Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:88090269-89268023

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30233 10 88068073 to 88090347 22274 - lncRNA gene predicted gene, 30233
Tssr95139 10 88091070 to 88091076 6 + TSS region transcription start site region 95139
Pmch 10 88091072 to 88092374 1302 + protein coding gene pro-melanin-concentrating hormone
Parpbp 10 88091432 to 88146941 55509 - protein coding gene PARP1 binding protein
Gm6653 10 88134566 to 88135853 1287 - unclassified gene predicted gene 6653
Tssr98821 10 88135779 to 88135786 7 - TSS region transcription start site region 98821
Tssr98822 10 88135807 to 88135819 12 - TSS region transcription start site region 98822
Tssr98823 10 88135824 to 88135829 5 - TSS region transcription start site region 98823
Tssr98824 10 88135836 to 88135862 26 - TSS region transcription start site region 98824
Tssr95140 10 88135902 to 88135924 22 + TSS region transcription start site region 95140
4921515L22Rik 10 88135919 to 88137531 1612 + antisense lncRNA gene RIKEN cDNA 4921515L22 gene
Tssr95141 10 88135927 to 88135930 3 + TSS region transcription start site region 95141
Cpgi2077 10 88146557 to 88147352 795 CpG island CpG island 2077
Tssr98825 10 88146804 to 88146820 16 - TSS region transcription start site region 98825
Tssr98826 10 88146867 to 88146936 69 - TSS region transcription start site region 98826
Nup37 10 88146992 to 88178390 31398 + protein coding gene nucleoporin 37
Tssr95142 10 88146995 to 88147037 42 + TSS region transcription start site region 95142
Tssr95143 10 88147040 to 88147053 13 + TSS region transcription start site region 95143
Tssr95144 10 88147054 to 88147059 5 + TSS region transcription start site region 95144
Tssr95145 10 88147061 to 88147076 15 + TSS region transcription start site region 95145
Tssr95146 10 88162184 to 88162185 1 + TSS region transcription start site region 95146
Gm26357 10 88164959 to 88165073 114 - snRNA gene predicted gene, 26357
D10Mit94 10 88180636 to 88180785 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 94
Tssr95147 10 88201087 to 88201116 29 + TSS region transcription start site region 95147
Washc3 10 88201093 to 88246158 45065 + protein coding gene WASH complex subunit 3
Tssr95148 10 88201117 to 88201156 39 + TSS region transcription start site region 95148
Cpgi2078 10 88201124 to 88201320 196 CpG island CpG island 2078
Tssr95149 10 88201158 to 88201218 60 + TSS region transcription start site region 95149
Tssr95150 10 88201223 to 88201232 9 + TSS region transcription start site region 95150
Tssr95151 10 88204475 to 88204491 16 + TSS region transcription start site region 95151
Tssr3308 10 88224750 to 88224753 3 + TSS region transcription start site region 3308
Gm8415 10 88247418 to 88248635 1217 + pseudogene predicted gene 8415
Gm17980 10 88270883 to 88273231 2348 - pseudogene predicted gene, 17980
Gm48476 10 88309813 to 88310132 319 - pseudogene predicted gene, 48476
Dram1 10 88322801 to 88364383 41582 - protein coding gene DNA-damage regulated autophagy modulator 1
Tssr98827 10 88323130 to 88323151 21 - TSS region transcription start site region 98827
Tssr98828 10 88336164 to 88336189 25 - TSS region transcription start site region 98828
Cpgi2079 10 88336752 to 88337034 282 CpG island CpG island 2079
Tssr98829 10 88338627 to 88338630 3 - TSS region transcription start site region 98829
Tssr98830 10 88338668 to 88338681 13 - TSS region transcription start site region 98830
Tssr98831 10 88343936 to 88343977 41 - TSS region transcription start site region 98831
Tssr98832 10 88354421 to 88354427 6 - TSS region transcription start site region 98832
Cpgi2080 10 88356698 to 88357583 885 CpG island CpG island 2080
Tssr98833 10 88356970 to 88356985 15 - TSS region transcription start site region 98833
Tssr98834 10 88356990 to 88357122 132 - TSS region transcription start site region 98834
Tssr95152 10 88357184 to 88357204 20 + TSS region transcription start site region 95152
Gm40734 10 88357322 to 88371636 14314 + lncRNA gene predicted gene, 40734
Tssr98835 10 88357466 to 88357469 3 - TSS region transcription start site region 98835
Gm40733 10 88368052 to 88379133 11081 - lncRNA gene predicted gene, 40733
Cpgi2081 10 88378926 to 88379938 1012 CpG island CpG island 2081
Tssr98836 10 88379051 to 88379073 22 - TSS region transcription start site region 98836
Tssr95153 10 88379127 to 88379169 42 + TSS region transcription start site region 95153
Tssr95154 10 88379217 to 88379299 82 + TSS region transcription start site region 95154
Gnptab 10 88379232 to 88447330 68098 + protein coding gene N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
Gm26546 10 88379244 to 88383711 4467 - lincRNA gene predicted gene, 26546
Tssr98837 10 88380156 to 88380180 24 - TSS region transcription start site region 98837
Tssr95155 10 88414063 to 88414069 6 + TSS region transcription start site region 95155
B430006N09Rik 10 88415501 to 88415888 387 unclassified non-coding RNA gene RIKEN cDNA B430006N09 gene
Tssr95156 10 88433998 to 88434009 11 + TSS region transcription start site region 95156
Tssr95157 10 88437480 to 88437492 12 + TSS region transcription start site region 95157
Gm16235 10 88444236 to 88449887 5651 - antisense lncRNA gene predicted gene 16235
Cpgi2082 10 88459340 to 88460088 748 CpG island CpG island 2082
Sycp3 10 88459587 to 88473236 13649 + protein coding gene synaptonemal complex protein 3
Tssr3309 10 88459591 to 88459615 24 + TSS region transcription start site region 3309
Tssr3310 10 88459620 to 88459639 19 + TSS region transcription start site region 3310
Tssr95158 10 88459656 to 88459670 14 + TSS region transcription start site region 95158
Chpt1 10 88469513 to 88503970 34457 - protein coding gene choline phosphotransferase 1
Tssr98838 10 88471150 to 88471185 35 - TSS region transcription start site region 98838
Tssr98839 10 88479487 to 88479491 4 - TSS region transcription start site region 98839
Cpgi2083 10 88503267 to 88504376 1109 CpG island CpG island 2083
Tssr98840 10 88503859 to 88503899 40 - TSS region transcription start site region 98840
Tssr98841 10 88503912 to 88503923 11 - TSS region transcription start site region 98841
Tssr98842 10 88503928 to 88503950 22 - TSS region transcription start site region 98842
Tssr98843 10 88503952 to 88503973 21 - TSS region transcription start site region 98843
Tssr98844 10 88504159 to 88504167 8 - TSS region transcription start site region 98844
Mybpc1 10 88518279 to 88605152 86873 - protein coding gene myosin binding protein C, slow-type
Tssr98845 10 88537288 to 88537290 2 - TSS region transcription start site region 98845
D10Mit263 10 88547935 to 88548049 114 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 263
Cpgi2084 10 88560194 to 88560378 184 CpG island CpG island 2084
Tssr95159 10 88570584 to 88570603 19 + TSS region transcription start site region 95159
D10Mit209 10 88583386 to 88583534 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 209
Tssr98846 10 88583567 to 88583577 10 - TSS region transcription start site region 98846
Tssr98847 10 88583752 to 88583763 11 - TSS region transcription start site region 98847
Gm48752 10 88602472 to 88605340 2868 + unclassified gene predicted gene, 48752
Tssr98848 10 88605017 to 88605033 16 - TSS region transcription start site region 98848
Tssr3311 10 88605134 to 88605154 20 - TSS region transcription start site region 3311
Tssr95160 10 88605146 to 88605151 5 + TSS region transcription start site region 95160
Gm8435 10 88641379 to 88642170 791 + pseudogene predicted gene 8435
Gm48106 10 88650106 to 88658230 8124 - pseudogene predicted gene, 48106
Gm48108 10 88670495 to 88671269 774 - pseudogene predicted gene, 48108
Gm29807 10 88673022 to 88673393 371 + pseudogene predicted gene, 29807
Spic 10 88675269 to 88683023 7754 - protein coding gene Spi-C transcription factor (Spi-1/PU.1 related)
Tssr98849 10 88675759 to 88675768 9 - TSS region transcription start site region 98849
Tssr98850 10 88683021 to 88683025 4 - TSS region transcription start site region 98850
Tssr98851 10 88685029 to 88685034 5 - TSS region transcription start site region 98851
Gm46192 10 88704595 to 88705075 480 + pseudogene predicted gene, 46192
n-R5s79 10 88710008 to 88710127 119 - rRNA gene nuclear encoded rRNA 5S 79
Gm48144 10 88715650 to 88716094 444 - pseudogene predicted gene, 48144
Gm4925 10 88729541 to 88731101 1560 - pseudogene predicted gene 4925
Cpgi2085 10 88730534 to 88732252 1718 CpG island CpG island 2085
Tssr95161 10 88731056 to 88731073 17 + TSS region transcription start site region 95161
Tssr95162 10 88731093 to 88731106 13 + TSS region transcription start site region 95162
Tssr95163 10 88731352 to 88731400 48 + TSS region transcription start site region 95163
Tssr95164 10 88731404 to 88731423 19 + TSS region transcription start site region 95164
Arl1 10 88731414 to 88743202 11788 + protein coding gene ADP-ribosylation factor-like 1
Tssr95165 10 88731433 to 88731450 17 + TSS region transcription start site region 95165
Tssr95166 10 88732911 to 88732915 4 + TSS region transcription start site region 95166
Tssr95167 10 88739799 to 88739803 4 + TSS region transcription start site region 95167
Tssr95168 10 88740146 to 88740153 7 + TSS region transcription start site region 95168
Tssr3312 10 88740172 to 88740180 8 + TSS region transcription start site region 3312
Utp20 10 88746607 to 88826804 80197 - protein coding gene UTP20 small subunit processome component
Tssr98852 10 88751293 to 88751297 4 - TSS region transcription start site region 98852
Tssr98853 10 88765489 to 88765492 3 - TSS region transcription start site region 98853
Tssr98854 10 88765582 to 88765598 16 - TSS region transcription start site region 98854
Tssr98855 10 88788381 to 88788388 7 - TSS region transcription start site region 98855
Cpgi2086 10 88826382 to 88826916 534 CpG island CpG island 2086
Tssr98856 10 88826709 to 88826718 9 - TSS region transcription start site region 98856
Tssr98857 10 88826737 to 88826742 5 - TSS region transcription start site region 98857
Tssr98858 10 88826772 to 88826837 65 - TSS region transcription start site region 98858
Tssr95169 10 88826849 to 88826882 33 + TSS region transcription start site region 95169
9430024C03Rik 10 88874599 to 88875800 1201 unclassified gene RIKEN cDNA 9430024C03 gene
Cpgi2087 10 88885693 to 88886612 919 CpG island CpG island 2087
Tssr95170 10 88885903 to 88885917 14 + TSS region transcription start site region 95170
Tssr95171 10 88885932 to 88885942 10 + TSS region transcription start site region 95171
Slc5a8 10 88885992 to 88929515 43523 + protein coding gene solute carrier family 5 (iodide transporter), member 8
Tssr95172 10 88885995 to 88886010 15 + TSS region transcription start site region 95172
Tssr95173 10 88886015 to 88886031 16 + TSS region transcription start site region 95173
Ano4 10 88948994 to 89344762 395768 - protein coding gene anoctamin 4
Cpgi2088 10 88949532 to 88949709 177 CpG island CpG island 2088
Gm30769 10 89257132 to 89259142 2010 + lncRNA gene predicted gene, 30769
Tssr98859 10 89257515 to 89257527 12 - TSS region transcription start site region 98859
Tssr98860 10 89257578 to 89257599 21 - TSS region transcription start site region 98860
Tssr98861 10 89257645 to 89257657 12 - TSS region transcription start site region 98861
Tssr98862 10 89257675 to 89257694 19 - TSS region transcription start site region 98862
Tssr98863 10 89257696 to 89257712 16 - TSS region transcription start site region 98863
Tssr98864 10 89257806 to 89257831 25 - TSS region transcription start site region 98864