Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:89753509-91093300

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssrq4 10 82655104 to 91020240 8365136 QTL stress response QTL 4
Uhrf1bp1l 10 89744991 to 89819871 74880 + protein coding gene UHRF1 (ICBP90) binding protein 1-like
Tssr95181 10 89781169 to 89781185 16 + TSS region transcription start site region 95181
Tssr95182 10 89785837 to 89785841 4 + TSS region transcription start site region 95182
Gm31090 10 89812159 to 89813893 1734 + lncRNA gene predicted gene, 31090
Gm26180 10 89821340 to 89821446 106 - snRNA gene predicted gene, 26180
Gm46238 10 89822878 to 89826535 3657 + protein coding gene predicted gene, 46238
Cpgi2094 10 89872550 to 89873886 1336 CpG island CpG island 2094
Tssr3313 10 89872922 to 89872943 21 + TSS region transcription start site region 3313
Tssr95183 10 89872959 to 89872973 14 + TSS region transcription start site region 95183
Tssr95184 10 89872977 to 89872998 21 + TSS region transcription start site region 95184
Tssr95185 10 89873008 to 89873058 50 + TSS region transcription start site region 95185
Tssr95186 10 89873241 to 89873252 11 + TSS region transcription start site region 95186
Tssr95187 10 89873482 to 89873492 10 + TSS region transcription start site region 95187
Tssr95188 10 89873497 to 89873516 19 + TSS region transcription start site region 95188
Anks1b 10 89873509 to 90973300 1099791 + protein coding gene ankyrin repeat and sterile alpha motif domain containing 1B
Gm4184 10 89878269 to 89878601 332 + protein coding gene predicted gene 4184
Tssr95189 10 89916373 to 89916385 12 + TSS region transcription start site region 95189
Cpgi2095 10 90049813 to 90050192 379 CpG island CpG island 2095
Tssr95190 10 90071011 to 90071015 4 + TSS region transcription start site region 95190
Tssr95191 10 90071095 to 90071117 22 + TSS region transcription start site region 95191
Tssr3314 10 90113328 to 90113332 4 + TSS region transcription start site region 3314
Gm5780 10 90132984 to 90134817 1833 - pseudogene predicted gene 5780
Cpgi2096 10 90135111 to 90135431 320 CpG island CpG island 2096
Tssr95192 10 90314752 to 90314756 4 + TSS region transcription start site region 95192
Tssr95193 10 90365198 to 90365238 40 + TSS region transcription start site region 95193
C230047L17Rik 10 90426587 to 90428054 1467 unclassified gene RIKEN cDNA C230047L17 gene
Gm22602 10 90450910 to 90451004 94 + snRNA gene predicted gene, 22602
D10Mit9 10 90467091 to 90467247 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 9
D10Mit313 10 90544911 to 90545032 121 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-313
Tssr95194 10 90576471 to 90576483 12 + TSS region transcription start site region 95194
Tssr95195 10 90576659 to 90576668 9 + TSS region transcription start site region 95195
Tssr95196 10 90576678 to 90576689 11 + TSS region transcription start site region 95196
Tssr95197 10 90576708 to 90576764 56 + TSS region transcription start site region 95197
Tssr95198 10 90576777 to 90576784 7 + TSS region transcription start site region 95198
Tssr95199 10 90576872 to 90576887 15 + TSS region transcription start site region 95199
Tssr3315 10 90577018 to 90577023 5 + TSS region transcription start site region 3315
Tssr98896 10 90587154 to 90587186 32 - TSS region transcription start site region 98896
2900018E21Rik 10 90597632 to 90599160 1528 unclassified gene RIKEN cDNA 2900018E21 gene
Tssr95200 10 90632068 to 90632071 3 + TSS region transcription start site region 95200
Ltpr5a 10 90671039 to 90671185 146 QTL Leishmania tropica response 5a
D10Mit67 10 90671039 to 90671185 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 67
D10Mit161 10 90697913 to 90698047 134 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 161
Gm47591 10 90728960 to 90736330 7370 + sense intronic lncRNA gene predicted gene, 47591
Tssr95201 10 90747670 to 90747672 2 + TSS region transcription start site region 95201
Gm18670 10 90750025 to 90750687 662 - pseudogene predicted gene, 18670
Gm47589 10 90750872 to 90751066 194 - pseudogene predicted gene, 47589
Gm47592 10 90813083 to 90814389 1306 + unclassified gene predicted gene, 47592
Cpgi2097 10 90828480 to 90829952 1472 CpG island CpG island 2097
Tssr95202 10 90828897 to 90828926 29 + TSS region transcription start site region 95202
Tssr95203 10 90828931 to 90828947 16 + TSS region transcription start site region 95203
Tssr95204 10 90829409 to 90829481 72 + TSS region transcription start site region 95204
Tssr95205 10 90829538 to 90829556 18 + TSS region transcription start site region 95205
Tssr95206 10 90829642 to 90829658 16 + TSS region transcription start site region 95206
Tssr95207 10 90829780 to 90829791 11 + TSS region transcription start site region 95207
Tssr95208 10 90829835 to 90829848 13 + TSS region transcription start site region 95208
Tssr95209 10 90829982 to 90829986 4 + TSS region transcription start site region 95209
Tssr95210 10 90834237 to 90834239 2 + TSS region transcription start site region 95210
Tssr95211 10 90837820 to 90837823 3 + TSS region transcription start site region 95211
Gm47590 10 90851099 to 90854074 2975 + unclassified gene predicted gene, 47590
Tssr95212 10 90875137 to 90875148 11 + TSS region transcription start site region 95212
Tssr95213 10 90875639 to 90875643 4 + TSS region transcription start site region 95213
Tssr95214 10 90877321 to 90877325 4 + TSS region transcription start site region 95214
Tssr3316 10 90892626 to 90892634 8 - TSS region transcription start site region 3316
Tssr95215 10 90907702 to 90907705 3 + TSS region transcription start site region 95215
Tssr95216 10 90915733 to 90915739 6 + TSS region transcription start site region 95216
Tssr95217 10 90917751 to 90917756 5 + TSS region transcription start site region 95217
Tssr95218 10 90918161 to 90918166 5 + TSS region transcription start site region 95218
Tssr95219 10 90934776 to 90934780 4 + TSS region transcription start site region 95219
Tssr95220 10 90936739 to 90936751 12 + TSS region transcription start site region 95220
Cpgi2098 10 90969235 to 90970256 1021 CpG island CpG island 2098
Tssr95221 10 90970239 to 90970279 40 + TSS region transcription start site region 95221
Apaf1 10 90989311 to 91082743 93432 - protein coding gene apoptotic peptidase activating factor 1
Tssr98897 10 91001371 to 91001381 10 - TSS region transcription start site region 98897
Gm25390 10 91005741 to 91005843 102 + snRNA gene predicted gene, 25390
Tssr98898 10 91007317 to 91007325 8 - TSS region transcription start site region 98898
D10Mit231 10 91020120 to 91020240 120 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 231
Tssr3317 10 91040049 to 91040052 3 + TSS region transcription start site region 3317
Tssr98899 10 91045932 to 91045936 4 - TSS region transcription start site region 98899
Tssr95222 10 91082091 to 91082103 12 + TSS region transcription start site region 95222
Cpgi2099 10 91082183 to 91083536 1353 CpG island CpG island 2099
Tssr98900 10 91082556 to 91082577 21 - TSS region transcription start site region 98900
Tssr98901 10 91082653 to 91082661 8 - TSS region transcription start site region 98901
Tssr98902 10 91082683 to 91082700 17 - TSS region transcription start site region 98902
Tssr98903 10 91082704 to 91082773 69 - TSS region transcription start site region 98903
Tssr98904 10 91082783 to 91082807 24 - TSS region transcription start site region 98904
Ikbip 10 91082940 to 91102607 19667 + protein coding gene IKBKB interacting protein
Tssr95223 10 91083024 to 91083028 4 + TSS region transcription start site region 95223
Tssr95224 10 91083036 to 91083075 39 + TSS region transcription start site region 95224
Tssr95225 10 91083081 to 91083103 22 + TSS region transcription start site region 95225
Lgth11 10 121000000 to 91000000 -30000000 QTL body length 11
Ltpr5 10 125739363 to 90671039 -35068324 QTL Leishmania tropica response 5