Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:93733739-95643808

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269 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntn4 10 93641049 to 93745972 104923 + protein coding gene netrin 4
Tssr95284 10 93778603 to 93778629 26 + TSS region transcription start site region 95284
Gm3571 10 93778660 to 93779719 1059 + pseudogene predicted gene 3571
Gm26239 10 93807298 to 93807404 106 + snRNA gene predicted gene, 26239
Tssr95285 10 93819976 to 93819985 9 + TSS region transcription start site region 95285
Tssr98976 10 93820811 to 93820824 13 - TSS region transcription start site region 98976
Tssr95286 10 93831441 to 93831452 11 + TSS region transcription start site region 95286
Usp44 10 93831555 to 93858088 26533 + protein coding gene ubiquitin specific peptidase 44
Cpgi2117 10 93833404 to 93834521 1117 CpG island CpG island 2117
Tssr95287 10 93833782 to 93833817 35 + TSS region transcription start site region 95287
Tssr95288 10 93833818 to 93833830 12 + TSS region transcription start site region 95288
Tssr95289 10 93833841 to 93833861 20 + TSS region transcription start site region 95289
Tssr95290 10 93833909 to 93833953 44 + TSS region transcription start site region 95290
Tssr98977 10 93844801 to 93844851 50 - TSS region transcription start site region 98977
Cpgi2118 10 93845865 to 93846670 805 CpG island CpG island 2118
Metap2 10 93858489 to 93897090 38601 - protein coding gene methionine aminopeptidase 2
Tssr98978 10 93875071 to 93875077 6 - TSS region transcription start site region 98978
Cpgi2119 10 93888800 to 93890231 1431 CpG island CpG island 2119
Tssr98979 10 93889609 to 93889619 10 - TSS region transcription start site region 98979
Tssr98980 10 93889704 to 93889727 23 - TSS region transcription start site region 98980
Tssr98981 10 93889758 to 93889826 68 - TSS region transcription start site region 98981
Tssr98982 10 93889969 to 93889987 18 - TSS region transcription start site region 98982
Tssr98983 10 93891117 to 93891136 19 - TSS region transcription start site region 98983
Tssr98984 10 93891141 to 93891194 53 - TSS region transcription start site region 98984
Tssr95291 10 93897156 to 93897161 5 + TSS region transcription start site region 95291
4930471D02Rik 10 93897158 to 93901956 4798 + lincRNA gene RIKEN cDNA 4930471D02 gene
Tssr95292 10 93897164 to 93897175 11 + TSS region transcription start site region 95292
Cpgi2120 10 93907837 to 93908117 280 CpG island CpG island 2120
Gm25962 10 93916169 to 93916336 167 - snoRNA gene predicted gene, 25962
Gm48126 10 93919090 to 93936270 17180 + pseudogene predicted gene, 48126
Vezt 10 93961522 to 94035799 74277 - protein coding gene vezatin, adherens junctions transmembrane protein
Mir331 10 93963768 to 93963863 95 - miRNA gene microRNA 331
Gm48191 10 94028081 to 94028365 284 + pseudogene predicted gene, 48191
Gm49628 10 94034012 to 94035801 1789 - unclassified gene predicted gene, 49628
Cpgi2121 10 94035306 to 94036788 1482 CpG island CpG island 2121
Tssr95293 10 94035449 to 94035471 22 + TSS region transcription start site region 95293
Tssr98985 10 94035728 to 94035769 41 - TSS region transcription start site region 98985
Tssr98986 10 94035771 to 94035787 16 - TSS region transcription start site region 98986
Tssr98987 10 94035789 to 94035816 27 - TSS region transcription start site region 98987
Fgd6 10 94036001 to 94145339 109338 + protein coding gene FYVE, RhoGEF and PH domain containing 6
Tssr95294 10 94036044 to 94036055 11 + TSS region transcription start site region 95294
Tssr95295 10 94036057 to 94036121 64 + TSS region transcription start site region 95295
Tssr3327 10 94036364 to 94036375 11 + TSS region transcription start site region 3327
Tssr98988 10 94036723 to 94036749 26 - TSS region transcription start site region 98988
Tssr95296 10 94036946 to 94036981 35 + TSS region transcription start site region 95296
Tssr95297 10 94057361 to 94057366 5 + TSS region transcription start site region 95297
Tssr95298 10 94073396 to 94073415 19 + TSS region transcription start site region 95298
Tssr95299 10 94074039 to 94074044 5 + TSS region transcription start site region 95299
Tssr95300 10 94083861 to 94083862 1 + TSS region transcription start site region 95300
Gm18391 10 94097483 to 94098140 657 - pseudogene predicted gene, 18391
D10Mit41 10 94102654 to 94102897 243 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 41
Gm48372 10 94108739 to 94111153 2414 + unclassified gene predicted gene, 48372
Tssr95301 10 94114714 to 94114728 14 + TSS region transcription start site region 95301
Tssr95302 10 94133348 to 94133360 12 + TSS region transcription start site region 95302
Tssr95303 10 94141298 to 94141328 30 + TSS region transcription start site region 95303
Tssr95304 10 94142838 to 94142849 11 + TSS region transcription start site region 95304
Cpgi2122 10 94147601 to 94148494 893 CpG island CpG island 2122
Tssr95305 10 94147907 to 94147966 59 + TSS region transcription start site region 95305
Tssr95306 10 94147982 to 94148009 27 + TSS region transcription start site region 95306
Nr2c1 10 94148023 to 94197211 49188 + protein coding gene nuclear receptor subfamily 2, group C, member 1
Tssr95307 10 94162278 to 94162297 19 + TSS region transcription start site region 95307
Cpgi2123 10 94165498 to 94165688 190 CpG island CpG island 2123
Gm26122 10 94184492 to 94184573 81 - snRNA gene predicted gene, 26122
Cpgi2124 10 94198831 to 94199552 721 CpG island CpG island 2124
Ndufa12 10 94199009 to 94220948 21939 + protein coding gene NADH:ubiquinone oxidoreductase subunit A12
Tssr95308 10 94199027 to 94199043 16 + TSS region transcription start site region 95308
Gm32749 10 94230565 to 94238611 8046 - lncRNA gene predicted gene, 32749
Cpgi2125 10 94230648 to 94230832 184 CpG island CpG island 2125
Gm4792 10 94293665 to 94298703 5038 - protein coding gene predicted gene 4792
Tssr98989 10 94298585 to 94298613 28 - TSS region transcription start site region 98989
Tssr98990 10 94298650 to 94298659 9 - TSS region transcription start site region 98990
Cpgi2126 10 94311637 to 94312486 849 CpG island CpG island 2126
Tssr95309 10 94311896 to 94311942 46 + TSS region transcription start site region 95309
Tssr95310 10 94311944 to 94311978 34 + TSS region transcription start site region 95310
Tmcc3 10 94311949 to 94590956 279007 + protein coding gene transmembrane and coiled coil domains 3
Tssr95311 10 94312149 to 94312162 13 + TSS region transcription start site region 95311
Tssr98991 10 94312582 to 94312593 11 - TSS region transcription start site region 98991
Tssr95312 10 94338745 to 94338755 10 + TSS region transcription start site region 95312
Tssr95313 10 94354526 to 94354530 4 + TSS region transcription start site region 95313
Tssr95314 10 94356793 to 94356804 11 + TSS region transcription start site region 95314
Tssr95315 10 94356976 to 94357038 62 + TSS region transcription start site region 95315
Tssr95316 10 94357041 to 94357057 16 + TSS region transcription start site region 95316
Tssr95317 10 94357059 to 94357077 18 + TSS region transcription start site region 95317
Tssr95318 10 94406188 to 94406225 37 + TSS region transcription start site region 95318
Gm16155 10 94408891 to 94410732 1841 + sense intronic lncRNA gene predicted gene 16155
Gm32827 10 94417965 to 94428628 10663 - lncRNA gene predicted gene, 32827
Cpgi2127 10 94427011 to 94427165 154 CpG island CpG island 2127
Tssr98992 10 94433072 to 94433074 2 - TSS region transcription start site region 98992
Tssr95319 10 94435474 to 94435517 43 + TSS region transcription start site region 95319
Tssr95320 10 94463836 to 94463841 5 + TSS region transcription start site region 95320
Tssr95321 10 94467908 to 94467933 25 + TSS region transcription start site region 95321
Tssr95322 10 94476610 to 94476621 11 + TSS region transcription start site region 95322
Tssr98993 10 94479579 to 94479597 18 - TSS region transcription start site region 98993
Tssr95323 10 94493212 to 94493223 11 + TSS region transcription start site region 95323
Tssr95324 10 94498916 to 94498924 8 + TSS region transcription start site region 95324
Tssr95325 10 94499069 to 94499077 8 + TSS region transcription start site region 95325
Tssr95326 10 94499317 to 94499328 11 + TSS region transcription start site region 95326
Gm40743 10 94512851 to 94514779 1928 - lncRNA gene predicted gene, 40743
Cpgi2128 10 94514406 to 94515672 1266 CpG island CpG island 2128
Tssr95327 10 94514825 to 94514922 97 + TSS region transcription start site region 95327
Tssr95328 10 94514950 to 94514964 14 + TSS region transcription start site region 95328
Tssr95329 10 94515006 to 94515017 11 + TSS region transcription start site region 95329
D10Mit177 10 94528025 to 94528166 141 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 177
Tssr95330 10 94550819 to 94550833 14 + TSS region transcription start site region 95330
Tssr95331 10 94550865 to 94550876 11 + TSS region transcription start site region 95331
Tssr95332 10 94550914 to 94550934 20 + TSS region transcription start site region 95332
Tssr95333 10 94550945 to 94550962 17 + TSS region transcription start site region 95333
Tssr95334 10 94550965 to 94550976 11 + TSS region transcription start site region 95334
D10Mit309 10 94551781 to 94551914 133 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-309
Tmcc3os 10 94567828 to 94612084 44256 - antisense lncRNA gene transmembrane and coiled coil domains 3, opposite strand
Tssr95335 10 94568128 to 94568144 16 + TSS region transcription start site region 95335
Tssr95336 10 94575108 to 94575119 11 + TSS region transcription start site region 95336
Tssr95337 10 94575272 to 94575295 23 + TSS region transcription start site region 95337
Tssr95338 10 94575305 to 94575325 20 + TSS region transcription start site region 95338
Tssr95339 10 94575339 to 94575352 13 + TSS region transcription start site region 95339
Tssr95340 10 94576217 to 94576220 3 + TSS region transcription start site region 95340
Tssr95341 10 94576254 to 94576270 16 + TSS region transcription start site region 95341
Mir7211 10 94586137 to 94586199 62 - miRNA gene microRNA 7211
Gm32898 10 94600050 to 94623704 23654 - lncRNA gene predicted gene, 32898
Gm48657 10 94620540 to 94648657 28117 + lincRNA gene predicted gene, 48657
Gm48658 10 94652796 to 94653052 256 - pseudogene predicted gene, 48658
Cep83os 10 94673493 to 94688613 15120 - bidirectional promoter lncRNA gene centrosomal protein 83, opposite strand
Gm49167 10 94685705 to 94688619 2914 + unclassified gene predicted gene, 49167
Cpgi2129 10 94688146 to 94689338 1192 CpG island CpG island 2129
Cep83 10 94688498 to 94790336 101838 + protein coding gene centrosomal protein 83
Tssr98994 10 94688555 to 94688612 57 - TSS region transcription start site region 98994
Tssr95342 10 94688619 to 94688641 22 + TSS region transcription start site region 95342
Tssr95343 10 94688647 to 94688682 35 + TSS region transcription start site region 95343
Tssr95344 10 94688739 to 94688808 69 + TSS region transcription start site region 95344
Tssr98995 10 94711144 to 94711145 1 - TSS region transcription start site region 98995
Tssr95345 10 94719693 to 94719717 24 + TSS region transcription start site region 95345
Tssr95346 10 94725645 to 94725657 12 + TSS region transcription start site region 95346
Tssr95347 10 94750340 to 94750374 34 + TSS region transcription start site region 95347
Gm48689 10 94781974 to 94787161 5187 - antisense lncRNA gene predicted gene, 48689
Plxnc1 10 94790866 to 94944835 153969 - protein coding gene plexin C1
Tssr98996 10 94792045 to 94792049 4 - TSS region transcription start site region 98996
B405C9T 10 94819229 to 94819470 241 DNA segment DNA segment, B405C9T
Gm24186 10 94821529 to 94821655 126 - rRNA gene predicted gene, 24186
Tssr98997 10 94829455 to 94829483 28 - TSS region transcription start site region 98997
Tssr98998 10 94829511 to 94829532 21 - TSS region transcription start site region 98998
Tssr95348 10 94846980 to 94846984 4 + TSS region transcription start site region 95348
Tssr98999 10 94855481 to 94855502 21 - TSS region transcription start site region 98999
Tssr99000 10 94855556 to 94855573 17 - TSS region transcription start site region 99000
Gm48718 10 94881311 to 94883792 2481 - unclassified gene predicted gene, 48718
Cpgi2130 10 94943386 to 94945564 2178 CpG island CpG island 2130
Tssr99001 10 94943788 to 94943859 71 - TSS region transcription start site region 99001
Tssr99002 10 94943873 to 94943887 14 - TSS region transcription start site region 99002
Tssr99003 10 94944170 to 94944235 65 - TSS region transcription start site region 99003
Tssr99004 10 94944535 to 94944546 11 - TSS region transcription start site region 99004
Tssr99005 10 94944790 to 94944831 41 - TSS region transcription start site region 99005
Tssr99006 10 94944835 to 94944862 27 - TSS region transcription start site region 99006
Tssr99007 10 94944865 to 94944891 26 - TSS region transcription start site region 99007
Tssr99008 10 94944923 to 94944939 16 - TSS region transcription start site region 99008
Tssr99009 10 94944962 to 94944992 30 - TSS region transcription start site region 99009
Gm25266 10 94948590 to 94948893 303 + unclassified non-coding RNA gene predicted gene, 25266
Cpgi2131 10 94950676 to 94950928 252 CpG island CpG island 2131
Tssr99010 10 94950785 to 94950786 1 - TSS region transcription start site region 99010
Tssr99011 10 94961476 to 94961481 5 - TSS region transcription start site region 99011
Gm40744 10 94961637 to 94965244 3607 + lncRNA gene predicted gene, 40744
Tssr95349 10 94961675 to 94961686 11 + TSS region transcription start site region 95349
Cpgi2132 10 94991624 to 94991861 237 CpG island CpG island 2132
Gm48867 10 94993952 to 94999442 5490 - lincRNA gene predicted gene, 48867
D10Mit69 10 95101525 to 95101674 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 69
Cpgi2133 10 95110988 to 95111438 450 CpG island CpG island 2133
Gm48868 10 95116379 to 95117731 1352 + unclassified gene predicted gene, 48868
Tssr95350 10 95117891 to 95117896 5 + TSS region transcription start site region 95350
Gm29684 10 95120582 to 95145825 25243 - lincRNA gene predicted gene, 29684
Gm33091 10 95134290 to 95136874 2584 - lincRNA gene predicted gene, 33091
Tssr99012 10 95145398 to 95145414 16 - TSS region transcription start site region 99012
Tssr99013 10 95145535 to 95145547 12 - TSS region transcription start site region 99013
Tssr99014 10 95145801 to 95145815 14 - TSS region transcription start site region 99014
Tssr99015 10 95145828 to 95145847 19 - TSS region transcription start site region 99015
Gm48874 10 95160361 to 95165660 5299 + unclassified gene predicted gene, 48874
Cradd 10 95174746 to 95324133 149387 - protein coding gene CASP2 and RIPK1 domain containing adaptor with death domain
Tssr99016 10 95175993 to 95176025 32 - TSS region transcription start site region 99016
Tssr3328 10 95180323 to 95180347 24 + TSS region transcription start site region 3328
Tssr95351 10 95218017 to 95218028 11 + TSS region transcription start site region 95351
Tssr99017 10 95232706 to 95232709 3 - TSS region transcription start site region 99017
Cpgi2134 10 95251814 to 95252168 354 CpG island CpG island 2134
A630089K24Rik 10 95261228 to 95267012 5784 unclassified gene RIKEN cDNA A630089K24 gene
Cpgi2135 10 95264653 to 95265031 378 CpG island CpG island 2135
Tssr99018 10 95264951 to 95264961 10 - TSS region transcription start site region 99018
Tssr99019 10 95264966 to 95264987 21 - TSS region transcription start site region 99019
Tssr95352 10 95265194 to 95265209 15 + TSS region transcription start site region 95352
Tssr99020 10 95267147 to 95267167 20 - TSS region transcription start site region 99020
Tssr99021 10 95298637 to 95298642 5 - TSS region transcription start site region 99021
Gm48880 10 95312870 to 95314853 1983 - unclassified gene predicted gene, 48880
Gm48882 10 95318247 to 95324358 6111 + antisense lncRNA gene predicted gene, 48882
Tssr95353 10 95318457 to 95318467 10 + TSS region transcription start site region 95353
Tssr95354 10 95319270 to 95319283 13 + TSS region transcription start site region 95354
Tssr95355 10 95319291 to 95319301 10 + TSS region transcription start site region 95355
Tssr99022 10 95319996 to 95320014 18 - TSS region transcription start site region 99022
Tssr99023 10 95322979 to 95322985 6 - TSS region transcription start site region 99023
Cpgi2136 10 95323411 to 95324075 664 CpG island CpG island 2136
Tssr99024 10 95323532 to 95323545 13 - TSS region transcription start site region 99024
Tssr99025 10 95323550 to 95323610 60 - TSS region transcription start site region 99025
Tssr99026 10 95323993 to 95324008 15 - TSS region transcription start site region 99026
Tssr99027 10 95324072 to 95324114 42 - TSS region transcription start site region 99027
Tssr99028 10 95324126 to 95324144 18 - TSS region transcription start site region 99028
Tssr99029 10 95324146 to 95324157 11 - TSS region transcription start site region 99029