Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:8839851-9826618

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sash1 10 8722219 to 8886070 163851 - protein coding gene SAM and SH3 domain containing 1
Tssr96652 10 8852187 to 8852190 3 - TSS region transcription start site region 96652
4930553I21Rik 10 8860864 to 8861443 579 - unclassified gene RIKEN cDNA 4930553I21 gene
Tssr96653 10 8861442 to 8861446 4 - TSS region transcription start site region 96653
Tssr92334 10 8866595 to 8866603 8 + TSS region transcription start site region 92334
Tssr92335 10 8874219 to 8874240 21 + TSS region transcription start site region 92335
Tssr92336 10 8884062 to 8884098 36 + TSS region transcription start site region 92336
Gm26674 10 8884637 to 8886878 2241 + antisense lncRNA gene predicted gene, 26674
Cpgi1286 10 8885629 to 8886766 1137 CpG island CpG island 1286
Tssr96654 10 8885661 to 8885698 37 - TSS region transcription start site region 96654
Tssr96655 10 8885868 to 8885885 17 - TSS region transcription start site region 96655
Tssr96656 10 8885895 to 8885947 52 - TSS region transcription start site region 96656
Tssr96657 10 8886015 to 8886030 15 - TSS region transcription start site region 96657
Tssr96658 10 8886033 to 8886076 43 - TSS region transcription start site region 96658
Tssr96659 10 8886092 to 8886101 9 - TSS region transcription start site region 96659
Tssr96660 10 8886116 to 8886125 9 - TSS region transcription start site region 96660
Tssr96661 10 8886201 to 8886216 15 - TSS region transcription start site region 96661
Tssr96662 10 8886231 to 8886245 14 - TSS region transcription start site region 96662
Tssr96663 10 8886525 to 8886543 18 - TSS region transcription start site region 96663
Tssr96664 10 8886589 to 8886612 23 - TSS region transcription start site region 96664
Tssr92337 10 8903965 to 8903975 10 + TSS region transcription start site region 92337
Gm48727 10 8903981 to 8945137 41156 + lincRNA gene predicted gene, 48727
Tssr96665 10 8945235 to 8945269 34 - TSS region transcription start site region 96665
Tssr96666 10 8945281 to 8945294 13 - TSS region transcription start site region 96666
Gm48728 10 8951949 to 8967244 15295 + lincRNA gene predicted gene, 48728
D10Jpk2 10 9003216 to 9003360 144 DNA segment DNA segment, Chr 10, Japan, Kominami 2
Tssr96667 10 9027225 to 9027255 30 - TSS region transcription start site region 96667
Tssr96668 10 9027295 to 9027335 40 - TSS region transcription start site region 96668
D10Mit279 10 9048469 to 9048745 276 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 279
Gm48743 10 9069419 to 9071475 2056 - unclassified gene predicted gene, 48743
Tssr96669 10 9071150 to 9071154 4 - TSS region transcription start site region 96669
Gm48744 10 9223971 to 9224751 780 - unclassified gene predicted gene, 48744
9030613N10Rik 10 9298011 to 9300615 2604 unclassified gene RIKEN cDNA 9030613N10 gene
Gm48748 10 9329851 to 9336618 6767 - lincRNA gene predicted gene, 48748
Tssr92338 10 9336656 to 9336682 26 + TSS region transcription start site region 92338
Gm48749 10 9336682 to 9395259 58577 + lincRNA gene predicted gene, 48749
Gm48750 10 9356155 to 9356532 377 + pseudogene predicted gene, 48750
D10Mit306 10 9387648 to 9387869 221 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-306
D10Mit77 10 9396646 to 9396791 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 77
Geot 10 9413375 to 9413521 146 QTL geotaxia
D10Mit28 10 9413375 to 9413521 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 28
Sluc44 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44
Sluc44a 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44a
Sluc44b 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44b
Sluc44c 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44c
Sluc44d 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44d
Sluc44e 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44e
Sluc44f 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44f
Sluc44g 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44g
Sluc29 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 29
Mts2 10 9413375 to 9413521 146 QTL mammary tumor susceptibility 2
Gm48751 10 9482929 to 9487202 4273 - unclassified gene predicted gene, 48751
Gm48753 10 9513937 to 9514106 169 + pseudogene predicted gene, 48753
Gm9930 10 9532531 to 9535681 3150 - protein coding gene predicted gene 9930
Gm48755 10 9546246 to 9547521 1275 - unclassified gene predicted gene, 48755
Gm48757 10 9566376 to 9567605 1229 + lincRNA gene predicted gene, 48757
Gm48758 10 9587602 to 9588114 512 - pseudogene predicted gene, 48758
Gm48759 10 9596472 to 9599423 2951 + lincRNA gene predicted gene, 48759
Samd5 10 9622936 to 9675208 52272 - protein coding gene sterile alpha motif domain containing 5
5830408B19Rik 10 9622943 to 9624848 1905 unclassified gene RIKEN cDNA 5830408B19 gene
Tssr96670 10 9649717 to 9649733 16 - TSS region transcription start site region 96670
Gm48760 10 9667676 to 9668176 500 + pseudogene predicted gene, 48760
Cpgi1287 10 9674367 to 9676148 1781 CpG island CpG island 1287
Tssr96671 10 9675163 to 9675243 80 - TSS region transcription start site region 96671
Tssr96672 10 9675399 to 9675416 17 - TSS region transcription start site region 96672
Tssr96673 10 9675799 to 9675819 20 - TSS region transcription start site region 96673
Tssr96674 10 9675825 to 9675847 22 - TSS region transcription start site region 96674
Cpgi1288 10 9683786 to 9684001 215 CpG island CpG island 1288
Gm6150 10 9684722 to 9691909 7187 + lncRNA gene predicted gene 6150
Gm31471 10 9694841 to 9699214 4373 - lncRNA gene predicted gene, 31471
Tssr92339 10 9732555 to 9732558 3 + TSS region transcription start site region 92339
Gm19161 10 9748447 to 9749180 733 - pseudogene predicted gene, 19161
Stxbp5 10 9755547 to 9901079 145532 - protein coding gene syntaxin binding protein 5 (tomosyn)
Tssr96675 10 9782828 to 9782831 3 - TSS region transcription start site region 96675
Cpgi1289 10 9797964 to 9798194 230 CpG island CpG island 1289
Tssr96676 10 9811992 to 9812034 42 - TSS region transcription start site region 96676
Mop2 10 29152428 to 9413375 -19739053 QTL morphine preference 2