Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:93038426-93478429

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfap54 10 92775619 to 93081618 305999 - protein coding gene cilia and flagella associated protein 54
Tssr98945 10 93042017 to 93042048 31 - TSS region transcription start site region 98945
Gm40739 10 93074808 to 93076930 2122 + lncRNA gene predicted gene, 40739
Cpgi2106 10 93081210 to 93081839 629 CpG island CpG island 2106
Tssr98946 10 93081504 to 93081524 20 - TSS region transcription start site region 98946
Tssr98947 10 93081597 to 93081644 47 - TSS region transcription start site region 98947
Tssr98948 10 93083366 to 93083371 5 - TSS region transcription start site region 98948
Tssr95239 10 93084203 to 93084238 35 + TSS region transcription start site region 95239
Gm32468 10 93084204 to 93093395 9191 + lincRNA gene predicted gene, 32468
Tssr95240 10 93123002 to 93123017 15 + TSS region transcription start site region 95240
Tssr3318 10 93124059 to 93124084 25 - TSS region transcription start site region 3318
Tssr3319 10 93124205 to 93124253 48 + TSS region transcription start site region 3319
Tssr3320 10 93124286 to 93124299 13 - TSS region transcription start site region 3320
Tssr98949 10 93124389 to 93124411 22 - TSS region transcription start site region 98949
Tssr98950 10 93124412 to 93124455 43 - TSS region transcription start site region 98950
Tssr95241 10 93124560 to 93124570 10 + TSS region transcription start site region 95241
Tssr95242 10 93124571 to 93124580 9 + TSS region transcription start site region 95242
Gm40740 10 93126416 to 93128315 1899 + lncRNA gene predicted gene, 40740
Gm40741 10 93143207 to 93145472 2265 + lncRNA gene predicted gene, 40741
Tssr95243 10 93143837 to 93143851 14 + TSS region transcription start site region 95243
Tssr95244 10 93145342 to 93145353 11 + TSS region transcription start site region 95244
Cpgi2107 10 93160305 to 93161988 1683 CpG island CpG island 2107
Tssr98951 10 93160520 to 93160533 13 - TSS region transcription start site region 98951
Tssr95245 10 93160645 to 93160685 40 + TSS region transcription start site region 95245
Tssr95246 10 93160687 to 93160714 27 + TSS region transcription start site region 95246
Tssr95247 10 93160787 to 93160815 28 + TSS region transcription start site region 95247
Tssr95248 10 93160824 to 93160894 70 + TSS region transcription start site region 95248
Cdk17 10 93160876 to 93250688 89812 + protein coding gene cyclin-dependent kinase 17
Tssr95249 10 93160978 to 93160989 11 + TSS region transcription start site region 95249
Tssr95250 10 93161091 to 93161147 56 + TSS region transcription start site region 95250
Tssr98952 10 93161733 to 93161738 5 - TSS region transcription start site region 98952
Tssr95251 10 93162112 to 93162127 15 + TSS region transcription start site region 95251
Mir1931 10 93162785 to 93162903 118 + miRNA gene microRNA 1931
Tssr98953 10 93165939 to 93165974 35 - TSS region transcription start site region 98953
Tssr98954 10 93177960 to 93177963 3 - TSS region transcription start site region 98954
Tssr95252 10 93184222 to 93184225 3 + TSS region transcription start site region 95252
Tssr95253 10 93188179 to 93188214 35 + TSS region transcription start site region 95253
Tssr95254 10 93210081 to 93210085 4 + TSS region transcription start site region 95254
Tssr98955 10 93247272 to 93247295 23 - TSS region transcription start site region 98955
Elk3 10 93247414 to 93311135 63721 - protein coding gene ELK3, member of ETS oncogene family
Tssr98956 10 93258426 to 93258429 3 - TSS region transcription start site region 98956
Tssr3321 10 93261492 to 93261504 12 + TSS region transcription start site region 3321
Tssr98957 10 93265124 to 93265189 65 - TSS region transcription start site region 98957
Tssr98958 10 93265834 to 93265876 42 - TSS region transcription start site region 98958
D10Mit43 10 93272950 to 93273087 137 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 43
Tssr98959 10 93276534 to 93276546 12 - TSS region transcription start site region 98959
Tssr98960 10 93276558 to 93276573 15 - TSS region transcription start site region 98960
Gm32551 10 93284984 to 93289465 4481 + lncRNA gene predicted gene, 32551
Tssr98961 10 93297833 to 93297839 6 - TSS region transcription start site region 98961
Tssr98962 10 93306110 to 93306112 2 - TSS region transcription start site region 98962
Tssr3322 10 93309082 to 93309102 20 - TSS region transcription start site region 3322
Tssr95255 10 93309710 to 93309724 14 + TSS region transcription start site region 95255
Tssr95256 10 93309885 to 93309891 6 + TSS region transcription start site region 95256
Tssr3323 10 93309904 to 93309924 20 + TSS region transcription start site region 3323
Tssr95257 10 93310023 to 93310064 41 + TSS region transcription start site region 95257
Cpgi2108 10 93310083 to 93311493 1410 CpG island CpG island 2108
Tssr98963 10 93310846 to 93310878 32 - TSS region transcription start site region 98963
Tssr98964 10 93310963 to 93310989 26 - TSS region transcription start site region 98964
Tssr98965 10 93310991 to 93311016 25 - TSS region transcription start site region 98965
Tssr98966 10 93311073 to 93311161 88 - TSS region transcription start site region 98966
Tssr98967 10 93311163 to 93311194 31 - TSS region transcription start site region 98967
Gm32688 10 93317403 to 93322725 5322 + lincRNA gene predicted gene, 32688
Tssr95258 10 93336220 to 93336239 19 + TSS region transcription start site region 95258
Gm17745 10 93336232 to 93348879 12647 + lincRNA gene predicted gene, 17745
Tssr98968 10 93380116 to 93380134 18 - TSS region transcription start site region 98968
Gm47344 10 93397090 to 93397273 183 - pseudogene predicted gene, 47344
Gm40742 10 93430285 to 93431959 1674 - lncRNA gene predicted gene, 40742
Cpgi2109 10 93430855 to 93431188 333 CpG island CpG island 2109
Mir7688 10 93433107 to 93433162 55 + miRNA gene microRNA 7688
Tssr3324 10 93437122 to 93437138 16 + TSS region transcription start site region 3324
n-TDgtc8 10 93452978 to 93453049 71 - tRNA gene nuclear encoded tRNA aspartic acid 8 (anticodon GTC)
Cpgi2110 10 93453054 to 93454039 985 CpG island CpG island 2110
Tssr95259 10 93453382 to 93453397 15 + TSS region transcription start site region 95259
Tssr95260 10 93453402 to 93453470 68 + TSS region transcription start site region 95260
Lta4h 10 93453411 to 93484875 31464 + protein coding gene leukotriene A4 hydrolase
Tssr95261 10 93453472 to 93453483 11 + TSS region transcription start site region 95261
Tssr95262 10 93468136 to 93468158 22 + TSS region transcription start site region 95262