Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:88296777-91181413

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283 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssrq4 10 82655104 to 91020240 8365136 QTL stress response QTL 4
Gm48476 10 88309813 to 88310132 319 - pseudogene predicted gene, 48476
Dram1 10 88322801 to 88364383 41582 - protein coding gene DNA-damage regulated autophagy modulator 1
Tssr98827 10 88323130 to 88323151 21 - TSS region transcription start site region 98827
Tssr98828 10 88336164 to 88336189 25 - TSS region transcription start site region 98828
Cpgi2079 10 88336752 to 88337034 282 CpG island CpG island 2079
Tssr98829 10 88338627 to 88338630 3 - TSS region transcription start site region 98829
Tssr98830 10 88338668 to 88338681 13 - TSS region transcription start site region 98830
Tssr98831 10 88343936 to 88343977 41 - TSS region transcription start site region 98831
Tssr98832 10 88354421 to 88354427 6 - TSS region transcription start site region 98832
Cpgi2080 10 88356698 to 88357583 885 CpG island CpG island 2080
Tssr98833 10 88356970 to 88356985 15 - TSS region transcription start site region 98833
Tssr98834 10 88356990 to 88357122 132 - TSS region transcription start site region 98834
Tssr95152 10 88357184 to 88357204 20 + TSS region transcription start site region 95152
Gm40734 10 88357322 to 88371636 14314 + lncRNA gene predicted gene, 40734
Tssr98835 10 88357466 to 88357469 3 - TSS region transcription start site region 98835
Gm40733 10 88368052 to 88379133 11081 - lncRNA gene predicted gene, 40733
Cpgi2081 10 88378926 to 88379938 1012 CpG island CpG island 2081
Tssr98836 10 88379051 to 88379073 22 - TSS region transcription start site region 98836
Tssr95153 10 88379127 to 88379169 42 + TSS region transcription start site region 95153
Tssr95154 10 88379217 to 88379299 82 + TSS region transcription start site region 95154
Gnptab 10 88379232 to 88447330 68098 + protein coding gene N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
Gm26546 10 88379244 to 88383711 4467 - lincRNA gene predicted gene, 26546
Tssr98837 10 88380156 to 88380180 24 - TSS region transcription start site region 98837
Tssr95155 10 88414063 to 88414069 6 + TSS region transcription start site region 95155
B430006N09Rik 10 88415501 to 88415888 387 unclassified non-coding RNA gene RIKEN cDNA B430006N09 gene
Tssr95156 10 88433998 to 88434009 11 + TSS region transcription start site region 95156
Tssr95157 10 88437480 to 88437492 12 + TSS region transcription start site region 95157
Gm16235 10 88444236 to 88449887 5651 - antisense lncRNA gene predicted gene 16235
Cpgi2082 10 88459340 to 88460088 748 CpG island CpG island 2082
Sycp3 10 88459587 to 88473236 13649 + protein coding gene synaptonemal complex protein 3
Tssr3309 10 88459591 to 88459615 24 + TSS region transcription start site region 3309
Tssr3310 10 88459620 to 88459639 19 + TSS region transcription start site region 3310
Tssr95158 10 88459656 to 88459670 14 + TSS region transcription start site region 95158
Chpt1 10 88469513 to 88503970 34457 - protein coding gene choline phosphotransferase 1
Tssr98838 10 88471150 to 88471185 35 - TSS region transcription start site region 98838
Tssr98839 10 88479487 to 88479491 4 - TSS region transcription start site region 98839
Cpgi2083 10 88503267 to 88504376 1109 CpG island CpG island 2083
Tssr98840 10 88503859 to 88503899 40 - TSS region transcription start site region 98840
Tssr98841 10 88503912 to 88503923 11 - TSS region transcription start site region 98841
Tssr98842 10 88503928 to 88503950 22 - TSS region transcription start site region 98842
Tssr98843 10 88503952 to 88503973 21 - TSS region transcription start site region 98843
Tssr98844 10 88504159 to 88504167 8 - TSS region transcription start site region 98844
Mybpc1 10 88518279 to 88605152 86873 - protein coding gene myosin binding protein C, slow-type
Tssr98845 10 88537288 to 88537290 2 - TSS region transcription start site region 98845
D10Mit263 10 88547935 to 88548049 114 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 263
Cpgi2084 10 88560194 to 88560378 184 CpG island CpG island 2084
Tssr95159 10 88570584 to 88570603 19 + TSS region transcription start site region 95159
D10Mit209 10 88583386 to 88583534 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 209
Tssr98846 10 88583567 to 88583577 10 - TSS region transcription start site region 98846
Tssr98847 10 88583752 to 88583763 11 - TSS region transcription start site region 98847
Gm48752 10 88602472 to 88605340 2868 + unclassified gene predicted gene, 48752
Tssr98848 10 88605017 to 88605033 16 - TSS region transcription start site region 98848
Tssr3311 10 88605134 to 88605154 20 - TSS region transcription start site region 3311
Tssr95160 10 88605146 to 88605151 5 + TSS region transcription start site region 95160
Gm8435 10 88641379 to 88642170 791 + pseudogene predicted gene 8435
Gm48106 10 88650106 to 88658230 8124 - pseudogene predicted gene, 48106
Gm48108 10 88670495 to 88671269 774 - pseudogene predicted gene, 48108
Gm29807 10 88673022 to 88673393 371 + pseudogene predicted gene, 29807
Spic 10 88675269 to 88683023 7754 - protein coding gene Spi-C transcription factor (Spi-1/PU.1 related)
Tssr98849 10 88675759 to 88675768 9 - TSS region transcription start site region 98849
Tssr98850 10 88683021 to 88683025 4 - TSS region transcription start site region 98850
Tssr98851 10 88685029 to 88685034 5 - TSS region transcription start site region 98851
Gm46192 10 88704595 to 88705075 480 + pseudogene predicted gene, 46192
n-R5s79 10 88710008 to 88710127 119 - rRNA gene nuclear encoded rRNA 5S 79
Gm48144 10 88715650 to 88716094 444 - pseudogene predicted gene, 48144
Gm4925 10 88729541 to 88731101 1560 - pseudogene predicted gene 4925
Cpgi2085 10 88730534 to 88732252 1718 CpG island CpG island 2085
Tssr95161 10 88731056 to 88731073 17 + TSS region transcription start site region 95161
Tssr95162 10 88731093 to 88731106 13 + TSS region transcription start site region 95162
Tssr95163 10 88731352 to 88731400 48 + TSS region transcription start site region 95163
Tssr95164 10 88731404 to 88731423 19 + TSS region transcription start site region 95164
Arl1 10 88731414 to 88743202 11788 + protein coding gene ADP-ribosylation factor-like 1
Tssr95165 10 88731433 to 88731450 17 + TSS region transcription start site region 95165
Tssr95166 10 88732911 to 88732915 4 + TSS region transcription start site region 95166
Tssr95167 10 88739799 to 88739803 4 + TSS region transcription start site region 95167
Tssr95168 10 88740146 to 88740153 7 + TSS region transcription start site region 95168
Tssr3312 10 88740172 to 88740180 8 + TSS region transcription start site region 3312
Utp20 10 88746607 to 88826804 80197 - protein coding gene UTP20 small subunit processome component
Tssr98852 10 88751293 to 88751297 4 - TSS region transcription start site region 98852
Tssr98853 10 88765489 to 88765492 3 - TSS region transcription start site region 98853
Tssr98854 10 88765582 to 88765598 16 - TSS region transcription start site region 98854
Tssr98855 10 88788381 to 88788388 7 - TSS region transcription start site region 98855
Cpgi2086 10 88826382 to 88826916 534 CpG island CpG island 2086
Tssr98856 10 88826709 to 88826718 9 - TSS region transcription start site region 98856
Tssr98857 10 88826737 to 88826742 5 - TSS region transcription start site region 98857
Tssr98858 10 88826772 to 88826837 65 - TSS region transcription start site region 98858
Tssr95169 10 88826849 to 88826882 33 + TSS region transcription start site region 95169
9430024C03Rik 10 88874599 to 88875800 1201 unclassified gene RIKEN cDNA 9430024C03 gene
Cpgi2087 10 88885693 to 88886612 919 CpG island CpG island 2087
Tssr95170 10 88885903 to 88885917 14 + TSS region transcription start site region 95170
Tssr95171 10 88885932 to 88885942 10 + TSS region transcription start site region 95171
Slc5a8 10 88885992 to 88929515 43523 + protein coding gene solute carrier family 5 (iodide transporter), member 8
Tssr95172 10 88885995 to 88886010 15 + TSS region transcription start site region 95172
Tssr95173 10 88886015 to 88886031 16 + TSS region transcription start site region 95173
Ano4 10 88948994 to 89344762 395768 - protein coding gene anoctamin 4
Cpgi2088 10 88949532 to 88949709 177 CpG island CpG island 2088
Gm30769 10 89257132 to 89259142 2010 + lncRNA gene predicted gene, 30769
Tssr98859 10 89257515 to 89257527 12 - TSS region transcription start site region 98859
Tssr98860 10 89257578 to 89257599 21 - TSS region transcription start site region 98860
Tssr98861 10 89257645 to 89257657 12 - TSS region transcription start site region 98861
Tssr98862 10 89257675 to 89257694 19 - TSS region transcription start site region 98862
Tssr98863 10 89257696 to 89257712 16 - TSS region transcription start site region 98863
Tssr98864 10 89257806 to 89257831 25 - TSS region transcription start site region 98864
Cpgi2089 10 89344397 to 89345329 932 CpG island CpG island 2089
Tssr98865 10 89345075 to 89345096 21 - TSS region transcription start site region 98865
Gas2l3 10 89408823 to 89443967 35144 - protein coding gene growth arrest-specific 2 like 3
Tssr98866 10 89410838 to 89410851 13 - TSS region transcription start site region 98866
Tssr98867 10 89417709 to 89417713 4 - TSS region transcription start site region 98867
Tssr98868 10 89434054 to 89434091 37 - TSS region transcription start site region 98868
Tssr98869 10 89434648 to 89434659 11 - TSS region transcription start site region 98869
Tssr98870 10 89434665 to 89434705 40 - TSS region transcription start site region 98870
Tssr98871 10 89434888 to 89434894 6 - TSS region transcription start site region 98871
Cpgi2090 10 89443351 to 89444232 881 CpG island CpG island 2090
Tssr95174 10 89443436 to 89443445 9 + TSS region transcription start site region 95174
Tssr95175 10 89443495 to 89443520 25 + TSS region transcription start site region 95175
Tssr98872 10 89443888 to 89443962 74 - TSS region transcription start site region 98872
Tssr95176 10 89444048 to 89444072 24 + TSS region transcription start site region 95176
Nr1h4 10 89454234 to 89533585 79351 - protein coding gene nuclear receptor subfamily 1, group H, member 4
Tssr95177 10 89465403 to 89465407 4 + TSS region transcription start site region 95177
Tssr98873 10 89481011 to 89481016 5 - TSS region transcription start site region 98873
Tssr98874 10 89506631 to 89506650 19 - TSS region transcription start site region 98874
Tssr98875 10 89533529 to 89533541 12 - TSS region transcription start site region 98875
Tssr98876 10 89533550 to 89533590 40 - TSS region transcription start site region 98876
Tssr98877 10 89533591 to 89533635 44 - TSS region transcription start site region 98877
Tssr98878 10 89548228 to 89548251 23 - TSS region transcription start site region 98878
Gm48087 10 89555083 to 89555719 636 - pseudogene predicted gene, 48087
Slc17a8 10 89574020 to 89621249 47229 - protein coding gene solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
Tssr98879 10 89592926 to 89592952 26 - TSS region transcription start site region 98879
Tssr98880 10 89600692 to 89600719 27 - TSS region transcription start site region 98880
Tssr98881 10 89621219 to 89621237 18 - TSS region transcription start site region 98881
Tssr98882 10 89621263 to 89621275 12 - TSS region transcription start site region 98882
Tssr98883 10 89621279 to 89621290 11 - TSS region transcription start site region 98883
Tssr98884 10 89621429 to 89621464 35 - TSS region transcription start site region 98884
Tssr98885 10 89632008 to 89632019 11 - TSS region transcription start site region 98885
Scyl2 10 89638721 to 89686285 47564 - protein coding gene SCY1-like 2 (S. cerevisiae)
Tssr98886 10 89647023 to 89647035 12 - TSS region transcription start site region 98886
Tssr98887 10 89674190 to 89674195 5 - TSS region transcription start site region 98887
Cpgi2091 10 89685606 to 89686491 885 CpG island CpG island 2091
Tssr98888 10 89686197 to 89686214 17 - TSS region transcription start site region 98888
Tssr98889 10 89686219 to 89686244 25 - TSS region transcription start site region 98889
Tssr98890 10 89686250 to 89686306 56 - TSS region transcription start site region 98890
Tssr95178 10 89686365 to 89686421 56 + TSS region transcription start site region 95178
1500026H17Rik 10 89686371 to 89700866 14495 + bidirectional promoter lncRNA gene RIKEN cDNA 1500026H17 gene
Actr6 10 89711971 to 89732295 20324 - protein coding gene ARP6 actin-related protein 6
Cpgi2092 10 89731922 to 89732693 771 CpG island CpG island 2092
Tssr98891 10 89732253 to 89732324 71 - TSS region transcription start site region 98891
Gm30963 10 89736777 to 89741413 4636 - lncRNA gene predicted gene, 30963
Tssr98892 10 89741214 to 89741236 22 - TSS region transcription start site region 98892
E330037I15Rik 10 89743616 to 89745818 2202 unclassified gene RIKEN cDNA E330037I15 gene
Cpgi2093 10 89744811 to 89745868 1057 CpG island CpG island 2093
Tssr95179 10 89744988 to 89745022 34 + TSS region transcription start site region 95179
Uhrf1bp1l 10 89744991 to 89819871 74880 + protein coding gene UHRF1 (ICBP90) binding protein 1-like
Tssr98893 10 89745772 to 89745778 6 - TSS region transcription start site region 98893
Tssr98894 10 89745795 to 89745807 12 - TSS region transcription start site region 98894
Tssr98895 10 89745809 to 89745823 14 - TSS region transcription start site region 98895
Tssr95180 10 89750981 to 89750985 4 + TSS region transcription start site region 95180
Tssr95181 10 89781169 to 89781185 16 + TSS region transcription start site region 95181
Tssr95182 10 89785837 to 89785841 4 + TSS region transcription start site region 95182
Gm31090 10 89812159 to 89813893 1734 + lncRNA gene predicted gene, 31090
Gm26180 10 89821340 to 89821446 106 - snRNA gene predicted gene, 26180
Gm46238 10 89822878 to 89826535 3657 + protein coding gene predicted gene, 46238
Cpgi2094 10 89872550 to 89873886 1336 CpG island CpG island 2094
Tssr3313 10 89872922 to 89872943 21 + TSS region transcription start site region 3313
Tssr95183 10 89872959 to 89872973 14 + TSS region transcription start site region 95183
Tssr95184 10 89872977 to 89872998 21 + TSS region transcription start site region 95184
Tssr95185 10 89873008 to 89873058 50 + TSS region transcription start site region 95185
Tssr95186 10 89873241 to 89873252 11 + TSS region transcription start site region 95186
Tssr95187 10 89873482 to 89873492 10 + TSS region transcription start site region 95187
Tssr95188 10 89873497 to 89873516 19 + TSS region transcription start site region 95188
Anks1b 10 89873509 to 90973300 1099791 + protein coding gene ankyrin repeat and sterile alpha motif domain containing 1B
Gm4184 10 89878269 to 89878601 332 + protein coding gene predicted gene 4184
Tssr95189 10 89916373 to 89916385 12 + TSS region transcription start site region 95189
Cpgi2095 10 90049813 to 90050192 379 CpG island CpG island 2095
Tssr95190 10 90071011 to 90071015 4 + TSS region transcription start site region 95190
Tssr95191 10 90071095 to 90071117 22 + TSS region transcription start site region 95191
Tssr3314 10 90113328 to 90113332 4 + TSS region transcription start site region 3314
Gm5780 10 90132984 to 90134817 1833 - pseudogene predicted gene 5780
Cpgi2096 10 90135111 to 90135431 320 CpG island CpG island 2096
Tssr95192 10 90314752 to 90314756 4 + TSS region transcription start site region 95192
Tssr95193 10 90365198 to 90365238 40 + TSS region transcription start site region 95193
C230047L17Rik 10 90426587 to 90428054 1467 unclassified gene RIKEN cDNA C230047L17 gene
Gm22602 10 90450910 to 90451004 94 + snRNA gene predicted gene, 22602
D10Mit9 10 90467091 to 90467247 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 9
D10Mit313 10 90544911 to 90545032 121 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-313
Tssr95194 10 90576471 to 90576483 12 + TSS region transcription start site region 95194
Tssr95195 10 90576659 to 90576668 9 + TSS region transcription start site region 95195
Tssr95196 10 90576678 to 90576689 11 + TSS region transcription start site region 95196
Tssr95197 10 90576708 to 90576764 56 + TSS region transcription start site region 95197
Tssr95198 10 90576777 to 90576784 7 + TSS region transcription start site region 95198
Tssr95199 10 90576872 to 90576887 15 + TSS region transcription start site region 95199
Tssr3315 10 90577018 to 90577023 5 + TSS region transcription start site region 3315
Tssr98896 10 90587154 to 90587186 32 - TSS region transcription start site region 98896
2900018E21Rik 10 90597632 to 90599160 1528 unclassified gene RIKEN cDNA 2900018E21 gene
Tssr95200 10 90632068 to 90632071 3 + TSS region transcription start site region 95200
Ltpr5a 10 90671039 to 90671185 146 QTL Leishmania tropica response 5a
D10Mit67 10 90671039 to 90671185 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 67
D10Mit161 10 90697913 to 90698047 134 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 161
Gm47591 10 90728960 to 90736330 7370 + sense intronic lncRNA gene predicted gene, 47591
Tssr95201 10 90747670 to 90747672 2 + TSS region transcription start site region 95201