Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:8870033-12080053

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sash1 10 8722219 to 8886070 163851 - protein coding gene SAM and SH3 domain containing 1
Tssr92335 10 8874219 to 8874240 21 + TSS region transcription start site region 92335
Tssr92336 10 8884062 to 8884098 36 + TSS region transcription start site region 92336
Gm26674 10 8884637 to 8886878 2241 + antisense lncRNA gene predicted gene, 26674
Cpgi1286 10 8885629 to 8886766 1137 CpG island CpG island 1286
Tssr96654 10 8885661 to 8885698 37 - TSS region transcription start site region 96654
Tssr96655 10 8885868 to 8885885 17 - TSS region transcription start site region 96655
Tssr96656 10 8885895 to 8885947 52 - TSS region transcription start site region 96656
Tssr96657 10 8886015 to 8886030 15 - TSS region transcription start site region 96657
Tssr96658 10 8886033 to 8886076 43 - TSS region transcription start site region 96658
Tssr96659 10 8886092 to 8886101 9 - TSS region transcription start site region 96659
Tssr96660 10 8886116 to 8886125 9 - TSS region transcription start site region 96660
Tssr96661 10 8886201 to 8886216 15 - TSS region transcription start site region 96661
Tssr96662 10 8886231 to 8886245 14 - TSS region transcription start site region 96662
Tssr96663 10 8886525 to 8886543 18 - TSS region transcription start site region 96663
Tssr96664 10 8886589 to 8886612 23 - TSS region transcription start site region 96664
Tssr92337 10 8903965 to 8903975 10 + TSS region transcription start site region 92337
Gm48727 10 8903981 to 8945137 41156 + lincRNA gene predicted gene, 48727
Tssr96665 10 8945235 to 8945269 34 - TSS region transcription start site region 96665
Tssr96666 10 8945281 to 8945294 13 - TSS region transcription start site region 96666
Gm48728 10 8951949 to 8967244 15295 + lincRNA gene predicted gene, 48728
D10Jpk2 10 9003216 to 9003360 144 DNA segment DNA segment, Chr 10, Japan, Kominami 2
Tssr96667 10 9027225 to 9027255 30 - TSS region transcription start site region 96667
Tssr96668 10 9027295 to 9027335 40 - TSS region transcription start site region 96668
D10Mit279 10 9048469 to 9048745 276 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 279
Gm48743 10 9069419 to 9071475 2056 - unclassified gene predicted gene, 48743
Tssr96669 10 9071150 to 9071154 4 - TSS region transcription start site region 96669
Gm48744 10 9223971 to 9224751 780 - unclassified gene predicted gene, 48744
9030613N10Rik 10 9298011 to 9300615 2604 unclassified gene RIKEN cDNA 9030613N10 gene
Gm48748 10 9329851 to 9336618 6767 - lincRNA gene predicted gene, 48748
Tssr92338 10 9336656 to 9336682 26 + TSS region transcription start site region 92338
Gm48749 10 9336682 to 9395259 58577 + lincRNA gene predicted gene, 48749
Gm48750 10 9356155 to 9356532 377 + pseudogene predicted gene, 48750
D10Mit306 10 9387648 to 9387869 221 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-306
D10Mit77 10 9396646 to 9396791 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 77
Geot 10 9413375 to 9413521 146 QTL geotaxia
Sluc44g 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44g
Sluc44f 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44f
Sluc44e 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44e
Sluc44d 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44d
Sluc44c 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44c
Sluc44b 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44b
Sluc44a 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44a
Sluc44 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44
Sluc29 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 29
D10Mit28 10 9413375 to 9413521 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 28
Mts2 10 9413375 to 9413521 146 QTL mammary tumor susceptibility 2
Gm48751 10 9482929 to 9487202 4273 - unclassified gene predicted gene, 48751
Gm48753 10 9513937 to 9514106 169 + pseudogene predicted gene, 48753
Gm9930 10 9532531 to 9535681 3150 - protein coding gene predicted gene 9930
Gm48755 10 9546246 to 9547521 1275 - unclassified gene predicted gene, 48755
Gm48757 10 9566376 to 9567605 1229 + lincRNA gene predicted gene, 48757
Gm48758 10 9587602 to 9588114 512 - pseudogene predicted gene, 48758
Gm48759 10 9596472 to 9599423 2951 + lincRNA gene predicted gene, 48759
Samd5 10 9622936 to 9675208 52272 - protein coding gene sterile alpha motif domain containing 5
5830408B19Rik 10 9622943 to 9624848 1905 unclassified gene RIKEN cDNA 5830408B19 gene
Tssr96670 10 9649717 to 9649733 16 - TSS region transcription start site region 96670
Gm48760 10 9667676 to 9668176 500 + pseudogene predicted gene, 48760
Cpgi1287 10 9674367 to 9676148 1781 CpG island CpG island 1287
Tssr96671 10 9675163 to 9675243 80 - TSS region transcription start site region 96671
Tssr96672 10 9675399 to 9675416 17 - TSS region transcription start site region 96672
Tssr96673 10 9675799 to 9675819 20 - TSS region transcription start site region 96673
Tssr96674 10 9675825 to 9675847 22 - TSS region transcription start site region 96674
Cpgi1288 10 9683786 to 9684001 215 CpG island CpG island 1288
Gm6150 10 9684722 to 9691909 7187 + lncRNA gene predicted gene 6150
Gm31471 10 9694841 to 9699214 4373 - lncRNA gene predicted gene, 31471
Tssr92339 10 9732555 to 9732558 3 + TSS region transcription start site region 92339
Gm19161 10 9748447 to 9749180 733 - pseudogene predicted gene, 19161
Stxbp5 10 9755547 to 9901079 145532 - protein coding gene syntaxin binding protein 5 (tomosyn)
Tssr96675 10 9782828 to 9782831 3 - TSS region transcription start site region 96675
Cpgi1289 10 9797964 to 9798194 230 CpG island CpG island 1289
Tssr96676 10 9811992 to 9812034 42 - TSS region transcription start site region 96676
Tssr3134 10 9833635 to 9833637 2 + TSS region transcription start site region 3134
Gm25635 10 9852019 to 9852149 130 - snoRNA gene predicted gene, 25635
Tssr92340 10 9882208 to 9882210 2 + TSS region transcription start site region 92340
Tssr96677 10 9886707 to 9886725 18 - TSS region transcription start site region 96677
Tssr96678 10 9898323 to 9898328 5 - TSS region transcription start site region 96678
Cpgi1290 10 9900294 to 9901683 1389 CpG island CpG island 1290
Tssr96679 10 9901160 to 9901250 90 - TSS region transcription start site region 96679
Tssr92341 10 9901290 to 9901303 13 + TSS region transcription start site region 92341
Gm46210 10 9901313 to 9918843 17530 + lincRNA gene predicted gene, 46210
Tssr3135 10 9976643 to 9976665 22 + TSS region transcription start site region 3135
Tssr96680 10 9996303 to 9996307 4 - TSS region transcription start site region 96680
Gm48282 10 10040920 to 10041426 506 + pseudogene predicted gene, 48282
Gm48278 10 10083943 to 10092295 8352 + lincRNA gene predicted gene, 48278
Gm48281 10 10100420 to 10110099 9679 - lincRNA gene predicted gene, 48281
Gm25682 10 10100953 to 10101116 163 + snRNA gene predicted gene, 25682
Gm48279 10 10122486 to 10126891 4405 + lincRNA gene predicted gene, 48279
Gm48280 10 10131272 to 10131640 368 + pseudogene predicted gene, 48280
Gm28905 10 10168619 to 9975947 -192672 + lincRNA gene predicted gene 28905
Tssr92342 10 10184591 to 10184614 23 + TSS region transcription start site region 92342
Gm44555 10 10193524 to 10193671 147 + pseudogene predicted gene 44555
Tssr3136 10 10203121 to 10203125 4 + TSS region transcription start site region 3136
Gm31904 10 10230736 to 10234850 4114 - lincRNA gene predicted gene, 31904
D10Mit123 10 10232521 to 10232663 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 123
Sysbp1 10 10232521 to 87565233 77332712 QTL systolic blood pressure 1
Tssr96681 10 10234828 to 10234837 9 - TSS region transcription start site region 96681
Tssr96682 10 10234844 to 10234854 10 - TSS region transcription start site region 96682
Tssr96683 10 10234873 to 10234882 9 - TSS region transcription start site region 96683
Tssr96684 10 10234908 to 10234915 7 - TSS region transcription start site region 96684
Tssr92343 10 10234968 to 10234974 6 + TSS region transcription start site region 92343
4930598N05Rik 10 10234974 to 10258698 23724 + lncRNA gene RIKEN cDNA 4930598N05 gene
Tssr92344 10 10234987 to 10234994 7 + TSS region transcription start site region 92344
Tssr92345 10 10234998 to 10235023 25 + TSS region transcription start site region 92345
Gm48324 10 10270402 to 10296929 26527 - lincRNA gene predicted gene, 48324
Tssr96685 10 10296922 to 10296935 13 - TSS region transcription start site region 96685
Tssr96686 10 10296962 to 10296967 5 - TSS region transcription start site region 96686
D10Mit280 10 10310969 to 10311080 111 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 280
D10Mit280.1 10 10311108 to 10311254 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 280.1
Tssr3137 10 10334648 to 10334653 5 - TSS region transcription start site region 3137
Adgb 10 10335703 to 10472326 136623 - protein coding gene androglobin
Tssr96687 10 10339728 to 10339730 2 - TSS region transcription start site region 96687
Tssr92346 10 10343097 to 10343101 4 + TSS region transcription start site region 92346
Gm15568 10 10343115 to 10344327 1212 + pseudogene predicted gene 15568
Tssr96688 10 10344733 to 10344736 3 - TSS region transcription start site region 96688
D10Mit312 10 10390607 to 10390729 122 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-312
Gm48326 10 10465414 to 10465534 120 - pseudogene predicted gene, 48326
Tssr96689 10 10472393 to 10472405 12 - TSS region transcription start site region 96689
Tssr96690 10 10475033 to 10475053 20 - TSS region transcription start site region 96690
Tssr96691 10 10475067 to 10475083 16 - TSS region transcription start site region 96691
D10Mit245 10 10516079 to 10516177 98 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 245
Rab32 10 10545039 to 10558207 13168 - protein coding gene RAB32, member RAS oncogene family
Cpgi1291 10 10557671 to 10558345 674 CpG island CpG island 1291
Tssr96692 10 10558096 to 10558125 29 - TSS region transcription start site region 96692
Tssr96693 10 10558131 to 10558190 59 - TSS region transcription start site region 96693
Tssr96694 10 10558199 to 10558250 51 - TSS region transcription start site region 96694
Gm5177 10 10605945 to 10616313 10368 + pseudogene predicted pseudogene 5177
Gm23601 10 10663154 to 10663284 130 + snoRNA gene predicted gene, 23601
Gm10944 10 10681348 to 10681858 510 + protein coding gene predicted gene 10944
Grm1 10 10686059 to 11082356 396297 - protein coding gene glutamate receptor, metabotropic 1
Tssr96695 10 10688943 to 10688956 13 - TSS region transcription start site region 96695
Cpgi1292 10 10689018 to 10689682 664 CpG island CpG island 1292
Gm48400 10 10730629 to 10731126 497 + pseudogene predicted gene, 48400
Tssr92347 10 10748965 to 10748974 9 + TSS region transcription start site region 92347
4930567K20Rik 10 10751046 to 10758131 7085 + antisense lncRNA gene RIKEN cDNA 4930567K20 gene
Tssr92348 10 10751073 to 10751112 39 + TSS region transcription start site region 92348
Tssr92349 10 10751120 to 10751130 10 + TSS region transcription start site region 92349
Cpgi1293 10 10936334 to 10936574 240 CpG island CpG island 1293
Gm48406 10 11035916 to 11036144 228 + pseudogene predicted gene, 48406
Tssr96696 10 11045585 to 11045596 11 - TSS region transcription start site region 96696
Cpgi1294 10 11080228 to 11080854 626 CpG island CpG island 1294
Tssr96697 10 11080987 to 11081023 36 - TSS region transcription start site region 96697
Tssr96698 10 11081092 to 11081132 40 - TSS region transcription start site region 96698
Cpgi1295 10 11081577 to 11081954 377 CpG island CpG island 1295
Tssr96699 10 11082287 to 11082372 85 - TSS region transcription start site region 96699
Cpgi1296 10 11149164 to 11150084 920 CpG island CpG island 1296
Tssr92350 10 11149387 to 11149400 13 + TSS region transcription start site region 92350
Tssr92351 10 11149406 to 11149417 11 + TSS region transcription start site region 92351
Shprh 10 11149427 to 11217595 68168 + protein coding gene SNF2 histone linker PHD RING helicase
Tssr92352 10 11149449 to 11149513 64 + TSS region transcription start site region 92352
Gm16577 10 11212280 to 11212979 699 - antisense lncRNA gene predicted gene 16577
4930432B10Rik 10 11244790 to 11281221 36431 - bidirectional promoter lncRNA gene RIKEN cDNA 4930432B10 gene
Tssr96700 10 11280360 to 11280361 1 - TSS region transcription start site region 96700
Cpgi1297 10 11280533 to 11282123 1590 CpG island CpG island 1297
Tssr92353 10 11281025 to 11281041 16 + TSS region transcription start site region 92353
Tssr96701 10 11281191 to 11281248 57 - TSS region transcription start site region 96701
Tssr92354 10 11281304 to 11281357 53 + TSS region transcription start site region 92354
Fbxo30 10 11281330 to 11297969 16639 + protein coding gene F-box protein 30
Tssr92355 10 11281360 to 11281383 23 + TSS region transcription start site region 92355
Tssr92356 10 11281553 to 11281560 7 + TSS region transcription start site region 92356
Tssr92357 10 11281583 to 11281620 37 + TSS region transcription start site region 92357
Tssr92358 10 11283214 to 11283218 4 + TSS region transcription start site region 92358
Tssr92359 10 11285004 to 11285008 4 + TSS region transcription start site region 92359
Tssr92360 10 11286234 to 11286237 3 + TSS region transcription start site region 92360
Tssr92361 10 11323419 to 11323424 5 + TSS region transcription start site region 92361
Gm48666 10 11330137 to 11330415 278 - pseudogene predicted gene, 48666
Gm25979 10 11330489 to 11330626 137 - snoRNA gene predicted gene, 25979
Cpgi1298 10 11343105 to 11344046 941 CpG island CpG island 1298
Tssr92362 10 11343387 to 11343506 119 + TSS region transcription start site region 92362
Epm2a 10 11343445 to 11457477 114032 + protein coding gene epilepsy, progressive myoclonic epilepsy, type 2 gene alpha
Tssr92363 10 11356123 to 11356128 5 + TSS region transcription start site region 92363
Rpl17-ps11 10 11386881 to 11387604 723 - pseudogene ribosomal protein L17, pseudogene 11
Cpgi1299 10 11491974 to 11492189 215 CpG island CpG island 1299
Tssr96702 10 11492001 to 11492013 12 - TSS region transcription start site region 96702
Tssr96703 10 11492109 to 11492126 17 - TSS region transcription start site region 96703
Tssr92364 10 11492125 to 11492146 21 + TSS region transcription start site region 92364
Tssr96704 10 11492174 to 11492178 4 - TSS region transcription start site region 96704
Gm48679 10 11505296 to 11505933 637 + pseudogene predicted gene, 48679
Gm48680 10 11580086 to 11587244 7158 + lincRNA gene predicted gene, 48680
Gm9797 10 11609223 to 11609835 612 + pseudogene predicted pseudogene 9797
Tssr92365 10 11609256 to 11609269 13 + TSS region transcription start site region 92365
Xiaf3 10 11642896 to 53772211 42129315 heritable phenotypic marker X inactivation autosomal factor 3
D10Mit80 10 11642896 to 11643049 153 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 80
Gm22546 10 11648005 to 11648134 129 + snoRNA gene predicted gene, 22546
D10Mit79 10 11800265 to 11800463 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 79
Gm48697 10 11824413 to 11841931 17518 - lincRNA gene predicted gene, 48697
D10Mit154 10 11827495 to 11827625 130 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 154
Gm48698 10 11838623 to 11838895 272 - pseudogene predicted gene, 48698
Tssr96705 10 11869254 to 11869300 46 - TSS region transcription start site region 96705
Gm22194 10 11940973 to 11941067 94 + miRNA gene predicted gene, 22194
Gm25011 10 11959880 to 11960005 125 + snoRNA gene predicted gene, 25011
D10Mit153 10 11962879 to 11963028 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 153
Gm48721 10 12002790 to 12009771 6981 - lincRNA gene predicted gene, 48721
Gm48722 10 12020860 to 12031440 10580 - lincRNA gene predicted gene, 48722
Gm40601 10 12058648 to 12088407 29759 + lncRNA gene predicted gene, 40601
Mop2 10 29152428 to 9413375 -19739053 QTL morphine preference 2