Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:94936228-95592012

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plxnc1 10 94790866 to 94944835 153969 - protein coding gene plexin C1
Cpgi2130 10 94943386 to 94945564 2178 CpG island CpG island 2130
Tssr99001 10 94943788 to 94943859 71 - TSS region transcription start site region 99001
Tssr99002 10 94943873 to 94943887 14 - TSS region transcription start site region 99002
Tssr99003 10 94944170 to 94944235 65 - TSS region transcription start site region 99003
Tssr99004 10 94944535 to 94944546 11 - TSS region transcription start site region 99004
Tssr99005 10 94944790 to 94944831 41 - TSS region transcription start site region 99005
Tssr99006 10 94944835 to 94944862 27 - TSS region transcription start site region 99006
Tssr99007 10 94944865 to 94944891 26 - TSS region transcription start site region 99007
Tssr99008 10 94944923 to 94944939 16 - TSS region transcription start site region 99008
Tssr99009 10 94944962 to 94944992 30 - TSS region transcription start site region 99009
Gm25266 10 94948590 to 94948893 303 + unclassified non-coding RNA gene predicted gene, 25266
Cpgi2131 10 94950676 to 94950928 252 CpG island CpG island 2131
Tssr99010 10 94950785 to 94950786 1 - TSS region transcription start site region 99010
Tssr99011 10 94961476 to 94961481 5 - TSS region transcription start site region 99011
Gm40744 10 94961637 to 94965244 3607 + lncRNA gene predicted gene, 40744
Tssr95349 10 94961675 to 94961686 11 + TSS region transcription start site region 95349
Cpgi2132 10 94991624 to 94991861 237 CpG island CpG island 2132
Gm48867 10 94993952 to 94999442 5490 - lincRNA gene predicted gene, 48867
D10Mit69 10 95101525 to 95101674 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 69
Cpgi2133 10 95110988 to 95111438 450 CpG island CpG island 2133
Gm48868 10 95116379 to 95117731 1352 + unclassified gene predicted gene, 48868
Tssr95350 10 95117891 to 95117896 5 + TSS region transcription start site region 95350
Gm29684 10 95120582 to 95145825 25243 - lincRNA gene predicted gene, 29684
Gm33091 10 95134290 to 95136874 2584 - lincRNA gene predicted gene, 33091
Tssr99012 10 95145398 to 95145414 16 - TSS region transcription start site region 99012
Tssr99013 10 95145535 to 95145547 12 - TSS region transcription start site region 99013
Tssr99014 10 95145801 to 95145815 14 - TSS region transcription start site region 99014
Tssr99015 10 95145828 to 95145847 19 - TSS region transcription start site region 99015
Gm48874 10 95160361 to 95165660 5299 + unclassified gene predicted gene, 48874
Cradd 10 95174746 to 95324133 149387 - protein coding gene CASP2 and RIPK1 domain containing adaptor with death domain
Tssr99016 10 95175993 to 95176025 32 - TSS region transcription start site region 99016
Tssr3328 10 95180323 to 95180347 24 + TSS region transcription start site region 3328
Tssr95351 10 95218017 to 95218028 11 + TSS region transcription start site region 95351
Tssr99017 10 95232706 to 95232709 3 - TSS region transcription start site region 99017
Cpgi2134 10 95251814 to 95252168 354 CpG island CpG island 2134
A630089K24Rik 10 95261228 to 95267012 5784 unclassified gene RIKEN cDNA A630089K24 gene
Cpgi2135 10 95264653 to 95265031 378 CpG island CpG island 2135
Tssr99018 10 95264951 to 95264961 10 - TSS region transcription start site region 99018
Tssr99019 10 95264966 to 95264987 21 - TSS region transcription start site region 99019
Tssr95352 10 95265194 to 95265209 15 + TSS region transcription start site region 95352
Tssr99020 10 95267147 to 95267167 20 - TSS region transcription start site region 99020
Tssr99021 10 95298637 to 95298642 5 - TSS region transcription start site region 99021
Gm48880 10 95312870 to 95314853 1983 - unclassified gene predicted gene, 48880
Gm48882 10 95318247 to 95324358 6111 + antisense lncRNA gene predicted gene, 48882
Tssr95353 10 95318457 to 95318467 10 + TSS region transcription start site region 95353
Tssr95354 10 95319270 to 95319283 13 + TSS region transcription start site region 95354
Tssr95355 10 95319291 to 95319301 10 + TSS region transcription start site region 95355
Tssr99022 10 95319996 to 95320014 18 - TSS region transcription start site region 99022
Tssr99023 10 95322979 to 95322985 6 - TSS region transcription start site region 99023
Cpgi2136 10 95323411 to 95324075 664 CpG island CpG island 2136
Tssr99024 10 95323532 to 95323545 13 - TSS region transcription start site region 99024
Tssr99025 10 95323550 to 95323610 60 - TSS region transcription start site region 99025
Tssr99026 10 95323993 to 95324008 15 - TSS region transcription start site region 99026
Tssr99027 10 95324072 to 95324114 42 - TSS region transcription start site region 99027
Tssr99028 10 95324126 to 95324144 18 - TSS region transcription start site region 99028
Tssr99029 10 95324146 to 95324157 11 - TSS region transcription start site region 99029
2310039L15Rik 10 95336276 to 95363216 26940 + lincRNA gene RIKEN cDNA 2310039L15 gene
Cpgi2137 10 95352684 to 95352910 226 CpG island CpG island 2137
Socs2 10 95385362 to 95417180 31818 - protein coding gene suppressor of cytokine signaling 2
Cpgi2138 10 95398492 to 95398873 381 CpG island CpG island 2138
Tssr3329 10 95409029 to 95409032 3 + TSS region transcription start site region 3329
Tssr95356 10 95411762 to 95411776 14 + TSS region transcription start site region 95356
Tssr95357 10 95412026 to 95412048 22 + TSS region transcription start site region 95357
Gm33230 10 95413117 to 95414603 1486 + lncRNA gene predicted gene, 33230
Tssr99030 10 95413593 to 95413601 8 - TSS region transcription start site region 99030
Cpgi2139 10 95414306 to 95417694 3388 CpG island CpG island 2139
Tssr99031 10 95415194 to 95415220 26 - TSS region transcription start site region 99031
Tssr99032 10 95415285 to 95415297 12 - TSS region transcription start site region 99032
Tssr99033 10 95415465 to 95415483 18 - TSS region transcription start site region 99033
Tssr99034 10 95415497 to 95415511 14 - TSS region transcription start site region 99034
Tssr95358 10 95415591 to 95415627 36 + TSS region transcription start site region 95358
Tssr99035 10 95415973 to 95416006 33 - TSS region transcription start site region 99035
Tssr99036 10 95416007 to 95416035 28 - TSS region transcription start site region 99036
Tssr99037 10 95416716 to 95416732 16 - TSS region transcription start site region 99037
Tssr99038 10 95416780 to 95416834 54 - TSS region transcription start site region 99038
Tssr99039 10 95416850 to 95416861 11 - TSS region transcription start site region 99039
Tssr95359 10 95416983 to 95416993 10 + TSS region transcription start site region 95359
Tssr99040 10 95417040 to 95417077 37 - TSS region transcription start site region 99040
Tssr99041 10 95417099 to 95417110 11 - TSS region transcription start site region 99041
Tssr95360 10 95417235 to 95417267 32 + TSS region transcription start site region 95360
Tssr99042 10 95417250 to 95417269 19 - TSS region transcription start site region 99042
Tssr95361 10 95417352 to 95417385 33 + TSS region transcription start site region 95361
5730420D15Rik 10 95417375 to 95428640 11265 + bidirectional promoter lncRNA gene RIKEN cDNA 5730420D15 gene
Tssr95362 10 95418682 to 95418687 5 + TSS region transcription start site region 95362
Gm47599 10 95445316 to 95461224 15908 - lincRNA gene predicted gene, 47599
Tssr99043 10 95447961 to 95447970 9 - TSS region transcription start site region 99043
Tssr99044 10 95447973 to 95448006 33 - TSS region transcription start site region 99044
Gm47600 10 95454672 to 95454966 294 - pseudogene predicted gene, 47600
Tssr95363 10 95456490 to 95456505 15 + TSS region transcription start site region 95363
Cpgi2140 10 95466825 to 95467066 241 CpG island CpG island 2140
Gm3619 10 95477343 to 95478117 774 - pseudogene predicted gene 3619
Mrpl42 10 95480805 to 95501940 21135 - protein coding gene mitochondrial ribosomal protein L42
Tssr99045 10 95494791 to 95494795 4 - TSS region transcription start site region 99045
Cpgi2141 10 95501612 to 95502136 524 CpG island CpG island 2141
Tssr99046 10 95501921 to 95501953 32 - TSS region transcription start site region 99046
Tssr99047 10 95501957 to 95501966 9 - TSS region transcription start site region 99047
Gm46239 10 95512227 to 95514786 2559 - lncRNA gene predicted gene, 46239
Cpgi2142 10 95514347 to 95516021 1674 CpG island CpG island 2142
Tssr99048 10 95514742 to 95514769 27 - TSS region transcription start site region 99048
Tssr99049 10 95514770 to 95514789 19 - TSS region transcription start site region 99049
Tssr95364 10 95514870 to 95514888 18 + TSS region transcription start site region 95364
Tssr95365 10 95514962 to 95514970 8 + TSS region transcription start site region 95365
Tssr95366 10 95515116 to 95515161 45 + TSS region transcription start site region 95366
Ube2n 10 95515162 to 95545658 30496 + protein coding gene ubiquitin-conjugating enzyme E2N
Tssr95367 10 95515170 to 95515180 10 + TSS region transcription start site region 95367
Tssr95368 10 95523184 to 95523191 7 + TSS region transcription start site region 95368
Tssr95369 10 95527166 to 95527169 3 + TSS region transcription start site region 95369
Siim1 10 95545406 to 95545406 0 QTL stress induced immobility 1
Nudt4 10 95547007 to 95564146 17139 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 4
Tssr99050 10 95548524 to 95548538 14 - TSS region transcription start site region 99050
Tssr99051 10 95548923 to 95548934 11 - TSS region transcription start site region 99051
Mir3058 10 95559231 to 95559321 90 - miRNA gene microRNA 3058
Cpgi2143 10 95563224 to 95564627 1403 CpG island CpG island 2143
Tssr95370 10 95563866 to 95563871 5 + TSS region transcription start site region 95370
Tssr99052 10 95564021 to 95564028 7 - TSS region transcription start site region 99052
Tssr99053 10 95564034 to 95564062 28 - TSS region transcription start site region 99053
Tssr99054 10 95564065 to 95564091 26 - TSS region transcription start site region 99054
Tssr99055 10 95564099 to 95564121 22 - TSS region transcription start site region 99055
Tssr99056 10 95564135 to 95564154 19 - TSS region transcription start site region 99056
Tssr99057 10 95564173 to 95564181 8 - TSS region transcription start site region 99057