Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:93419218-93938322

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40742 10 93430285 to 93431959 1674 - lncRNA gene predicted gene, 40742
Cpgi2109 10 93430855 to 93431188 333 CpG island CpG island 2109
Mir7688 10 93433107 to 93433162 55 + miRNA gene microRNA 7688
Tssr3324 10 93437122 to 93437138 16 + TSS region transcription start site region 3324
n-TDgtc8 10 93452978 to 93453049 71 - tRNA gene nuclear encoded tRNA aspartic acid 8 (anticodon GTC)
Cpgi2110 10 93453054 to 93454039 985 CpG island CpG island 2110
Tssr95259 10 93453382 to 93453397 15 + TSS region transcription start site region 95259
Tssr95260 10 93453402 to 93453470 68 + TSS region transcription start site region 95260
Lta4h 10 93453411 to 93484875 31464 + protein coding gene leukotriene A4 hydrolase
Tssr95261 10 93453472 to 93453483 11 + TSS region transcription start site region 95261
Tssr95262 10 93468136 to 93468158 22 + TSS region transcription start site region 95262
Tssr95263 10 93488766 to 93488774 8 + TSS region transcription start site region 95263
Hal 10 93488768 to 93516761 27993 + protein coding gene histidine ammonia lyase
Tssr95264 10 93489059 to 93489076 17 + TSS region transcription start site region 95264
Tssr95265 10 93501656 to 93501683 27 + TSS region transcription start site region 95265
Tssr95266 10 93504333 to 93504342 9 + TSS region transcription start site region 95266
Tssr98969 10 93516576 to 93516582 6 - TSS region transcription start site region 98969
Tssr95267 10 93516925 to 93516945 20 + TSS region transcription start site region 95267
Tssr95268 10 93516966 to 93516971 5 + TSS region transcription start site region 95268
Tssr3325 10 93519056 to 93519058 2 - TSS region transcription start site region 3325
Amdhd1 10 93523338 to 93540033 16695 - protein coding gene amidohydrolase domain containing 1
Cpgi2111 10 93534334 to 93534688 354 CpG island CpG island 2111
Cpgi2112 10 93539731 to 93540146 415 CpG island CpG island 2112
Tssr98970 10 93539935 to 93539948 13 - TSS region transcription start site region 98970
Tssr98971 10 93539971 to 93540014 43 - TSS region transcription start site region 98971
Tssr98972 10 93540016 to 93540027 11 - TSS region transcription start site region 98972
Cpgi2113 10 93540416 to 93540758 342 CpG island CpG island 2113
Tssr95269 10 93540605 to 93540614 9 + TSS region transcription start site region 95269
Tssr95270 10 93540626 to 93540653 27 + TSS region transcription start site region 95270
Ccdc38 10 93540632 to 93584327 43695 + protein coding gene coiled-coil domain containing 38
Tssr95271 10 93551829 to 93551830 1 + TSS region transcription start site region 95271
Tssr95272 10 93554862 to 93554866 4 + TSS region transcription start site region 95272
Tssr95273 10 93554878 to 93554886 8 + TSS region transcription start site region 95273
Tssr95274 10 93578571 to 93578586 15 + TSS region transcription start site region 95274
Snrpf 10 93583029 to 93589658 6629 - protein coding gene small nuclear ribonucleoprotein polypeptide F
Cpgi2114 10 93589071 to 93589911 840 CpG island CpG island 2114
4933408J17Rik 10 93589413 to 93605245 15832 + lincRNA gene RIKEN cDNA 4933408J17 gene
Tssr98973 10 93589621 to 93589681 60 - TSS region transcription start site region 98973
Tssr3326 10 93589691 to 93589705 14 - TSS region transcription start site region 3326
Tssr98974 10 93594103 to 93594140 37 - TSS region transcription start site region 98974
Cpgi2115 10 93594138 to 93594565 427 CpG island CpG island 2115
Tssr95275 10 93595960 to 93596003 43 + TSS region transcription start site region 95275
Gm47156 10 93618862 to 93634323 15461 + lincRNA gene predicted gene, 47156
Cpgi2116 10 93640578 to 93642241 1663 CpG island CpG island 2116
Tssr95276 10 93640977 to 93641002 25 + TSS region transcription start site region 95276
Tssr95277 10 93641005 to 93641034 29 + TSS region transcription start site region 95277
Tssr95278 10 93641041 to 93641056 15 + TSS region transcription start site region 95278
Ntn4 10 93641049 to 93745972 104923 + protein coding gene netrin 4
Tssr95279 10 93641170 to 93641216 46 + TSS region transcription start site region 95279
Gm8580 10 93665383 to 93665846 463 - pseudogene predicted gene 8580
Gm15915 10 93674218 to 93683322 9104 - antisense lncRNA gene predicted gene 15915
Tssr95280 10 93678730 to 93678733 3 + TSS region transcription start site region 95280
Tssr95281 10 93682476 to 93682487 11 + TSS region transcription start site region 95281
Tssr98975 10 93683335 to 93683349 14 - TSS region transcription start site region 98975
Tssr95282 10 93691095 to 93691096 1 + TSS region transcription start site region 95282
Tssr95283 10 93700685 to 93700708 23 + TSS region transcription start site region 95283
Gm15963 10 93726726 to 93728207 1481 - antisense lncRNA gene predicted gene 15963
Tssr95284 10 93778603 to 93778629 26 + TSS region transcription start site region 95284
Gm3571 10 93778660 to 93779719 1059 + pseudogene predicted gene 3571
Gm26239 10 93807298 to 93807404 106 + snRNA gene predicted gene, 26239
Tssr95285 10 93819976 to 93819985 9 + TSS region transcription start site region 95285
Tssr98976 10 93820811 to 93820824 13 - TSS region transcription start site region 98976
Tssr95286 10 93831441 to 93831452 11 + TSS region transcription start site region 95286
Usp44 10 93831555 to 93858088 26533 + protein coding gene ubiquitin specific peptidase 44
Cpgi2117 10 93833404 to 93834521 1117 CpG island CpG island 2117
Tssr95287 10 93833782 to 93833817 35 + TSS region transcription start site region 95287
Tssr95288 10 93833818 to 93833830 12 + TSS region transcription start site region 95288
Tssr95289 10 93833841 to 93833861 20 + TSS region transcription start site region 95289
Tssr95290 10 93833909 to 93833953 44 + TSS region transcription start site region 95290
Tssr98977 10 93844801 to 93844851 50 - TSS region transcription start site region 98977
Cpgi2118 10 93845865 to 93846670 805 CpG island CpG island 2118
Metap2 10 93858489 to 93897090 38601 - protein coding gene methionine aminopeptidase 2
Tssr98978 10 93875071 to 93875077 6 - TSS region transcription start site region 98978
Cpgi2119 10 93888800 to 93890231 1431 CpG island CpG island 2119
Tssr98979 10 93889609 to 93889619 10 - TSS region transcription start site region 98979
Tssr98980 10 93889704 to 93889727 23 - TSS region transcription start site region 98980
Tssr98981 10 93889758 to 93889826 68 - TSS region transcription start site region 98981
Tssr98982 10 93889969 to 93889987 18 - TSS region transcription start site region 98982
Tssr98983 10 93891117 to 93891136 19 - TSS region transcription start site region 98983
Tssr98984 10 93891141 to 93891194 53 - TSS region transcription start site region 98984
Tssr95291 10 93897156 to 93897161 5 + TSS region transcription start site region 95291
4930471D02Rik 10 93897158 to 93901956 4798 + lincRNA gene RIKEN cDNA 4930471D02 gene
Tssr95292 10 93897164 to 93897175 11 + TSS region transcription start site region 95292
Cpgi2120 10 93907837 to 93908117 280 CpG island CpG island 2120
Gm25962 10 93916169 to 93916336 167 - snoRNA gene predicted gene, 25962
Gm48126 10 93919090 to 93936270 17180 + pseudogene predicted gene, 48126