Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:93557654-94647897

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc38 10 93540632 to 93584327 43695 + protein coding gene coiled-coil domain containing 38
Tssr95274 10 93578571 to 93578586 15 + TSS region transcription start site region 95274
Snrpf 10 93583029 to 93589658 6629 - protein coding gene small nuclear ribonucleoprotein polypeptide F
Cpgi2114 10 93589071 to 93589911 840 CpG island CpG island 2114
4933408J17Rik 10 93589413 to 93605245 15832 + lincRNA gene RIKEN cDNA 4933408J17 gene
Tssr98973 10 93589621 to 93589681 60 - TSS region transcription start site region 98973
Tssr3326 10 93589691 to 93589705 14 - TSS region transcription start site region 3326
Tssr98974 10 93594103 to 93594140 37 - TSS region transcription start site region 98974
Cpgi2115 10 93594138 to 93594565 427 CpG island CpG island 2115
Tssr95275 10 93595960 to 93596003 43 + TSS region transcription start site region 95275
Gm47156 10 93618862 to 93634323 15461 + lincRNA gene predicted gene, 47156
Cpgi2116 10 93640578 to 93642241 1663 CpG island CpG island 2116
Tssr95276 10 93640977 to 93641002 25 + TSS region transcription start site region 95276
Tssr95277 10 93641005 to 93641034 29 + TSS region transcription start site region 95277
Tssr95278 10 93641041 to 93641056 15 + TSS region transcription start site region 95278
Ntn4 10 93641049 to 93745972 104923 + protein coding gene netrin 4
Tssr95279 10 93641170 to 93641216 46 + TSS region transcription start site region 95279
Gm8580 10 93665383 to 93665846 463 - pseudogene predicted gene 8580
Gm15915 10 93674218 to 93683322 9104 - antisense lncRNA gene predicted gene 15915
Tssr95280 10 93678730 to 93678733 3 + TSS region transcription start site region 95280
Tssr95281 10 93682476 to 93682487 11 + TSS region transcription start site region 95281
Tssr98975 10 93683335 to 93683349 14 - TSS region transcription start site region 98975
Tssr95282 10 93691095 to 93691096 1 + TSS region transcription start site region 95282
Tssr95283 10 93700685 to 93700708 23 + TSS region transcription start site region 95283
Gm15963 10 93726726 to 93728207 1481 - antisense lncRNA gene predicted gene 15963
Tssr95284 10 93778603 to 93778629 26 + TSS region transcription start site region 95284
Gm3571 10 93778660 to 93779719 1059 + pseudogene predicted gene 3571
Gm26239 10 93807298 to 93807404 106 + snRNA gene predicted gene, 26239
Tssr95285 10 93819976 to 93819985 9 + TSS region transcription start site region 95285
Tssr98976 10 93820811 to 93820824 13 - TSS region transcription start site region 98976
Tssr95286 10 93831441 to 93831452 11 + TSS region transcription start site region 95286
Usp44 10 93831555 to 93858088 26533 + protein coding gene ubiquitin specific peptidase 44
Cpgi2117 10 93833404 to 93834521 1117 CpG island CpG island 2117
Tssr95287 10 93833782 to 93833817 35 + TSS region transcription start site region 95287
Tssr95288 10 93833818 to 93833830 12 + TSS region transcription start site region 95288
Tssr95289 10 93833841 to 93833861 20 + TSS region transcription start site region 95289
Tssr95290 10 93833909 to 93833953 44 + TSS region transcription start site region 95290
Tssr98977 10 93844801 to 93844851 50 - TSS region transcription start site region 98977
Cpgi2118 10 93845865 to 93846670 805 CpG island CpG island 2118
Metap2 10 93858489 to 93897090 38601 - protein coding gene methionine aminopeptidase 2
Tssr98978 10 93875071 to 93875077 6 - TSS region transcription start site region 98978
Cpgi2119 10 93888800 to 93890231 1431 CpG island CpG island 2119
Tssr98979 10 93889609 to 93889619 10 - TSS region transcription start site region 98979
Tssr98980 10 93889704 to 93889727 23 - TSS region transcription start site region 98980
Tssr98981 10 93889758 to 93889826 68 - TSS region transcription start site region 98981
Tssr98982 10 93889969 to 93889987 18 - TSS region transcription start site region 98982
Tssr98983 10 93891117 to 93891136 19 - TSS region transcription start site region 98983
Tssr98984 10 93891141 to 93891194 53 - TSS region transcription start site region 98984
Tssr95291 10 93897156 to 93897161 5 + TSS region transcription start site region 95291
4930471D02Rik 10 93897158 to 93901956 4798 + lincRNA gene RIKEN cDNA 4930471D02 gene
Tssr95292 10 93897164 to 93897175 11 + TSS region transcription start site region 95292
Cpgi2120 10 93907837 to 93908117 280 CpG island CpG island 2120
Gm25962 10 93916169 to 93916336 167 - snoRNA gene predicted gene, 25962
Gm48126 10 93919090 to 93936270 17180 + pseudogene predicted gene, 48126
Vezt 10 93961522 to 94035799 74277 - protein coding gene vezatin, adherens junctions transmembrane protein
Mir331 10 93963768 to 93963863 95 - miRNA gene microRNA 331
Gm48191 10 94028081 to 94028365 284 + pseudogene predicted gene, 48191
Gm49628 10 94034012 to 94035801 1789 - unclassified gene predicted gene, 49628
Cpgi2121 10 94035306 to 94036788 1482 CpG island CpG island 2121
Tssr95293 10 94035449 to 94035471 22 + TSS region transcription start site region 95293
Tssr98985 10 94035728 to 94035769 41 - TSS region transcription start site region 98985
Tssr98986 10 94035771 to 94035787 16 - TSS region transcription start site region 98986
Tssr98987 10 94035789 to 94035816 27 - TSS region transcription start site region 98987
Fgd6 10 94036001 to 94145339 109338 + protein coding gene FYVE, RhoGEF and PH domain containing 6
Tssr95294 10 94036044 to 94036055 11 + TSS region transcription start site region 95294
Tssr95295 10 94036057 to 94036121 64 + TSS region transcription start site region 95295
Tssr3327 10 94036364 to 94036375 11 + TSS region transcription start site region 3327
Tssr98988 10 94036723 to 94036749 26 - TSS region transcription start site region 98988
Tssr95296 10 94036946 to 94036981 35 + TSS region transcription start site region 95296
Tssr95297 10 94057361 to 94057366 5 + TSS region transcription start site region 95297
Tssr95298 10 94073396 to 94073415 19 + TSS region transcription start site region 95298
Tssr95299 10 94074039 to 94074044 5 + TSS region transcription start site region 95299
Tssr95300 10 94083861 to 94083862 1 + TSS region transcription start site region 95300
Gm18391 10 94097483 to 94098140 657 - pseudogene predicted gene, 18391
D10Mit41 10 94102654 to 94102897 243 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 41
Gm48372 10 94108739 to 94111153 2414 + unclassified gene predicted gene, 48372
Tssr95301 10 94114714 to 94114728 14 + TSS region transcription start site region 95301
Tssr95302 10 94133348 to 94133360 12 + TSS region transcription start site region 95302
Tssr95303 10 94141298 to 94141328 30 + TSS region transcription start site region 95303
Tssr95304 10 94142838 to 94142849 11 + TSS region transcription start site region 95304
Cpgi2122 10 94147601 to 94148494 893 CpG island CpG island 2122
Tssr95305 10 94147907 to 94147966 59 + TSS region transcription start site region 95305
Tssr95306 10 94147982 to 94148009 27 + TSS region transcription start site region 95306
Nr2c1 10 94148023 to 94197211 49188 + protein coding gene nuclear receptor subfamily 2, group C, member 1
Tssr95307 10 94162278 to 94162297 19 + TSS region transcription start site region 95307
Cpgi2123 10 94165498 to 94165688 190 CpG island CpG island 2123
Gm26122 10 94184492 to 94184573 81 - snRNA gene predicted gene, 26122
Cpgi2124 10 94198831 to 94199552 721 CpG island CpG island 2124
Ndufa12 10 94199009 to 94220948 21939 + protein coding gene NADH:ubiquinone oxidoreductase subunit A12
Tssr95308 10 94199027 to 94199043 16 + TSS region transcription start site region 95308
Gm32749 10 94230565 to 94238611 8046 - lncRNA gene predicted gene, 32749
Cpgi2125 10 94230648 to 94230832 184 CpG island CpG island 2125
Gm4792 10 94293665 to 94298703 5038 - protein coding gene predicted gene 4792
Tssr98989 10 94298585 to 94298613 28 - TSS region transcription start site region 98989
Tssr98990 10 94298650 to 94298659 9 - TSS region transcription start site region 98990
Cpgi2126 10 94311637 to 94312486 849 CpG island CpG island 2126
Tssr95309 10 94311896 to 94311942 46 + TSS region transcription start site region 95309
Tssr95310 10 94311944 to 94311978 34 + TSS region transcription start site region 95310
Tmcc3 10 94311949 to 94590956 279007 + protein coding gene transmembrane and coiled coil domains 3
Tssr95311 10 94312149 to 94312162 13 + TSS region transcription start site region 95311
Tssr98991 10 94312582 to 94312593 11 - TSS region transcription start site region 98991
Tssr95312 10 94338745 to 94338755 10 + TSS region transcription start site region 95312
Tssr95313 10 94354526 to 94354530 4 + TSS region transcription start site region 95313
Tssr95314 10 94356793 to 94356804 11 + TSS region transcription start site region 95314
Tssr95315 10 94356976 to 94357038 62 + TSS region transcription start site region 95315
Tssr95316 10 94357041 to 94357057 16 + TSS region transcription start site region 95316
Tssr95317 10 94357059 to 94357077 18 + TSS region transcription start site region 95317
Tssr95318 10 94406188 to 94406225 37 + TSS region transcription start site region 95318
Gm16155 10 94408891 to 94410732 1841 + sense intronic lncRNA gene predicted gene 16155
Gm32827 10 94417965 to 94428628 10663 - lncRNA gene predicted gene, 32827
Cpgi2127 10 94427011 to 94427165 154 CpG island CpG island 2127
Tssr98992 10 94433072 to 94433074 2 - TSS region transcription start site region 98992
Tssr95319 10 94435474 to 94435517 43 + TSS region transcription start site region 95319
Tssr95320 10 94463836 to 94463841 5 + TSS region transcription start site region 95320
Tssr95321 10 94467908 to 94467933 25 + TSS region transcription start site region 95321
Tssr95322 10 94476610 to 94476621 11 + TSS region transcription start site region 95322
Tssr98993 10 94479579 to 94479597 18 - TSS region transcription start site region 98993
Tssr95323 10 94493212 to 94493223 11 + TSS region transcription start site region 95323
Tssr95324 10 94498916 to 94498924 8 + TSS region transcription start site region 95324
Tssr95325 10 94499069 to 94499077 8 + TSS region transcription start site region 95325
Tssr95326 10 94499317 to 94499328 11 + TSS region transcription start site region 95326
Gm40743 10 94512851 to 94514779 1928 - lncRNA gene predicted gene, 40743
Cpgi2128 10 94514406 to 94515672 1266 CpG island CpG island 2128
Tssr95327 10 94514825 to 94514922 97 + TSS region transcription start site region 95327
Tssr95328 10 94514950 to 94514964 14 + TSS region transcription start site region 95328
Tssr95329 10 94515006 to 94515017 11 + TSS region transcription start site region 95329
D10Mit177 10 94528025 to 94528166 141 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 177
Tssr95330 10 94550819 to 94550833 14 + TSS region transcription start site region 95330
Tssr95331 10 94550865 to 94550876 11 + TSS region transcription start site region 95331
Tssr95332 10 94550914 to 94550934 20 + TSS region transcription start site region 95332
Tssr95333 10 94550945 to 94550962 17 + TSS region transcription start site region 95333
Tssr95334 10 94550965 to 94550976 11 + TSS region transcription start site region 95334
D10Mit309 10 94551781 to 94551914 133 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-309
Tmcc3os 10 94567828 to 94612084 44256 - antisense lncRNA gene transmembrane and coiled coil domains 3, opposite strand
Tssr95335 10 94568128 to 94568144 16 + TSS region transcription start site region 95335
Tssr95336 10 94575108 to 94575119 11 + TSS region transcription start site region 95336
Tssr95337 10 94575272 to 94575295 23 + TSS region transcription start site region 95337
Tssr95338 10 94575305 to 94575325 20 + TSS region transcription start site region 95338
Tssr95339 10 94575339 to 94575352 13 + TSS region transcription start site region 95339
Tssr95340 10 94576217 to 94576220 3 + TSS region transcription start site region 95340
Tssr95341 10 94576254 to 94576270 16 + TSS region transcription start site region 95341
Mir7211 10 94586137 to 94586199 62 - miRNA gene microRNA 7211
Gm32898 10 94600050 to 94623704 23654 - lncRNA gene predicted gene, 32898
Gm48657 10 94620540 to 94648657 28117 + lincRNA gene predicted gene, 48657