Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:88643994-89649762

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48106 10 88650106 to 88658230 8124 - pseudogene predicted gene, 48106
Gm48108 10 88670495 to 88671269 774 - pseudogene predicted gene, 48108
Gm29807 10 88673022 to 88673393 371 + pseudogene predicted gene, 29807
Spic 10 88675269 to 88683023 7754 - protein coding gene Spi-C transcription factor (Spi-1/PU.1 related)
Tssr98849 10 88675759 to 88675768 9 - TSS region transcription start site region 98849
Tssr98850 10 88683021 to 88683025 4 - TSS region transcription start site region 98850
Tssr98851 10 88685029 to 88685034 5 - TSS region transcription start site region 98851
Gm46192 10 88704595 to 88705075 480 + pseudogene predicted gene, 46192
n-R5s79 10 88710008 to 88710127 119 - rRNA gene nuclear encoded rRNA 5S 79
Gm48144 10 88715650 to 88716094 444 - pseudogene predicted gene, 48144
Gm4925 10 88729541 to 88731101 1560 - pseudogene predicted gene 4925
Cpgi2085 10 88730534 to 88732252 1718 CpG island CpG island 2085
Tssr95161 10 88731056 to 88731073 17 + TSS region transcription start site region 95161
Tssr95162 10 88731093 to 88731106 13 + TSS region transcription start site region 95162
Tssr95163 10 88731352 to 88731400 48 + TSS region transcription start site region 95163
Tssr95164 10 88731404 to 88731423 19 + TSS region transcription start site region 95164
Arl1 10 88731414 to 88743202 11788 + protein coding gene ADP-ribosylation factor-like 1
Tssr95165 10 88731433 to 88731450 17 + TSS region transcription start site region 95165
Tssr95166 10 88732911 to 88732915 4 + TSS region transcription start site region 95166
Tssr95167 10 88739799 to 88739803 4 + TSS region transcription start site region 95167
Tssr95168 10 88740146 to 88740153 7 + TSS region transcription start site region 95168
Tssr3312 10 88740172 to 88740180 8 + TSS region transcription start site region 3312
Utp20 10 88746607 to 88826804 80197 - protein coding gene UTP20 small subunit processome component
Tssr98852 10 88751293 to 88751297 4 - TSS region transcription start site region 98852
Tssr98853 10 88765489 to 88765492 3 - TSS region transcription start site region 98853
Tssr98854 10 88765582 to 88765598 16 - TSS region transcription start site region 98854
Tssr98855 10 88788381 to 88788388 7 - TSS region transcription start site region 98855
Cpgi2086 10 88826382 to 88826916 534 CpG island CpG island 2086
Tssr98856 10 88826709 to 88826718 9 - TSS region transcription start site region 98856
Tssr98857 10 88826737 to 88826742 5 - TSS region transcription start site region 98857
Tssr98858 10 88826772 to 88826837 65 - TSS region transcription start site region 98858
Tssr95169 10 88826849 to 88826882 33 + TSS region transcription start site region 95169
9430024C03Rik 10 88874599 to 88875800 1201 unclassified gene RIKEN cDNA 9430024C03 gene
Cpgi2087 10 88885693 to 88886612 919 CpG island CpG island 2087
Tssr95170 10 88885903 to 88885917 14 + TSS region transcription start site region 95170
Tssr95171 10 88885932 to 88885942 10 + TSS region transcription start site region 95171
Slc5a8 10 88885992 to 88929515 43523 + protein coding gene solute carrier family 5 (iodide transporter), member 8
Tssr95172 10 88885995 to 88886010 15 + TSS region transcription start site region 95172
Tssr95173 10 88886015 to 88886031 16 + TSS region transcription start site region 95173
Ano4 10 88948994 to 89344762 395768 - protein coding gene anoctamin 4
Cpgi2088 10 88949532 to 88949709 177 CpG island CpG island 2088
Gm30769 10 89257132 to 89259142 2010 + lncRNA gene predicted gene, 30769
Tssr98859 10 89257515 to 89257527 12 - TSS region transcription start site region 98859
Tssr98860 10 89257578 to 89257599 21 - TSS region transcription start site region 98860
Tssr98861 10 89257645 to 89257657 12 - TSS region transcription start site region 98861
Tssr98862 10 89257675 to 89257694 19 - TSS region transcription start site region 98862
Tssr98863 10 89257696 to 89257712 16 - TSS region transcription start site region 98863
Tssr98864 10 89257806 to 89257831 25 - TSS region transcription start site region 98864
Cpgi2089 10 89344397 to 89345329 932 CpG island CpG island 2089
Tssr98865 10 89345075 to 89345096 21 - TSS region transcription start site region 98865
Gas2l3 10 89408823 to 89443967 35144 - protein coding gene growth arrest-specific 2 like 3
Tssr98866 10 89410838 to 89410851 13 - TSS region transcription start site region 98866
Tssr98867 10 89417709 to 89417713 4 - TSS region transcription start site region 98867
Tssr98868 10 89434054 to 89434091 37 - TSS region transcription start site region 98868
Tssr98869 10 89434648 to 89434659 11 - TSS region transcription start site region 98869
Tssr98870 10 89434665 to 89434705 40 - TSS region transcription start site region 98870
Tssr98871 10 89434888 to 89434894 6 - TSS region transcription start site region 98871
Cpgi2090 10 89443351 to 89444232 881 CpG island CpG island 2090
Tssr95174 10 89443436 to 89443445 9 + TSS region transcription start site region 95174
Tssr95175 10 89443495 to 89443520 25 + TSS region transcription start site region 95175
Tssr98872 10 89443888 to 89443962 74 - TSS region transcription start site region 98872
Tssr95176 10 89444048 to 89444072 24 + TSS region transcription start site region 95176
Nr1h4 10 89454234 to 89533585 79351 - protein coding gene nuclear receptor subfamily 1, group H, member 4
Tssr95177 10 89465403 to 89465407 4 + TSS region transcription start site region 95177
Tssr98873 10 89481011 to 89481016 5 - TSS region transcription start site region 98873
Tssr98874 10 89506631 to 89506650 19 - TSS region transcription start site region 98874
Tssr98875 10 89533529 to 89533541 12 - TSS region transcription start site region 98875
Tssr98876 10 89533550 to 89533590 40 - TSS region transcription start site region 98876
Tssr98877 10 89533591 to 89533635 44 - TSS region transcription start site region 98877
Tssr98878 10 89548228 to 89548251 23 - TSS region transcription start site region 98878
Gm48087 10 89555083 to 89555719 636 - pseudogene predicted gene, 48087
Slc17a8 10 89574020 to 89621249 47229 - protein coding gene solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
Tssr98879 10 89592926 to 89592952 26 - TSS region transcription start site region 98879
Tssr98880 10 89600692 to 89600719 27 - TSS region transcription start site region 98880
Tssr98881 10 89621219 to 89621237 18 - TSS region transcription start site region 98881
Tssr98882 10 89621263 to 89621275 12 - TSS region transcription start site region 98882
Tssr98883 10 89621279 to 89621290 11 - TSS region transcription start site region 98883
Tssr98884 10 89621429 to 89621464 35 - TSS region transcription start site region 98884
Tssr98885 10 89632008 to 89632019 11 - TSS region transcription start site region 98885
Scyl2 10 89638721 to 89686285 47564 - protein coding gene SCY1-like 2 (S. cerevisiae)
Tssr98886 10 89647023 to 89647035 12 - TSS region transcription start site region 98886