Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:92006083-93406257

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmb4 10 67012408 to 92422811 25410403 QTL lupus in MRL and B6 F2 cross, QTL 4
Pwgrq19 10 82992866 to 92333194 9340328 QTL post-weaning growth rate QTL 19
D10Mit176 10 92069427 to 92069548 121 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 176
Gm27544 10 92071661 to 92071815 154 - unclassified non-coding RNA gene predicted gene, 27544
Mir135a-2 10 92072086 to 92072185 99 - miRNA gene microRNA 135a-2
Tssr98922 10 92072098 to 92072104 6 - TSS region transcription start site region 98922
Tssr98923 10 92073390 to 92073418 28 - TSS region transcription start site region 98923
Gm27999 10 92075169 to 92075361 192 - unclassified non-coding RNA gene predicted gene, 27999
Gm27608 10 92075491 to 92075652 161 - unclassified non-coding RNA gene predicted gene, 27608
Tssr98924 10 92078061 to 92078066 5 - TSS region transcription start site region 98924
Rmst 10 92081746 to 92165178 83432 - lincRNA gene rhabdomyosarcoma 2 associated transcript (non-coding RNA)
Tssr98925 10 92089186 to 92089231 45 - TSS region transcription start site region 98925
Gm27588 10 92101665 to 92101927 262 - unclassified non-coding RNA gene predicted gene, 27588
Gm27753 10 92103707 to 92103909 202 - unclassified non-coding RNA gene predicted gene, 27753
Tssr98926 10 92116498 to 92116503 5 - TSS region transcription start site region 98926
Tssr98927 10 92124208 to 92124219 11 - TSS region transcription start site region 98927
Gm27582 10 92133222 to 92133347 125 - unclassified non-coding RNA gene predicted gene, 27582
Gm27366 10 92134963 to 92135070 107 - unclassified non-coding RNA gene predicted gene, 27366
Gm27419 10 92135700 to 92135808 108 - unclassified non-coding RNA gene predicted gene, 27419
Mir1251 10 92137140 to 92137223 83 - miRNA gene microRNA 1251
Gm26700 10 92162103 to 92164690 2587 + lincRNA gene predicted gene, 26700
Cpgi2104 10 92162461 to 92162926 465 CpG island CpG island 2104
Tssr98928 10 92162693 to 92162708 15 - TSS region transcription start site region 98928
Tssr98929 10 92162727 to 92162740 13 - TSS region transcription start site region 98929
Tssr98930 10 92162753 to 92162765 12 - TSS region transcription start site region 98930
Tssr98931 10 92163031 to 92163040 9 - TSS region transcription start site region 98931
Tssr98932 10 92164670 to 92164679 9 - TSS region transcription start site region 98932
Tssr98933 10 92164744 to 92164754 10 - TSS region transcription start site region 98933
Tssr98934 10 92164774 to 92164791 17 - TSS region transcription start site region 98934
Tssr98935 10 92165131 to 92165156 25 - TSS region transcription start site region 98935
Tssr98936 10 92165159 to 92165177 18 - TSS region transcription start site region 98936
Tssr98937 10 92165193 to 92165209 16 - TSS region transcription start site region 98937
Tssr98938 10 92165213 to 92165239 26 - TSS region transcription start site region 98938
Gm20757 10 92171301 to 92375373 204072 - lincRNA gene predicted gene, 20757
Tssr95236 10 92203011 to 92203017 6 + TSS region transcription start site region 95236
Gm8512 10 92223004 to 92223474 470 - pseudogene predicted gene 8512
Tssr98939 10 92247079 to 92247080 1 - TSS region transcription start site region 98939
Gm47124 10 92258590 to 92259280 690 + pseudogene predicted gene, 47124
Tssr98940 10 92290591 to 92290603 12 - TSS region transcription start site region 98940
D10Mit10 10 92291521 to 92291700 179 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 10
D10Mit265 10 92323567 to 92323689 122 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 265
Tssr98941 10 92375367 to 92375386 19 - TSS region transcription start site region 98941
Gm40738 10 92389658 to 92471193 81535 - lncRNA gene predicted gene, 40738
4930401A07Rik 10 92401014 to 92417495 16481 + lincRNA gene RIKEN cDNA 4930401A07 gene
D10Mit11 10 92422615 to 92422811 196 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 11
Gm18043 10 92484220 to 92484958 738 + pseudogene predicted gene, 18043
Gm25884 10 92486818 to 92486879 61 + snRNA gene predicted gene, 25884
Fembrs3 10 92502706 to 92502905 199 QTL femur breaking strength 3
Femwf3 10 92502706 to 92502905 199 QTL femur work to failure 3
D10Mit95 10 92502706 to 92502905 199 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 95
Vtbt9 10 92502706 to 92502905 199 QTL vertebral trabecular bone trait 9
Gm4800 10 92542405 to 92543670 1265 - pseudogene predicted gene 4800
Gm3523 10 92587061 to 92587340 279 + pseudogene predicted gene 3523
Gm22582 10 92587214 to 92587307 93 + miRNA gene predicted gene, 22582
Gm31822 10 92644091 to 92651734 7643 + lincRNA gene predicted gene, 31822
Tssr95237 10 92680376 to 92680382 6 + TSS region transcription start site region 95237
Nedd1 10 92684746 to 92722420 37674 - protein coding gene neural precursor cell expressed, developmentally down-regulated gene 1
Gm24241 10 92688864 to 92689008 144 - snoRNA gene predicted gene, 24241
Gm47993 10 92706083 to 92706257 174 - pseudogene predicted gene, 47993
Gm49783 10 92717508 to 92723688 6180 - unclassified gene predicted gene, 49783
Cpgi2105 10 92721768 to 92722651 883 CpG island CpG island 2105
Tssr98942 10 92722356 to 92722409 53 - TSS region transcription start site region 98942
Cfap54 10 92775619 to 93081618 305999 - protein coding gene cilia and flagella associated protein 54
Tssr95238 10 92825722 to 92825725 3 + TSS region transcription start site region 95238
D10Mit68 10 92894079 to 92894187 108 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 68
Tssr98943 10 92938007 to 92938018 11 - TSS region transcription start site region 98943
Tssr98944 10 93025157 to 93025166 9 - TSS region transcription start site region 98944
Tssr98945 10 93042017 to 93042048 31 - TSS region transcription start site region 98945
Gm40739 10 93074808 to 93076930 2122 + lncRNA gene predicted gene, 40739
Cpgi2106 10 93081210 to 93081839 629 CpG island CpG island 2106
Tssr98946 10 93081504 to 93081524 20 - TSS region transcription start site region 98946
Tssr98947 10 93081597 to 93081644 47 - TSS region transcription start site region 98947
Tssr98948 10 93083366 to 93083371 5 - TSS region transcription start site region 98948
Tssr95239 10 93084203 to 93084238 35 + TSS region transcription start site region 95239
Gm32468 10 93084204 to 93093395 9191 + lincRNA gene predicted gene, 32468
Tssr95240 10 93123002 to 93123017 15 + TSS region transcription start site region 95240
Tssr3318 10 93124059 to 93124084 25 - TSS region transcription start site region 3318
Tssr3319 10 93124205 to 93124253 48 + TSS region transcription start site region 3319
Tssr3320 10 93124286 to 93124299 13 - TSS region transcription start site region 3320
Tssr98949 10 93124389 to 93124411 22 - TSS region transcription start site region 98949
Tssr98950 10 93124412 to 93124455 43 - TSS region transcription start site region 98950
Tssr95241 10 93124560 to 93124570 10 + TSS region transcription start site region 95241
Tssr95242 10 93124571 to 93124580 9 + TSS region transcription start site region 95242
Gm40740 10 93126416 to 93128315 1899 + lncRNA gene predicted gene, 40740
Gm40741 10 93143207 to 93145472 2265 + lncRNA gene predicted gene, 40741
Tssr95243 10 93143837 to 93143851 14 + TSS region transcription start site region 95243
Tssr95244 10 93145342 to 93145353 11 + TSS region transcription start site region 95244
Cpgi2107 10 93160305 to 93161988 1683 CpG island CpG island 2107
Tssr98951 10 93160520 to 93160533 13 - TSS region transcription start site region 98951
Tssr95245 10 93160645 to 93160685 40 + TSS region transcription start site region 95245
Tssr95246 10 93160687 to 93160714 27 + TSS region transcription start site region 95246
Tssr95247 10 93160787 to 93160815 28 + TSS region transcription start site region 95247
Tssr95248 10 93160824 to 93160894 70 + TSS region transcription start site region 95248
Cdk17 10 93160876 to 93250688 89812 + protein coding gene cyclin-dependent kinase 17
Tssr95249 10 93160978 to 93160989 11 + TSS region transcription start site region 95249
Tssr95250 10 93161091 to 93161147 56 + TSS region transcription start site region 95250
Tssr98952 10 93161733 to 93161738 5 - TSS region transcription start site region 98952
Tssr95251 10 93162112 to 93162127 15 + TSS region transcription start site region 95251
Mir1931 10 93162785 to 93162903 118 + miRNA gene microRNA 1931
Tssr98953 10 93165939 to 93165974 35 - TSS region transcription start site region 98953
Tssr98954 10 93177960 to 93177963 3 - TSS region transcription start site region 98954
Tssr95252 10 93184222 to 93184225 3 + TSS region transcription start site region 95252
Tssr95253 10 93188179 to 93188214 35 + TSS region transcription start site region 95253
Tssr95254 10 93210081 to 93210085 4 + TSS region transcription start site region 95254
Tssr98955 10 93247272 to 93247295 23 - TSS region transcription start site region 98955
Elk3 10 93247414 to 93311135 63721 - protein coding gene ELK3, member of ETS oncogene family
Tssr98956 10 93258426 to 93258429 3 - TSS region transcription start site region 98956
Tssr3321 10 93261492 to 93261504 12 + TSS region transcription start site region 3321
Tssr98957 10 93265124 to 93265189 65 - TSS region transcription start site region 98957
Tssr98958 10 93265834 to 93265876 42 - TSS region transcription start site region 98958
D10Mit43 10 93272950 to 93273087 137 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 43
Tssr98959 10 93276534 to 93276546 12 - TSS region transcription start site region 98959
Tssr98960 10 93276558 to 93276573 15 - TSS region transcription start site region 98960
Gm32551 10 93284984 to 93289465 4481 + lncRNA gene predicted gene, 32551
Tssr98961 10 93297833 to 93297839 6 - TSS region transcription start site region 98961
Tssr98962 10 93306110 to 93306112 2 - TSS region transcription start site region 98962
Tssr3322 10 93309082 to 93309102 20 - TSS region transcription start site region 3322
Tssr95255 10 93309710 to 93309724 14 + TSS region transcription start site region 95255
Tssr95256 10 93309885 to 93309891 6 + TSS region transcription start site region 95256
Tssr3323 10 93309904 to 93309924 20 + TSS region transcription start site region 3323
Tssr95257 10 93310023 to 93310064 41 + TSS region transcription start site region 95257
Cpgi2108 10 93310083 to 93311493 1410 CpG island CpG island 2108
Tssr98963 10 93310846 to 93310878 32 - TSS region transcription start site region 98963
Tssr98964 10 93310963 to 93310989 26 - TSS region transcription start site region 98964
Tssr98965 10 93310991 to 93311016 25 - TSS region transcription start site region 98965
Tssr98966 10 93311073 to 93311161 88 - TSS region transcription start site region 98966
Tssr98967 10 93311163 to 93311194 31 - TSS region transcription start site region 98967
Gm32688 10 93317403 to 93322725 5322 + lincRNA gene predicted gene, 32688
Tssr95258 10 93336220 to 93336239 19 + TSS region transcription start site region 95258
Gm17745 10 93336232 to 93348879 12647 + lincRNA gene predicted gene, 17745
Tssr98968 10 93380116 to 93380134 18 - TSS region transcription start site region 98968
Gm47344 10 93397090 to 93397273 183 - pseudogene predicted gene, 47344
Ednrbm1 10 103877895 to 92291521 -11586374 QTL endothelin receptor type B modifier 1
Ogrq4 10 107484128 to 92333194 -15150934 QTL overall growth rate QTL 4
Tmevp2 10 111732414 to 92894079 -18838335 QTL Theiler's murine encephalomyelitis virus persistence 2