Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:86733045-87555589

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttc41 10 86705811 to 86776844 71033 + protein coding gene tetratricopeptide repeat domain 41
Gm49358 10 86763972 to 86833972 70000 + protein coding gene predicted gene, 49358
Cpgi2070 10 86778379 to 86779786 1407 CpG island CpG island 2070
Tssr98793 10 86778495 to 86778540 45 - TSS region transcription start site region 98793
Tssr95009 10 86779000 to 86779009 9 + TSS region transcription start site region 95009
Nt5dc3 10 86779005 to 86838389 59384 + protein coding gene 5'-nucleotidase domain containing 3
Tssr95010 10 86779019 to 86779044 25 + TSS region transcription start site region 95010
Tssr95011 10 86779046 to 86779068 22 + TSS region transcription start site region 95011
Tssr95012 10 86779075 to 86779095 20 + TSS region transcription start site region 95012
Tssr95013 10 86779097 to 86779104 7 + TSS region transcription start site region 95013
Gm16268 10 86839094 to 86874954 35860 + antisense lncRNA gene predicted gene 16268
Stab2 10 86841210 to 87007942 166732 - protein coding gene stabilin 2
Tssr95014 10 86874323 to 86874367 44 + TSS region transcription start site region 95014
Tssr98794 10 86885746 to 86885768 22 - TSS region transcription start site region 98794
Tssr98795 10 86885780 to 86885803 23 - TSS region transcription start site region 98795
Tssr98796 10 86885813 to 86885832 19 - TSS region transcription start site region 98796
Tssr98797 10 86885841 to 86885852 11 - TSS region transcription start site region 98797
Cpgi2071 10 86908656 to 86909199 543 CpG island CpG island 2071
Tssr95015 10 86908716 to 86908726 10 + TSS region transcription start site region 95015
Gm16280 10 86908761 to 86910013 1252 + antisense lncRNA gene predicted gene 16280
Gm16270 10 86909479 to 86912716 3237 + pseudogene predicted gene 16270
Gm16271 10 86972216 to 87028015 55799 + antisense lncRNA gene predicted gene 16271
Gm16269 10 87000297 to 87000705 408 + pseudogene predicted gene 16269
Tssr98798 10 87007922 to 87007950 28 - TSS region transcription start site region 98798
Tssr98799 10 87008015 to 87008031 16 - TSS region transcription start site region 98799
Gm36807 10 87018926 to 87058829 39903 - protein coding gene predicted gene, 36807
Tssr98800 10 87057904 to 87057913 9 - TSS region transcription start site region 98800
Tssr98801 10 87057915 to 87057934 19 - TSS region transcription start site region 98801
Tssr98802 10 87057937 to 87057947 10 - TSS region transcription start site region 98802
Tssr95016 10 87058043 to 87058067 24 + TSS region transcription start site region 95016
1700113H08Rik 10 87058045 to 87230589 172544 + protein coding gene RIKEN cDNA 1700113H08 gene
Cpgi2072 10 87058149 to 87058749 600 CpG island CpG island 2072
Tssr98803 10 87058321 to 87058349 28 - TSS region transcription start site region 98803
Tssr98804 10 87058364 to 87058374 10 - TSS region transcription start site region 98804
Tssr3306 10 87104858 to 87104860 2 + TSS region transcription start site region 3306
Tssr95017 10 87205952 to 87205999 47 + TSS region transcription start site region 95017
Tssr95018 10 87206004 to 87206009 5 + TSS region transcription start site region 95018
Tssr95019 10 87206011 to 87206037 26 + TSS region transcription start site region 95019
D10Mit301 10 87224349 to 87224597 248 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 301
4930555G07Rik 10 87230760 to 87297555 66795 + lincRNA gene RIKEN cDNA 4930555G07 gene
Gm10764 10 87289493 to 87291827 2334 + unclassified gene predicted gene 10764
Gm23191 10 87364040 to 87364146 106 - snRNA gene predicted gene, 23191
Tssr3307 10 87456136 to 87456161 25 + TSS region transcription start site region 3307
Cpgi2073 10 87486091 to 87486592 501 CpG island CpG island 2073
Ascl1 10 87491041 to 87493660 2619 - protein coding gene achaete-scute family bHLH transcription factor 1
Tssr98805 10 87491459 to 87491486 27 - TSS region transcription start site region 98805
Tssr98806 10 87491863 to 87491874 11 - TSS region transcription start site region 98806
Cpgi2074 10 87492237 to 87494169 1932 CpG island CpG island 2074
Tssr98807 10 87492482 to 87492493 11 - TSS region transcription start site region 98807
Tssr98808 10 87492759 to 87492771 12 - TSS region transcription start site region 98808
Tssr98809 10 87492796 to 87492834 38 - TSS region transcription start site region 98809
Tssr98810 10 87493651 to 87493666 15 - TSS region transcription start site region 98810
Cpgi2075 10 87494675 to 87494943 268 CpG island CpG island 2075
Gm29915 10 87502828 to 87508622 5794 - lncRNA gene predicted gene, 29915
Gm48120 10 87507862 to 87508485 623 + pseudogene predicted gene, 48120
Tssr95020 10 87518931 to 87518936 5 + TSS region transcription start site region 95020
Pah 10 87521795 to 87584136 62341 + protein coding gene phenylalanine hydroxylase
Tssr95021 10 87521893 to 87521917 24 + TSS region transcription start site region 95021
Tssr95022 10 87521920 to 87521937 17 + TSS region transcription start site region 95022
Tssr95023 10 87521954 to 87521977 23 + TSS region transcription start site region 95023
Tssr95024 10 87533366 to 87533391 25 + TSS region transcription start site region 95024
Tssr95025 10 87548978 to 87549005 27 + TSS region transcription start site region 95025
D10Mit118 10 87550455 to 87550595 140 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 118