Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:88452472-88755340

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2082 10 88459340 to 88460088 748 CpG island CpG island 2082
Sycp3 10 88459587 to 88473236 13649 + protein coding gene synaptonemal complex protein 3
Tssr3309 10 88459591 to 88459615 24 + TSS region transcription start site region 3309
Tssr3310 10 88459620 to 88459639 19 + TSS region transcription start site region 3310
Tssr95158 10 88459656 to 88459670 14 + TSS region transcription start site region 95158
Chpt1 10 88469513 to 88503970 34457 - protein coding gene choline phosphotransferase 1
Tssr98838 10 88471150 to 88471185 35 - TSS region transcription start site region 98838
Tssr98839 10 88479487 to 88479491 4 - TSS region transcription start site region 98839
Cpgi2083 10 88503267 to 88504376 1109 CpG island CpG island 2083
Tssr98840 10 88503859 to 88503899 40 - TSS region transcription start site region 98840
Tssr98841 10 88503912 to 88503923 11 - TSS region transcription start site region 98841
Tssr98842 10 88503928 to 88503950 22 - TSS region transcription start site region 98842
Tssr98843 10 88503952 to 88503973 21 - TSS region transcription start site region 98843
Tssr98844 10 88504159 to 88504167 8 - TSS region transcription start site region 98844
Mybpc1 10 88518279 to 88605152 86873 - protein coding gene myosin binding protein C, slow-type
Tssr98845 10 88537288 to 88537290 2 - TSS region transcription start site region 98845
D10Mit263 10 88547935 to 88548049 114 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 263
Cpgi2084 10 88560194 to 88560378 184 CpG island CpG island 2084
Tssr95159 10 88570584 to 88570603 19 + TSS region transcription start site region 95159
D10Mit209 10 88583386 to 88583534 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 209
Tssr98846 10 88583567 to 88583577 10 - TSS region transcription start site region 98846
Tssr98847 10 88583752 to 88583763 11 - TSS region transcription start site region 98847
Gm48752 10 88602472 to 88605340 2868 + unclassified gene predicted gene, 48752
Tssr98848 10 88605017 to 88605033 16 - TSS region transcription start site region 98848
Tssr3311 10 88605134 to 88605154 20 - TSS region transcription start site region 3311
Tssr95160 10 88605146 to 88605151 5 + TSS region transcription start site region 95160
Gm8435 10 88641379 to 88642170 791 + pseudogene predicted gene 8435
Gm48106 10 88650106 to 88658230 8124 - pseudogene predicted gene, 48106
Gm48108 10 88670495 to 88671269 774 - pseudogene predicted gene, 48108
Gm29807 10 88673022 to 88673393 371 + pseudogene predicted gene, 29807
Spic 10 88675269 to 88683023 7754 - protein coding gene Spi-C transcription factor (Spi-1/PU.1 related)
Tssr98849 10 88675759 to 88675768 9 - TSS region transcription start site region 98849
Tssr98850 10 88683021 to 88683025 4 - TSS region transcription start site region 98850
Tssr98851 10 88685029 to 88685034 5 - TSS region transcription start site region 98851
Gm46192 10 88704595 to 88705075 480 + pseudogene predicted gene, 46192
n-R5s79 10 88710008 to 88710127 119 - rRNA gene nuclear encoded rRNA 5S 79
Gm48144 10 88715650 to 88716094 444 - pseudogene predicted gene, 48144
Gm4925 10 88729541 to 88731101 1560 - pseudogene predicted gene 4925
Cpgi2085 10 88730534 to 88732252 1718 CpG island CpG island 2085
Tssr95161 10 88731056 to 88731073 17 + TSS region transcription start site region 95161
Tssr95162 10 88731093 to 88731106 13 + TSS region transcription start site region 95162
Tssr95163 10 88731352 to 88731400 48 + TSS region transcription start site region 95163
Tssr95164 10 88731404 to 88731423 19 + TSS region transcription start site region 95164
Arl1 10 88731414 to 88743202 11788 + protein coding gene ADP-ribosylation factor-like 1
Tssr95165 10 88731433 to 88731450 17 + TSS region transcription start site region 95165
Tssr95166 10 88732911 to 88732915 4 + TSS region transcription start site region 95166
Tssr95167 10 88739799 to 88739803 4 + TSS region transcription start site region 95167
Tssr95168 10 88740146 to 88740153 7 + TSS region transcription start site region 95168
Tssr3312 10 88740172 to 88740180 8 + TSS region transcription start site region 3312
Utp20 10 88746607 to 88826804 80197 - protein coding gene UTP20 small subunit processome component
Tssr98852 10 88751293 to 88751297 4 - TSS region transcription start site region 98852