Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:95411612-95592136

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Socs2 10 95385362 to 95417180 31818 - protein coding gene suppressor of cytokine signaling 2
Tssr95356 10 95411762 to 95411776 14 + TSS region transcription start site region 95356
Tssr95357 10 95412026 to 95412048 22 + TSS region transcription start site region 95357
Gm33230 10 95413117 to 95414603 1486 + lncRNA gene predicted gene, 33230
Tssr99030 10 95413593 to 95413601 8 - TSS region transcription start site region 99030
Cpgi2139 10 95414306 to 95417694 3388 CpG island CpG island 2139
Tssr99031 10 95415194 to 95415220 26 - TSS region transcription start site region 99031
Tssr99032 10 95415285 to 95415297 12 - TSS region transcription start site region 99032
Tssr99033 10 95415465 to 95415483 18 - TSS region transcription start site region 99033
Tssr99034 10 95415497 to 95415511 14 - TSS region transcription start site region 99034
Tssr95358 10 95415591 to 95415627 36 + TSS region transcription start site region 95358
Tssr99035 10 95415973 to 95416006 33 - TSS region transcription start site region 99035
Tssr99036 10 95416007 to 95416035 28 - TSS region transcription start site region 99036
Tssr99037 10 95416716 to 95416732 16 - TSS region transcription start site region 99037
Tssr99038 10 95416780 to 95416834 54 - TSS region transcription start site region 99038
Tssr99039 10 95416850 to 95416861 11 - TSS region transcription start site region 99039
Tssr95359 10 95416983 to 95416993 10 + TSS region transcription start site region 95359
Tssr99040 10 95417040 to 95417077 37 - TSS region transcription start site region 99040
Tssr99041 10 95417099 to 95417110 11 - TSS region transcription start site region 99041
Tssr95360 10 95417235 to 95417267 32 + TSS region transcription start site region 95360
Tssr99042 10 95417250 to 95417269 19 - TSS region transcription start site region 99042
Tssr95361 10 95417352 to 95417385 33 + TSS region transcription start site region 95361
5730420D15Rik 10 95417375 to 95428640 11265 + bidirectional promoter lncRNA gene RIKEN cDNA 5730420D15 gene
Tssr95362 10 95418682 to 95418687 5 + TSS region transcription start site region 95362
Gm47599 10 95445316 to 95461224 15908 - lincRNA gene predicted gene, 47599
Tssr99043 10 95447961 to 95447970 9 - TSS region transcription start site region 99043
Tssr99044 10 95447973 to 95448006 33 - TSS region transcription start site region 99044
Gm47600 10 95454672 to 95454966 294 - pseudogene predicted gene, 47600
Tssr95363 10 95456490 to 95456505 15 + TSS region transcription start site region 95363
Cpgi2140 10 95466825 to 95467066 241 CpG island CpG island 2140
Gm3619 10 95477343 to 95478117 774 - pseudogene predicted gene 3619
Mrpl42 10 95480805 to 95501940 21135 - protein coding gene mitochondrial ribosomal protein L42
Tssr99045 10 95494791 to 95494795 4 - TSS region transcription start site region 99045
Cpgi2141 10 95501612 to 95502136 524 CpG island CpG island 2141
Tssr99046 10 95501921 to 95501953 32 - TSS region transcription start site region 99046
Tssr99047 10 95501957 to 95501966 9 - TSS region transcription start site region 99047
Gm46239 10 95512227 to 95514786 2559 - lncRNA gene predicted gene, 46239
Cpgi2142 10 95514347 to 95516021 1674 CpG island CpG island 2142
Tssr99048 10 95514742 to 95514769 27 - TSS region transcription start site region 99048
Tssr99049 10 95514770 to 95514789 19 - TSS region transcription start site region 99049
Tssr95364 10 95514870 to 95514888 18 + TSS region transcription start site region 95364
Tssr95365 10 95514962 to 95514970 8 + TSS region transcription start site region 95365
Tssr95366 10 95515116 to 95515161 45 + TSS region transcription start site region 95366
Ube2n 10 95515162 to 95545658 30496 + protein coding gene ubiquitin-conjugating enzyme E2N
Tssr95367 10 95515170 to 95515180 10 + TSS region transcription start site region 95367
Tssr95368 10 95523184 to 95523191 7 + TSS region transcription start site region 95368
Tssr95369 10 95527166 to 95527169 3 + TSS region transcription start site region 95369
Siim1 10 95545406 to 95545406 0 QTL stress induced immobility 1
Nudt4 10 95547007 to 95564146 17139 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 4
Tssr99050 10 95548524 to 95548538 14 - TSS region transcription start site region 99050
Tssr99051 10 95548923 to 95548934 11 - TSS region transcription start site region 99051
Mir3058 10 95559231 to 95559321 90 - miRNA gene microRNA 3058
Cpgi2143 10 95563224 to 95564627 1403 CpG island CpG island 2143
Tssr95370 10 95563866 to 95563871 5 + TSS region transcription start site region 95370
Tssr99052 10 95564021 to 95564028 7 - TSS region transcription start site region 99052
Tssr99053 10 95564034 to 95564062 28 - TSS region transcription start site region 99053
Tssr99054 10 95564065 to 95564091 26 - TSS region transcription start site region 99054
Tssr99055 10 95564099 to 95564121 22 - TSS region transcription start site region 99055
Tssr99056 10 95564135 to 95564154 19 - TSS region transcription start site region 99056
Tssr99057 10 95564173 to 95564181 8 - TSS region transcription start site region 99057