS region transcription start site region 95485
Tssr95486 10 97565778 to 97565820 42 + TSS region transcription start site region 95486
Tssr95487 10 97568061 to 97568091 30 + TSS region transcription start site region 95487
Tssr95488 10 97568353 to 97568381 28 + TSS region transcription start site region 95488
4930473O22Rik 10 97590984 to 97596931 5947 - lincRNA gene RIKEN cDNA 4930473O22 gene
Tssr99098 10 97596932 to 97596942 10 - TSS region transcription start site region 99098
Tssr95489 10 97606865 to 97606900 35 + TSS region transcription start site region 95489
Kera 10 97606955 to 97613688 6733 + protein coding gene keratocan
Tssr95490 10 97607103 to 97607115 12 + TSS region transcription start site region 95490
Tssr95491 10 97607166 to 97607244 78 + TSS region transcription start site region 95491
Tssr95492 10 97607250 to 97607261 11 + TSS region transcription start site region 95492
Tssr95493 10 97607291 to 97607338 47 + TSS region transcription start site region 95493
Tssr95494 10 97613255 to 97613257 2 + TSS region transcription start site region 95494
Gm40749 10 97620168 to 97623256 3088 - lncRNA gene predicted gene, 40749
D10Ertd126e 10 97626554 to 97626801 247 DNA segment DNA segment, Chr 10, ERATO Doi 126, expressed
Tssr99099 10 97644047 to 97644057 10 - TSS region transcription start site region 99099
Tssr99100 10 97644063 to 97644070 7 - TSS region transcription start site region 99100
Epyc 10 97644068 to 97681900 37832 + protein coding gene epiphycan
Tssr95495 10 97646985 to 97646998 13 + TSS region transcription start site region 95495
Tssr95496 10 97647084 to 97647113 29 + TSS region transcription start site region 95496
Tssr95497 10 97647119 to 97647130 11 + TSS region transcription start site region 95497
Tssr95498 10 97647145 to 97647156 11 + TSS region transcription start site region 95498
Tssr95499 10 97647406 to 97647436 30 + TSS region transcription start site region 95499
Tssr95500 10 97649818 to 97649825 7 + TSS region transcription start site region 95500
Tssr95501 10 97674741 to 97674750 9 + TSS region transcription start site region 95501
Gm10754 10 97681414 to 97967090 285676 - lincRNA gene predicted gene 10754
Tssr95502 10 97693020 to 97693029 9 + TSS region transcription start site region 95502
Cpgi2150 10 97693032 to 97694223 1191 CpG island CpG island 2150
Tssr95503 10 97693053 to 97693061 8 + TSS region transcription start site region 95503
Ccer1 10 97693059 to 97694923 1864 + protein coding gene coiled-coil glutamate-rich protein 1
Tssr95504 10 97714734 to 97714751 17 + TSS region transcription start site region 95504
Tssr95505 10 97714767 to 97714789 22 + TSS region transcription start site region 95505
4930525C09Rik 10 97714772 to 97753702 38930 + lincRNA gene RIKEN cDNA 4930525C09 gene
C030005K15Rik 10 97724874 to 97726755 1881 - unclassified gene RIKEN cDNA C030005K15 gene
D10Mit97 10 97738104 to 97738246 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 97
Gm25658 10 97744757 to 97744884 127 - snoRNA gene predicted gene, 25658
D10Mit120 10 97932688 to 97932818 130 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 120
D10Mit289 10 98039443 to 98039542 99 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 289
Gm8633 10 98299927 to 98351867 51940 - lincRNA gene predicted gene 8633
Gm48687 10 98301019 to 98301253 234 + pseudogene predicted gene, 48687
Gm37631 10 98486510 to 98486873 363 - unclassified gene predicted gene, 37631
Gm34297 10 98537488 to 98567511 30023 + lincRNA gene predicted gene, 34297
Gm5427 10 98653799 to 98699710 45911 - lincRNA gene predicted gene 5427
Tssr95506 10 98668001 to 98668004 3 + TSS region transcription start site region 95506
Tssr99101 10 98690062 to 98690094 32 - TSS region transcription start site region 99101
Tssr99102 10 98744286 to 98744291 5 - TSS region transcription start site region 99102
Tssr99103 10 98744305 to 98744314 9 - TSS region transcription start site region 99103
Tssr95507 10 98781249 to 98781254 5 + TSS region transcription start site region 95507
D10Mit202 10 98785631 to 98785892 261 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 202
Tssr95508 10 98798911 to 98798922 11 + TSS region transcription start site region 95508
Gm40750 10 98807136 to 98809465 2329 + lncRNA gene predicted gene, 40750
Gm34346 10 98834007 to 98882737 48730 - lncRNA gene predicted gene, 34346
Tssr99104 10 98857092 to 98857096 4 - TSS region transcription start site region 99104
Tssr95509 10 98878065 to 98878073 8 + TSS region transcription start site region 95509
Tssr99105 10 98880113 to 98880142 29 - TSS region transcription start site region 99105
Tssr95510 10 98880354 to 98880379 25 + TSS region transcription start site region 95510
Tssr95511 10 98880390 to 98880402 12 + TSS region transcription start site region 95511
Tssr99106 10 98880806 to 98880818 12 - TSS region transcription start site region 99106
Tssr99107 10 98898005 to 98898028 23 - TSS region transcription start site region 99107
D10Mit290 10 98898947 to 98899069 122 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 290
Cpgi2151 10 98913432 to 98915964 2532 CpG island CpG island 2151
Tssr99108 10 98913766 to 98913770 4 - TSS region transcription start site region 99108
Tssr99109 10 98913948 to 98913953 5 - TSS region transcription start site region 99109
Tssr99110 10 98914155 to 98914168 13 - TSS region transcription start site region 99110
Atp2b1 10 98914406 to 99026143 111737 + protein coding gene ATPase, Ca++ transporting, plasma membrane 1
Tssr95512 10 98914413 to 98914418 5 + TSS region transcription start site region 95512
Tssr95513 10 98914426 to 98914437 11 + TSS region transcription start site region 95513
Tssr95514 10 98914561 to 98914576 15 + TSS region transcription start site region 95514
Tssr95515 10 98914639 to 98914721 82 + TSS region transcription start site region 95515
Tssr99111 10 98914989 to 98915009 20 - TSS region transcription start site region 99111
Tssr95516 10 98915117 to 98915172 55 + TSS region transcription start site region 95516
Tssr95517 10 98915181 to 98915192 11 + TSS region transcription start site region 95517
Tssr95518 10 98916109 to 98916127 18 + TSS region transcription start site region 95518
Tssr95519 10 98917553 to 98917559 6 + TSS region transcription start site region 95519
Tssr95520 10 98920577 to 98920583 6 + TSS region transcription start site region 95520
Tssr95521 10 98921020 to 98921029 9 + TSS region transcription start site region 95521
Tssr95522 10 98931136 to 98931145 9 + TSS region transcription start site region 95522
Tssr95523 10 98945679 to 98945684 5 + TSS region transcription start site region 95523
Tssr95524 10 98986935 to 98986962 27 + TSS region transcription start site region 95524
Tssr95525 10 98987073 to 98987112 39 + TSS region transcription start site region 95525
Tssr95526 10 98990497 to 98990512 15 + TSS region transcription start site region 95526
Tssr95527 10 98994896 to 98994901 5 + TSS region transcription start site region 95527
Tssr95528 10 99000787 to 99000823 36 + TSS region transcription start site region 95528
Tssr95529 10 99009480 to 99009492 12 + TSS region transcription start site region 95529
Tssr95530 10 99013280 to 99013288 8 + TSS region transcription start site region 95530
Tssr95531 10 99013910 to 99013959 49 + TSS region transcription start site region 95531
Tssr95532 10 99023408 to 99023428 20 + TSS region transcription start site region 95532
Tssr95533 10 99023437 to 99023457 20 + TSS region transcription start site region 95533
Tssr95534 10 99023675 to 99023687 12 + TSS region transcription start site region 95534
Tssr95535 10 99025411 to 99025421 10 + TSS region transcription start site region 95535
Gm48761 10 99039472 to 99041443 1971 + unclassified gene predicted gene, 48761
Gm48768 10 99105791 to 99108080 2289 - bidirectional promoter lncRNA gene predicted gene, 48768
Cpgi2152 10 99106703 to 99108467 1764 CpG island CpG island 2152
Poc1b 10 99107036 to 99198074 91038 + protein coding gene POC1 centriolar protein B
Tssr95536 10 99107070 to 99107132 62 + TSS region transcription start site region 95536
Tssr95537 10 99107148 to 99107189 41 + TSS region transcription start site region 95537
Tssr95538 10 99107511 to 99107531 20 + TSS region transcription start site region 95538
Tssr99112 10 99108029 to 99108085 56 - TSS region transcription start site region 99112
Tssr95539 10 99108138 to 99108206 68 + TSS region transcription start site region 95539
Galnt4 10 99108159 to 99113247 5088 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 4
Cpgi2153 10 99109549 to 99109756 207 CpG island CpG island 2153
Tssr99113 10 99117150 to 99117154 4 - TSS region transcription start site region 99113
Phxr2 10 99125167 to 99126325 1158 - protein coding gene per-hexamer repeat gene 2
Tssr99114 10 99132286 to 99132303 17 - TSS region transcription start site region 99114
Tssr99115 10 99132329 to 99132334 5 - TSS region transcription start site region 99115
Tssr99116 10 99132368 to 99132393 25 - TSS region transcription start site region 99116
Tssr99117 10 99132402 to 99132430 28 - TSS region transcription start site region 99117
Gm16239 10 99179184 to 99184610 5426 - antisense lncRNA gene predicted gene 16239
Tssr95540 10 99189486 to 99189495 9 + TSS region transcription start site region 95540
D10Mit244 10 99193124 to 99193246 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 244
Gm34574 10 99216442 to 99228906 12464 - lincRNA gene predicted gene, 34574
Tssr99118 10 99232602 to 99232620 18 - TSS region transcription start site region 99118
Gm48884 10 99232794 to 99237616 4822 - lincRNA gene predicted gene, 48884
Gm34777 10 99233074 to 99239013 5939 + lincRNA gene predicted gene, 34777
Tssr95541 10 99233095 to 99233109 14 + TSS region transcription start site region 95541
Tssr99119 10 99241925 to 99241934 9 - TSS region transcription start site region 99119
Tssr99120 10 99241939 to 99241970 31 - TSS region transcription start site region 99120
Cpgi2154 10 99261246 to 99262380 1134 CpG island CpG island 2154
Tssr95542 10 99261551 to 99261617 66 + TSS region transcription start site region 95542
Tssr99121 10 99261709 to 99261726 17 - TSS region transcription start site region 99121
Tssr95543 10 99261869 to 99261891 22 + TSS region transcription start site region 95543
Cpgi2155 10 99262857 to 99264697 1840 CpG island CpG island 2155
Tssr99122 10 99263046 to 99263085 39 - TSS region transcription start site region 99122
Tssr95544 10 99263224 to 99263240 16 + TSS region transcription start site region 95544
Dusp6 10 99263231 to 99267489 4258 + protein coding gene dual specificity phosphatase 6
Tssr95545 10 99263294 to 99263314 20 + TSS region transcription start site region 95545
Tssr95546 10 99266124 to 99266150 26 + TSS region transcription start site region 95546