Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:88121752-88552034

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Parpbp 10 88091432 to 88146941 55509 - protein coding gene PARP1 binding protein
Gm6653 10 88134566 to 88135853 1287 - unclassified gene predicted gene 6653
Tssr98821 10 88135779 to 88135786 7 - TSS region transcription start site region 98821
Tssr98822 10 88135807 to 88135819 12 - TSS region transcription start site region 98822
Tssr98823 10 88135824 to 88135829 5 - TSS region transcription start site region 98823
Tssr98824 10 88135836 to 88135862 26 - TSS region transcription start site region 98824
Tssr95140 10 88135902 to 88135924 22 + TSS region transcription start site region 95140
4921515L22Rik 10 88135919 to 88137531 1612 + antisense lncRNA gene RIKEN cDNA 4921515L22 gene
Tssr95141 10 88135927 to 88135930 3 + TSS region transcription start site region 95141
Cpgi2077 10 88146557 to 88147352 795 CpG island CpG island 2077
Tssr98825 10 88146804 to 88146820 16 - TSS region transcription start site region 98825
Tssr98826 10 88146867 to 88146936 69 - TSS region transcription start site region 98826
Nup37 10 88146992 to 88178390 31398 + protein coding gene nucleoporin 37
Tssr95142 10 88146995 to 88147037 42 + TSS region transcription start site region 95142
Tssr95143 10 88147040 to 88147053 13 + TSS region transcription start site region 95143
Tssr95144 10 88147054 to 88147059 5 + TSS region transcription start site region 95144
Tssr95145 10 88147061 to 88147076 15 + TSS region transcription start site region 95145
Tssr95146 10 88162184 to 88162185 1 + TSS region transcription start site region 95146
Gm26357 10 88164959 to 88165073 114 - snRNA gene predicted gene, 26357
D10Mit94 10 88180636 to 88180785 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 94
Tssr95147 10 88201087 to 88201116 29 + TSS region transcription start site region 95147
Washc3 10 88201093 to 88246158 45065 + protein coding gene WASH complex subunit 3
Tssr95148 10 88201117 to 88201156 39 + TSS region transcription start site region 95148
Cpgi2078 10 88201124 to 88201320 196 CpG island CpG island 2078
Tssr95149 10 88201158 to 88201218 60 + TSS region transcription start site region 95149
Tssr95150 10 88201223 to 88201232 9 + TSS region transcription start site region 95150
Tssr95151 10 88204475 to 88204491 16 + TSS region transcription start site region 95151
Tssr3308 10 88224750 to 88224753 3 + TSS region transcription start site region 3308
Gm8415 10 88247418 to 88248635 1217 + pseudogene predicted gene 8415
Gm17980 10 88270883 to 88273231 2348 - pseudogene predicted gene, 17980
Gm48476 10 88309813 to 88310132 319 - pseudogene predicted gene, 48476
Dram1 10 88322801 to 88364383 41582 - protein coding gene DNA-damage regulated autophagy modulator 1
Tssr98827 10 88323130 to 88323151 21 - TSS region transcription start site region 98827
Tssr98828 10 88336164 to 88336189 25 - TSS region transcription start site region 98828
Cpgi2079 10 88336752 to 88337034 282 CpG island CpG island 2079
Tssr98829 10 88338627 to 88338630 3 - TSS region transcription start site region 98829
Tssr98830 10 88338668 to 88338681 13 - TSS region transcription start site region 98830
Tssr98831 10 88343936 to 88343977 41 - TSS region transcription start site region 98831
Tssr98832 10 88354421 to 88354427 6 - TSS region transcription start site region 98832
Cpgi2080 10 88356698 to 88357583 885 CpG island CpG island 2080
Tssr98833 10 88356970 to 88356985 15 - TSS region transcription start site region 98833
Tssr98834 10 88356990 to 88357122 132 - TSS region transcription start site region 98834
Tssr95152 10 88357184 to 88357204 20 + TSS region transcription start site region 95152
Gm40734 10 88357322 to 88371636 14314 + lncRNA gene predicted gene, 40734
Tssr98835 10 88357466 to 88357469 3 - TSS region transcription start site region 98835
Gm40733 10 88368052 to 88379133 11081 - lncRNA gene predicted gene, 40733
Cpgi2081 10 88378926 to 88379938 1012 CpG island CpG island 2081
Tssr98836 10 88379051 to 88379073 22 - TSS region transcription start site region 98836
Tssr95153 10 88379127 to 88379169 42 + TSS region transcription start site region 95153
Tssr95154 10 88379217 to 88379299 82 + TSS region transcription start site region 95154
Gnptab 10 88379232 to 88447330 68098 + protein coding gene N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
Gm26546 10 88379244 to 88383711 4467 - lincRNA gene predicted gene, 26546
Tssr98837 10 88380156 to 88380180 24 - TSS region transcription start site region 98837
Tssr95155 10 88414063 to 88414069 6 + TSS region transcription start site region 95155
B430006N09Rik 10 88415501 to 88415888 387 unclassified non-coding RNA gene RIKEN cDNA B430006N09 gene
Tssr95156 10 88433998 to 88434009 11 + TSS region transcription start site region 95156
Tssr95157 10 88437480 to 88437492 12 + TSS region transcription start site region 95157
Gm16235 10 88444236 to 88449887 5651 - antisense lncRNA gene predicted gene 16235
Cpgi2082 10 88459340 to 88460088 748 CpG island CpG island 2082
Sycp3 10 88459587 to 88473236 13649 + protein coding gene synaptonemal complex protein 3
Tssr3309 10 88459591 to 88459615 24 + TSS region transcription start site region 3309
Tssr3310 10 88459620 to 88459639 19 + TSS region transcription start site region 3310
Tssr95158 10 88459656 to 88459670 14 + TSS region transcription start site region 95158
Chpt1 10 88469513 to 88503970 34457 - protein coding gene choline phosphotransferase 1
Tssr98838 10 88471150 to 88471185 35 - TSS region transcription start site region 98838
Tssr98839 10 88479487 to 88479491 4 - TSS region transcription start site region 98839
Cpgi2083 10 88503267 to 88504376 1109 CpG island CpG island 2083
Tssr98840 10 88503859 to 88503899 40 - TSS region transcription start site region 98840
Tssr98841 10 88503912 to 88503923 11 - TSS region transcription start site region 98841
Tssr98842 10 88503928 to 88503950 22 - TSS region transcription start site region 98842
Tssr98843 10 88503952 to 88503973 21 - TSS region transcription start site region 98843
Tssr98844 10 88504159 to 88504167 8 - TSS region transcription start site region 98844
Mybpc1 10 88518279 to 88605152 86873 - protein coding gene myosin binding protein C, slow-type
Tssr98845 10 88537288 to 88537290 2 - TSS region transcription start site region 98845
D10Mit263 10 88547935 to 88548049 114 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 263