Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:91101732-92212005

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ikbip 10 91082940 to 91102607 19667 + protein coding gene IKBKB interacting protein
Cpgi2100 10 91102047 to 91102219 172 CpG island CpG island 2100
A930036M01Rik 10 91113784 to 91114246 462 unclassified non-coding RNA gene RIKEN cDNA A930036M01 gene
Slc25a3 10 91116578 to 91124001 7423 - protein coding gene solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
Tssr95228 10 91116787 to 91116809 22 + TSS region transcription start site region 95228
Tssr98905 10 91118197 to 91118211 14 - TSS region transcription start site region 98905
Gm24119 10 91118291 to 91118536 245 - snoRNA gene predicted gene, 24119
Tssr98906 10 91121946 to 91121994 48 - TSS region transcription start site region 98906
Tssr98907 10 91122856 to 91122872 16 - TSS region transcription start site region 98907
Cpgi2101 10 91123239 to 91124297 1058 CpG island CpG island 2101
Tssr98908 10 91123262 to 91123315 53 - TSS region transcription start site region 98908
Tssr95229 10 91123397 to 91123414 17 + TSS region transcription start site region 95229
Tssr95230 10 91123419 to 91123433 14 + TSS region transcription start site region 95230
Tssr98909 10 91123955 to 91124044 89 - TSS region transcription start site region 98909
D10Mit302 10 91125780 to 91125898 118 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 302
Tssr98910 10 91138416 to 91138442 26 - TSS region transcription start site region 98910
Tmpo 10 91147571 to 91181315 33744 - protein coding gene thymopoietin
Gm26765 10 91149515 to 91150594 1079 + lincRNA gene predicted gene, 26765
5830485P09Rik 10 91150081 to 91151638 1557 unclassified gene RIKEN cDNA 5830485P09 gene
Tssr98911 10 91153849 to 91153856 7 - TSS region transcription start site region 98911
Tssr95231 10 91165991 to 91166016 25 + TSS region transcription start site region 95231
Tssr98912 10 91170448 to 91170487 39 - TSS region transcription start site region 98912
Cpgi2102 10 91170475 to 91172105 1630 CpG island CpG island 2102
Tssr98913 10 91170500 to 91170528 28 - TSS region transcription start site region 98913
Tssr98914 10 91170588 to 91170598 10 - TSS region transcription start site region 98914
Tssr98915 10 91170641 to 91170645 4 - TSS region transcription start site region 98915
Tssr95232 10 91170718 to 91170730 12 + TSS region transcription start site region 95232
Tssr95233 10 91170773 to 91170787 14 + TSS region transcription start site region 95233
Tssr95234 10 91170819 to 91170864 45 + TSS region transcription start site region 95234
Tssr98916 10 91171512 to 91171523 11 - TSS region transcription start site region 98916
Tssr98917 10 91171525 to 91171610 85 - TSS region transcription start site region 98917
Tssr98918 10 91171702 to 91171715 13 - TSS region transcription start site region 98918
Tssr95235 10 91171758 to 91171770 12 + TSS region transcription start site region 95235
Cpgi2103 10 91181291 to 91182095 804 CpG island CpG island 2103
n-TWcca2 10 91181412 to 91181483 71 - tRNA gene nuclear encoded tRNA trytophan 2 (anticodon CCA)
Tssr98919 10 91181435 to 91181450 15 - TSS region transcription start site region 98919
Tssr98920 10 91181658 to 91181715 57 - TSS region transcription start site region 98920
n-TDgtc16 10 91182097 to 91182168 71 - tRNA gene nuclear encoded tRNA aspartic acid 16 (anticodon GTC)
Tssr98921 10 91189069 to 91189082 13 - TSS region transcription start site region 98921
4930534H03Rik 10 91208619 to 91217312 8693 - lincRNA gene RIKEN cDNA 4930534H03 gene
Gm47081 10 91228186 to 91228497 311 + pseudogene predicted gene, 47081
Gm18705 10 91258471 to 91259503 1032 - pseudogene predicted gene, 18705
D10Mit1010 10 91276803 to 91276946 143 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1010
Gm47082 10 91310345 to 91312450 2105 + lincRNA gene predicted gene, 47082
Gm40736 10 91410595 to 91439619 29024 + lncRNA gene predicted gene, 40736
Gm47083 10 91423354 to 91423735 381 + pseudogene predicted gene, 47083
Gm47084 10 91448221 to 91448380 159 - pseudogene predicted gene, 47084
Gm47091 10 91640702 to 91640890 188 - pseudogene predicted gene, 47091
D10Mit272 10 91656732 to 91657005 273 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 272
Gm31592 10 91888829 to 91953580 64751 + lincRNA gene predicted gene, 31592
Gm31673 10 91983863 to 91987425 3562 + lncRNA gene predicted gene, 31673
D10Mit176 10 92069427 to 92069548 121 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 176
Gm27544 10 92071661 to 92071815 154 - unclassified non-coding RNA gene predicted gene, 27544
Mir135a-2 10 92072086 to 92072185 99 - miRNA gene microRNA 135a-2
Tssr98922 10 92072098 to 92072104 6 - TSS region transcription start site region 98922
Tssr98923 10 92073390 to 92073418 28 - TSS region transcription start site region 98923
Gm27999 10 92075169 to 92075361 192 - unclassified non-coding RNA gene predicted gene, 27999
Gm27608 10 92075491 to 92075652 161 - unclassified non-coding RNA gene predicted gene, 27608
Tssr98924 10 92078061 to 92078066 5 - TSS region transcription start site region 98924
Rmst 10 92081746 to 92165178 83432 - lincRNA gene rhabdomyosarcoma 2 associated transcript (non-coding RNA)
Tssr98925 10 92089186 to 92089231 45 - TSS region transcription start site region 98925
Gm27588 10 92101665 to 92101927 262 - unclassified non-coding RNA gene predicted gene, 27588
Gm27753 10 92103707 to 92103909 202 - unclassified non-coding RNA gene predicted gene, 27753
Tssr98926 10 92116498 to 92116503 5 - TSS region transcription start site region 98926
Tssr98927 10 92124208 to 92124219 11 - TSS region transcription start site region 98927
Gm27582 10 92133222 to 92133347 125 - unclassified non-coding RNA gene predicted gene, 27582
Gm27366 10 92134963 to 92135070 107 - unclassified non-coding RNA gene predicted gene, 27366
Gm27419 10 92135700 to 92135808 108 - unclassified non-coding RNA gene predicted gene, 27419
Mir1251 10 92137140 to 92137223 83 - miRNA gene microRNA 1251
Gm26700 10 92162103 to 92164690 2587 + lincRNA gene predicted gene, 26700
Cpgi2104 10 92162461 to 92162926 465 CpG island CpG island 2104
Tssr98928 10 92162693 to 92162708 15 - TSS region transcription start site region 98928
Tssr98929 10 92162727 to 92162740 13 - TSS region transcription start site region 98929
Tssr98930 10 92162753 to 92162765 12 - TSS region transcription start site region 98930
Tssr98931 10 92163031 to 92163040 9 - TSS region transcription start site region 98931
Tssr98932 10 92164670 to 92164679 9 - TSS region transcription start site region 98932
Tssr98933 10 92164744 to 92164754 10 - TSS region transcription start site region 98933
Tssr98934 10 92164774 to 92164791 17 - TSS region transcription start site region 98934
Tssr98935 10 92165131 to 92165156 25 - TSS region transcription start site region 98935
Tssr98936 10 92165159 to 92165177 18 - TSS region transcription start site region 98936
Tssr98937 10 92165193 to 92165209 16 - TSS region transcription start site region 98937
Tssr98938 10 92165213 to 92165239 26 - TSS region transcription start site region 98938
Gm20757 10 92171301 to 92375373 204072 - lincRNA gene predicted gene, 20757
Tssr95236 10 92203011 to 92203017 6 + TSS region transcription start site region 95236