Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:93540071-94210077

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2112 10 93539731 to 93540146 415 CpG island CpG island 2112
Cpgi2113 10 93540416 to 93540758 342 CpG island CpG island 2113
Tssr95269 10 93540605 to 93540614 9 + TSS region transcription start site region 95269
Tssr95270 10 93540626 to 93540653 27 + TSS region transcription start site region 95270
Ccdc38 10 93540632 to 93584327 43695 + protein coding gene coiled-coil domain containing 38
Tssr95271 10 93551829 to 93551830 1 + TSS region transcription start site region 95271
Tssr95272 10 93554862 to 93554866 4 + TSS region transcription start site region 95272
Tssr95273 10 93554878 to 93554886 8 + TSS region transcription start site region 95273
Tssr95274 10 93578571 to 93578586 15 + TSS region transcription start site region 95274
Snrpf 10 93583029 to 93589658 6629 - protein coding gene small nuclear ribonucleoprotein polypeptide F
Cpgi2114 10 93589071 to 93589911 840 CpG island CpG island 2114
4933408J17Rik 10 93589413 to 93605245 15832 + lincRNA gene RIKEN cDNA 4933408J17 gene
Tssr98973 10 93589621 to 93589681 60 - TSS region transcription start site region 98973
Tssr3326 10 93589691 to 93589705 14 - TSS region transcription start site region 3326
Tssr98974 10 93594103 to 93594140 37 - TSS region transcription start site region 98974
Cpgi2115 10 93594138 to 93594565 427 CpG island CpG island 2115
Tssr95275 10 93595960 to 93596003 43 + TSS region transcription start site region 95275
Gm47156 10 93618862 to 93634323 15461 + lincRNA gene predicted gene, 47156
Cpgi2116 10 93640578 to 93642241 1663 CpG island CpG island 2116
Tssr95276 10 93640977 to 93641002 25 + TSS region transcription start site region 95276
Tssr95277 10 93641005 to 93641034 29 + TSS region transcription start site region 95277
Tssr95278 10 93641041 to 93641056 15 + TSS region transcription start site region 95278
Ntn4 10 93641049 to 93745972 104923 + protein coding gene netrin 4
Tssr95279 10 93641170 to 93641216 46 + TSS region transcription start site region 95279
Gm8580 10 93665383 to 93665846 463 - pseudogene predicted gene 8580
Gm15915 10 93674218 to 93683322 9104 - antisense lncRNA gene predicted gene 15915
Tssr95280 10 93678730 to 93678733 3 + TSS region transcription start site region 95280
Tssr95281 10 93682476 to 93682487 11 + TSS region transcription start site region 95281
Tssr98975 10 93683335 to 93683349 14 - TSS region transcription start site region 98975
Tssr95282 10 93691095 to 93691096 1 + TSS region transcription start site region 95282
Tssr95283 10 93700685 to 93700708 23 + TSS region transcription start site region 95283
Gm15963 10 93726726 to 93728207 1481 - antisense lncRNA gene predicted gene 15963
Tssr95284 10 93778603 to 93778629 26 + TSS region transcription start site region 95284
Gm3571 10 93778660 to 93779719 1059 + pseudogene predicted gene 3571
Gm26239 10 93807298 to 93807404 106 + snRNA gene predicted gene, 26239
Tssr95285 10 93819976 to 93819985 9 + TSS region transcription start site region 95285
Tssr98976 10 93820811 to 93820824 13 - TSS region transcription start site region 98976
Tssr95286 10 93831441 to 93831452 11 + TSS region transcription start site region 95286
Usp44 10 93831555 to 93858088 26533 + protein coding gene ubiquitin specific peptidase 44
Cpgi2117 10 93833404 to 93834521 1117 CpG island CpG island 2117
Tssr95287 10 93833782 to 93833817 35 + TSS region transcription start site region 95287
Tssr95288 10 93833818 to 93833830 12 + TSS region transcription start site region 95288
Tssr95289 10 93833841 to 93833861 20 + TSS region transcription start site region 95289
Tssr95290 10 93833909 to 93833953 44 + TSS region transcription start site region 95290
Tssr98977 10 93844801 to 93844851 50 - TSS region transcription start site region 98977
Cpgi2118 10 93845865 to 93846670 805 CpG island CpG island 2118
Metap2 10 93858489 to 93897090 38601 - protein coding gene methionine aminopeptidase 2
Tssr98978 10 93875071 to 93875077 6 - TSS region transcription start site region 98978
Cpgi2119 10 93888800 to 93890231 1431 CpG island CpG island 2119
Tssr98979 10 93889609 to 93889619 10 - TSS region transcription start site region 98979
Tssr98980 10 93889704 to 93889727 23 - TSS region transcription start site region 98980
Tssr98981 10 93889758 to 93889826 68 - TSS region transcription start site region 98981
Tssr98982 10 93889969 to 93889987 18 - TSS region transcription start site region 98982
Tssr98983 10 93891117 to 93891136 19 - TSS region transcription start site region 98983
Tssr98984 10 93891141 to 93891194 53 - TSS region transcription start site region 98984
Tssr95291 10 93897156 to 93897161 5 + TSS region transcription start site region 95291
4930471D02Rik 10 93897158 to 93901956 4798 + lincRNA gene RIKEN cDNA 4930471D02 gene
Tssr95292 10 93897164 to 93897175 11 + TSS region transcription start site region 95292
Cpgi2120 10 93907837 to 93908117 280 CpG island CpG island 2120
Gm25962 10 93916169 to 93916336 167 - snoRNA gene predicted gene, 25962
Gm48126 10 93919090 to 93936270 17180 + pseudogene predicted gene, 48126
Vezt 10 93961522 to 94035799 74277 - protein coding gene vezatin, adherens junctions transmembrane protein
Mir331 10 93963768 to 93963863 95 - miRNA gene microRNA 331
Gm48191 10 94028081 to 94028365 284 + pseudogene predicted gene, 48191
Gm49628 10 94034012 to 94035801 1789 - unclassified gene predicted gene, 49628
Cpgi2121 10 94035306 to 94036788 1482 CpG island CpG island 2121
Tssr95293 10 94035449 to 94035471 22 + TSS region transcription start site region 95293
Tssr98985 10 94035728 to 94035769 41 - TSS region transcription start site region 98985
Tssr98986 10 94035771 to 94035787 16 - TSS region transcription start site region 98986
Tssr98987 10 94035789 to 94035816 27 - TSS region transcription start site region 98987
Fgd6 10 94036001 to 94145339 109338 + protein coding gene FYVE, RhoGEF and PH domain containing 6
Tssr95294 10 94036044 to 94036055 11 + TSS region transcription start site region 95294
Tssr95295 10 94036057 to 94036121 64 + TSS region transcription start site region 95295
Tssr3327 10 94036364 to 94036375 11 + TSS region transcription start site region 3327
Tssr98988 10 94036723 to 94036749 26 - TSS region transcription start site region 98988
Tssr95296 10 94036946 to 94036981 35 + TSS region transcription start site region 95296
Tssr95297 10 94057361 to 94057366 5 + TSS region transcription start site region 95297
Tssr95298 10 94073396 to 94073415 19 + TSS region transcription start site region 95298
Tssr95299 10 94074039 to 94074044 5 + TSS region transcription start site region 95299
Tssr95300 10 94083861 to 94083862 1 + TSS region transcription start site region 95300
Gm18391 10 94097483 to 94098140 657 - pseudogene predicted gene, 18391
D10Mit41 10 94102654 to 94102897 243 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 41
Gm48372 10 94108739 to 94111153 2414 + unclassified gene predicted gene, 48372
Tssr95301 10 94114714 to 94114728 14 + TSS region transcription start site region 95301
Tssr95302 10 94133348 to 94133360 12 + TSS region transcription start site region 95302
Tssr95303 10 94141298 to 94141328 30 + TSS region transcription start site region 95303
Tssr95304 10 94142838 to 94142849 11 + TSS region transcription start site region 95304
Cpgi2122 10 94147601 to 94148494 893 CpG island CpG island 2122
Tssr95305 10 94147907 to 94147966 59 + TSS region transcription start site region 95305
Tssr95306 10 94147982 to 94148009 27 + TSS region transcription start site region 95306
Nr2c1 10 94148023 to 94197211 49188 + protein coding gene nuclear receptor subfamily 2, group C, member 1
Tssr95307 10 94162278 to 94162297 19 + TSS region transcription start site region 95307
Cpgi2123 10 94165498 to 94165688 190 CpG island CpG island 2123
Gm26122 10 94184492 to 94184573 81 - snRNA gene predicted gene, 26122
Cpgi2124 10 94198831 to 94199552 721 CpG island CpG island 2124
Ndufa12 10 94199009 to 94220948 21939 + protein coding gene NADH:ubiquinone oxidoreductase subunit A12
Tssr95308 10 94199027 to 94199043 16 + TSS region transcription start site region 95308