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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:90921291-91442095

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssrq4 10 82655104 to 91020240 8365136 QTL stress response QTL 4
Anks1b 10 89873509 to 90973300 1099791 + protein coding gene ankyrin repeat and sterile alpha motif domain containing 1B
Tssr95219 10 90934776 to 90934780 4 + TSS region transcription start site region 95219
Tssr95220 10 90936739 to 90936751 12 + TSS region transcription start site region 95220
Cpgi2098 10 90969235 to 90970256 1021 CpG island CpG island 2098
Tssr95221 10 90970239 to 90970279 40 + TSS region transcription start site region 95221
Apaf1 10 90989311 to 91082743 93432 - protein coding gene apoptotic peptidase activating factor 1
Tssr98897 10 91001371 to 91001381 10 - TSS region transcription start site region 98897
Gm25390 10 91005741 to 91005843 102 + snRNA gene predicted gene, 25390
Tssr98898 10 91007317 to 91007325 8 - TSS region transcription start site region 98898
D10Mit231 10 91020120 to 91020240 120 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 231
Tssr3317 10 91040049 to 91040052 3 + TSS region transcription start site region 3317
Tssr98899 10 91045932 to 91045936 4 - TSS region transcription start site region 98899
Tssr95222 10 91082091 to 91082103 12 + TSS region transcription start site region 95222
Cpgi2099 10 91082183 to 91083536 1353 CpG island CpG island 2099
Tssr98900 10 91082556 to 91082577 21 - TSS region transcription start site region 98900
Tssr98901 10 91082653 to 91082661 8 - TSS region transcription start site region 98901
Tssr98902 10 91082683 to 91082700 17 - TSS region transcription start site region 98902
Tssr98903 10 91082704 to 91082773 69 - TSS region transcription start site region 98903
Tssr98904 10 91082783 to 91082807 24 - TSS region transcription start site region 98904
Ikbip 10 91082940 to 91102607 19667 + protein coding gene IKBKB interacting protein
Tssr95223 10 91083024 to 91083028 4 + TSS region transcription start site region 95223
Tssr95224 10 91083036 to 91083075 39 + TSS region transcription start site region 95224
Tssr95225 10 91083081 to 91083103 22 + TSS region transcription start site region 95225
Tssr95226 10 91096694 to 91096697 3 + TSS region transcription start site region 95226
Tssr95227 10 91097129 to 91097140 11 + TSS region transcription start site region 95227
Cpgi2100 10 91102047 to 91102219 172 CpG island CpG island 2100
A930036M01Rik 10 91113784 to 91114246 462 unclassified non-coding RNA gene RIKEN cDNA A930036M01 gene
Slc25a3 10 91116578 to 91124001 7423 - protein coding gene solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
Tssr95228 10 91116787 to 91116809 22 + TSS region transcription start site region 95228
Tssr98905 10 91118197 to 91118211 14 - TSS region transcription start site region 98905
Gm24119 10 91118291 to 91118536 245 - snoRNA gene predicted gene, 24119
Tssr98906 10 91121946 to 91121994 48 - TSS region transcription start site region 98906
Tssr98907 10 91122856 to 91122872 16 - TSS region transcription start site region 98907
Cpgi2101 10 91123239 to 91124297 1058 CpG island CpG island 2101
Tssr98908 10 91123262 to 91123315 53 - TSS region transcription start site region 98908
Tssr95229 10 91123397 to 91123414 17 + TSS region transcription start site region 95229
Tssr95230 10 91123419 to 91123433 14 + TSS region transcription start site region 95230
Tssr98909 10 91123955 to 91124044 89 - TSS region transcription start site region 98909
D10Mit302 10 91125780 to 91125898 118 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 302
Tssr98910 10 91138416 to 91138442 26 - TSS region transcription start site region 98910
Tmpo 10 91147571 to 91181315 33744 - protein coding gene thymopoietin
Gm26765 10 91149515 to 91150594 1079 + lincRNA gene predicted gene, 26765
5830485P09Rik 10 91150081 to 91151638 1557 unclassified gene RIKEN cDNA 5830485P09 gene
Tssr98911 10 91153849 to 91153856 7 - TSS region transcription start site region 98911
Tssr95231 10 91165991 to 91166016 25 + TSS region transcription start site region 95231
Tssr98912 10 91170448 to 91170487 39 - TSS region transcription start site region 98912
Cpgi2102 10 91170475 to 91172105 1630 CpG island CpG island 2102
Tssr98913 10 91170500 to 91170528 28 - TSS region transcription start site region 98913
Tssr98914 10 91170588 to 91170598 10 - TSS region transcription start site region 98914
Tssr98915 10 91170641 to 91170645 4 - TSS region transcription start site region 98915
Tssr95232 10 91170718 to 91170730 12 + TSS region transcription start site region 95232
Tssr95233 10 91170773 to 91170787 14 + TSS region transcription start site region 95233
Tssr95234 10 91170819 to 91170864 45 + TSS region transcription start site region 95234
Tssr98916 10 91171512 to 91171523 11 - TSS region transcription start site region 98916
Tssr98917 10 91171525 to 91171610 85 - TSS region transcription start site region 98917
Tssr98918 10 91171702 to 91171715 13 - TSS region transcription start site region 98918
Tssr95235 10 91171758 to 91171770 12 + TSS region transcription start site region 95235
Cpgi2103 10 91181291 to 91182095 804 CpG island CpG island 2103
n-TWcca2 10 91181412 to 91181483 71 - tRNA gene nuclear encoded tRNA trytophan 2 (anticodon CCA)
Tssr98919 10 91181435 to 91181450 15 - TSS region transcription start site region 98919
Tssr98920 10 91181658 to 91181715 57 - TSS region transcription start site region 98920
n-TDgtc16 10 91182097 to 91182168 71 - tRNA gene nuclear encoded tRNA aspartic acid 16 (anticodon GTC)
Tssr98921 10 91189069 to 91189082 13 - TSS region transcription start site region 98921
4930534H03Rik 10 91208619 to 91217312 8693 - lincRNA gene RIKEN cDNA 4930534H03 gene
Gm47081 10 91228186 to 91228497 311 + pseudogene predicted gene, 47081
Gm18705 10 91258471 to 91259503 1032 - pseudogene predicted gene, 18705
D10Mit1010 10 91276803 to 91276946 143 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1010
Gm47082 10 91310345 to 91312450 2105 + lincRNA gene predicted gene, 47082
Gm40736 10 91410595 to 91439619 29024 + lncRNA gene predicted gene, 40736
Gm47083 10 91423354 to 91423735 381 + pseudogene predicted gene, 47083
Lgth11 10 121000000 to 91000000 -30000000 QTL body length 11