Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:93271041-94011056

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Elk3 10 93247414 to 93311135 63721 - protein coding gene ELK3, member of ETS oncogene family
D10Mit43 10 93272950 to 93273087 137 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 43
Tssr98959 10 93276534 to 93276546 12 - TSS region transcription start site region 98959
Tssr98960 10 93276558 to 93276573 15 - TSS region transcription start site region 98960
Gm32551 10 93284984 to 93289465 4481 + lncRNA gene predicted gene, 32551
Tssr98961 10 93297833 to 93297839 6 - TSS region transcription start site region 98961
Tssr98962 10 93306110 to 93306112 2 - TSS region transcription start site region 98962
Tssr3322 10 93309082 to 93309102 20 - TSS region transcription start site region 3322
Tssr95255 10 93309710 to 93309724 14 + TSS region transcription start site region 95255
Tssr95256 10 93309885 to 93309891 6 + TSS region transcription start site region 95256
Tssr3323 10 93309904 to 93309924 20 + TSS region transcription start site region 3323
Tssr95257 10 93310023 to 93310064 41 + TSS region transcription start site region 95257
Cpgi2108 10 93310083 to 93311493 1410 CpG island CpG island 2108
Tssr98963 10 93310846 to 93310878 32 - TSS region transcription start site region 98963
Tssr98964 10 93310963 to 93310989 26 - TSS region transcription start site region 98964
Tssr98965 10 93310991 to 93311016 25 - TSS region transcription start site region 98965
Tssr98966 10 93311073 to 93311161 88 - TSS region transcription start site region 98966
Tssr98967 10 93311163 to 93311194 31 - TSS region transcription start site region 98967
Gm32688 10 93317403 to 93322725 5322 + lincRNA gene predicted gene, 32688
Tssr95258 10 93336220 to 93336239 19 + TSS region transcription start site region 95258
Gm17745 10 93336232 to 93348879 12647 + lincRNA gene predicted gene, 17745
Tssr98968 10 93380116 to 93380134 18 - TSS region transcription start site region 98968
Gm47344 10 93397090 to 93397273 183 - pseudogene predicted gene, 47344
Gm40742 10 93430285 to 93431959 1674 - lncRNA gene predicted gene, 40742
Cpgi2109 10 93430855 to 93431188 333 CpG island CpG island 2109
Mir7688 10 93433107 to 93433162 55 + miRNA gene microRNA 7688
Tssr3324 10 93437122 to 93437138 16 + TSS region transcription start site region 3324
n-TDgtc8 10 93452978 to 93453049 71 - tRNA gene nuclear encoded tRNA aspartic acid 8 (anticodon GTC)
Cpgi2110 10 93453054 to 93454039 985 CpG island CpG island 2110
Tssr95259 10 93453382 to 93453397 15 + TSS region transcription start site region 95259
Tssr95260 10 93453402 to 93453470 68 + TSS region transcription start site region 95260
Lta4h 10 93453411 to 93484875 31464 + protein coding gene leukotriene A4 hydrolase
Tssr95261 10 93453472 to 93453483 11 + TSS region transcription start site region 95261
Tssr95262 10 93468136 to 93468158 22 + TSS region transcription start site region 95262
Tssr95263 10 93488766 to 93488774 8 + TSS region transcription start site region 95263
Hal 10 93488768 to 93516761 27993 + protein coding gene histidine ammonia lyase
Tssr95264 10 93489059 to 93489076 17 + TSS region transcription start site region 95264
Tssr95265 10 93501656 to 93501683 27 + TSS region transcription start site region 95265
Tssr95266 10 93504333 to 93504342 9 + TSS region transcription start site region 95266
Tssr98969 10 93516576 to 93516582 6 - TSS region transcription start site region 98969
Tssr95267 10 93516925 to 93516945 20 + TSS region transcription start site region 95267
Tssr95268 10 93516966 to 93516971 5 + TSS region transcription start site region 95268
Tssr3325 10 93519056 to 93519058 2 - TSS region transcription start site region 3325
Amdhd1 10 93523338 to 93540033 16695 - protein coding gene amidohydrolase domain containing 1
Cpgi2111 10 93534334 to 93534688 354 CpG island CpG island 2111
Cpgi2112 10 93539731 to 93540146 415 CpG island CpG island 2112
Tssr98970 10 93539935 to 93539948 13 - TSS region transcription start site region 98970
Tssr98971 10 93539971 to 93540014 43 - TSS region transcription start site region 98971
Tssr98972 10 93540016 to 93540027 11 - TSS region transcription start site region 98972
Cpgi2113 10 93540416 to 93540758 342 CpG island CpG island 2113
Tssr95269 10 93540605 to 93540614 9 + TSS region transcription start site region 95269
Tssr95270 10 93540626 to 93540653 27 + TSS region transcription start site region 95270
Ccdc38 10 93540632 to 93584327 43695 + protein coding gene coiled-coil domain containing 38
Tssr95271 10 93551829 to 93551830 1 + TSS region transcription start site region 95271
Tssr95272 10 93554862 to 93554866 4 + TSS region transcription start site region 95272
Tssr95273 10 93554878 to 93554886 8 + TSS region transcription start site region 95273
Tssr95274 10 93578571 to 93578586 15 + TSS region transcription start site region 95274
Snrpf 10 93583029 to 93589658 6629 - protein coding gene small nuclear ribonucleoprotein polypeptide F
Cpgi2114 10 93589071 to 93589911 840 CpG island CpG island 2114
4933408J17Rik 10 93589413 to 93605245 15832 + lincRNA gene RIKEN cDNA 4933408J17 gene
Tssr98973 10 93589621 to 93589681 60 - TSS region transcription start site region 98973
Tssr3326 10 93589691 to 93589705 14 - TSS region transcription start site region 3326
Tssr98974 10 93594103 to 93594140 37 - TSS region transcription start site region 98974
Cpgi2115 10 93594138 to 93594565 427 CpG island CpG island 2115
Tssr95275 10 93595960 to 93596003 43 + TSS region transcription start site region 95275
Gm47156 10 93618862 to 93634323 15461 + lincRNA gene predicted gene, 47156
Cpgi2116 10 93640578 to 93642241 1663 CpG island CpG island 2116
Tssr95276 10 93640977 to 93641002 25 + TSS region transcription start site region 95276
Tssr95277 10 93641005 to 93641034 29 + TSS region transcription start site region 95277
Tssr95278 10 93641041 to 93641056 15 + TSS region transcription start site region 95278
Ntn4 10 93641049 to 93745972 104923 + protein coding gene netrin 4
Tssr95279 10 93641170 to 93641216 46 + TSS region transcription start site region 95279
Gm8580 10 93665383 to 93665846 463 - pseudogene predicted gene 8580
Gm15915 10 93674218 to 93683322 9104 - antisense lncRNA gene predicted gene 15915
Tssr95280 10 93678730 to 93678733 3 + TSS region transcription start site region 95280
Tssr95281 10 93682476 to 93682487 11 + TSS region transcription start site region 95281
Tssr98975 10 93683335 to 93683349 14 - TSS region transcription start site region 98975
Tssr95282 10 93691095 to 93691096 1 + TSS region transcription start site region 95282
Tssr95283 10 93700685 to 93700708 23 + TSS region transcription start site region 95283
Gm15963 10 93726726 to 93728207 1481 - antisense lncRNA gene predicted gene 15963
Tssr95284 10 93778603 to 93778629 26 + TSS region transcription start site region 95284
Gm3571 10 93778660 to 93779719 1059 + pseudogene predicted gene 3571
Gm26239 10 93807298 to 93807404 106 + snRNA gene predicted gene, 26239
Tssr95285 10 93819976 to 93819985 9 + TSS region transcription start site region 95285
Tssr98976 10 93820811 to 93820824 13 - TSS region transcription start site region 98976
Tssr95286 10 93831441 to 93831452 11 + TSS region transcription start site region 95286
Usp44 10 93831555 to 93858088 26533 + protein coding gene ubiquitin specific peptidase 44
Cpgi2117 10 93833404 to 93834521 1117 CpG island CpG island 2117
Tssr95287 10 93833782 to 93833817 35 + TSS region transcription start site region 95287
Tssr95288 10 93833818 to 93833830 12 + TSS region transcription start site region 95288
Tssr95289 10 93833841 to 93833861 20 + TSS region transcription start site region 95289
Tssr95290 10 93833909 to 93833953 44 + TSS region transcription start site region 95290
Tssr98977 10 93844801 to 93844851 50 - TSS region transcription start site region 98977
Cpgi2118 10 93845865 to 93846670 805 CpG island CpG island 2118
Metap2 10 93858489 to 93897090 38601 - protein coding gene methionine aminopeptidase 2
Tssr98978 10 93875071 to 93875077 6 - TSS region transcription start site region 98978
Cpgi2119 10 93888800 to 93890231 1431 CpG island CpG island 2119
Tssr98979 10 93889609 to 93889619 10 - TSS region transcription start site region 98979
Tssr98980 10 93889704 to 93889727 23 - TSS region transcription start site region 98980
Tssr98981 10 93889758 to 93889826 68 - TSS region transcription start site region 98981
Tssr98982 10 93889969 to 93889987 18 - TSS region transcription start site region 98982
Tssr98983 10 93891117 to 93891136 19 - TSS region transcription start site region 98983
Tssr98984 10 93891141 to 93891194 53 - TSS region transcription start site region 98984
Tssr95291 10 93897156 to 93897161 5 + TSS region transcription start site region 95291
4930471D02Rik 10 93897158 to 93901956 4798 + lincRNA gene RIKEN cDNA 4930471D02 gene
Tssr95292 10 93897164 to 93897175 11 + TSS region transcription start site region 95292
Cpgi2120 10 93907837 to 93908117 280 CpG island CpG island 2120
Gm25962 10 93916169 to 93916336 167 - snoRNA gene predicted gene, 25962
Gm48126 10 93919090 to 93936270 17180 + pseudogene predicted gene, 48126
Vezt 10 93961522 to 94035799 74277 - protein coding gene vezatin, adherens junctions transmembrane protein
Mir331 10 93963768 to 93963863 95 - miRNA gene microRNA 331