Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:9611707-10161725

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Samd5 10 9622936 to 9675208 52272 - protein coding gene sterile alpha motif domain containing 5
5830408B19Rik 10 9622943 to 9624848 1905 unclassified gene RIKEN cDNA 5830408B19 gene
Tssr96670 10 9649717 to 9649733 16 - TSS region transcription start site region 96670
Gm48760 10 9667676 to 9668176 500 + pseudogene predicted gene, 48760
Cpgi1287 10 9674367 to 9676148 1781 CpG island CpG island 1287
Tssr96671 10 9675163 to 9675243 80 - TSS region transcription start site region 96671
Tssr96672 10 9675399 to 9675416 17 - TSS region transcription start site region 96672
Tssr96673 10 9675799 to 9675819 20 - TSS region transcription start site region 96673
Tssr96674 10 9675825 to 9675847 22 - TSS region transcription start site region 96674
Cpgi1288 10 9683786 to 9684001 215 CpG island CpG island 1288
Gm6150 10 9684722 to 9691909 7187 + lncRNA gene predicted gene 6150
Gm31471 10 9694841 to 9699214 4373 - lncRNA gene predicted gene, 31471
Tssr92339 10 9732555 to 9732558 3 + TSS region transcription start site region 92339
Gm19161 10 9748447 to 9749180 733 - pseudogene predicted gene, 19161
Stxbp5 10 9755547 to 9901079 145532 - protein coding gene syntaxin binding protein 5 (tomosyn)
Tssr96675 10 9782828 to 9782831 3 - TSS region transcription start site region 96675
Cpgi1289 10 9797964 to 9798194 230 CpG island CpG island 1289
Tssr96676 10 9811992 to 9812034 42 - TSS region transcription start site region 96676
Tssr3134 10 9833635 to 9833637 2 + TSS region transcription start site region 3134
Gm25635 10 9852019 to 9852149 130 - snoRNA gene predicted gene, 25635
Tssr92340 10 9882208 to 9882210 2 + TSS region transcription start site region 92340
Tssr96677 10 9886707 to 9886725 18 - TSS region transcription start site region 96677
Tssr96678 10 9898323 to 9898328 5 - TSS region transcription start site region 96678
Cpgi1290 10 9900294 to 9901683 1389 CpG island CpG island 1290
Tssr96679 10 9901160 to 9901250 90 - TSS region transcription start site region 96679
Tssr92341 10 9901290 to 9901303 13 + TSS region transcription start site region 92341
Gm46210 10 9901313 to 9918843 17530 + lincRNA gene predicted gene, 46210
Tssr3135 10 9976643 to 9976665 22 + TSS region transcription start site region 3135
Tssr96680 10 9996303 to 9996307 4 - TSS region transcription start site region 96680
Gm48282 10 10040920 to 10041426 506 + pseudogene predicted gene, 48282
Gm48278 10 10083943 to 10092295 8352 + lincRNA gene predicted gene, 48278
Gm48281 10 10100420 to 10110099 9679 - lincRNA gene predicted gene, 48281
Gm25682 10 10100953 to 10101116 163 + snRNA gene predicted gene, 25682
Gm48279 10 10122486 to 10126891 4405 + lincRNA gene predicted gene, 48279
Gm48280 10 10131272 to 10131640 368 + pseudogene predicted gene, 48280
Gm28905 10 10168619 to 9975947 -192672 + lincRNA gene predicted gene 28905