Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:86377418-87087429

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syn3 10 86055125 to 86498896 443771 - protein coding gene synapsin III
Tssr98766 10 86491861 to 86491882 21 - TSS region transcription start site region 98766
Tssr98767 10 86491891 to 86491905 14 - TSS region transcription start site region 98767
Tssr94997 10 86498284 to 86498292 8 + TSS region transcription start site region 94997
Cpgi2065 10 86498607 to 86499038 431 CpG island CpG island 2065
Tssr98768 10 86498836 to 86498858 22 - TSS region transcription start site region 98768
Tssr98769 10 86498872 to 86498909 37 - TSS region transcription start site region 98769
Gm6729 10 86526297 to 86541867 15570 - protein coding gene predicted gene 6729
Gm9583 10 86550808 to 86552650 1842 - pseudogene predicted gene 9583
Gm21027 10 86554947 to 86556182 1235 - pseudogene predicted gene, 21027
Gm48448 10 86569933 to 86571682 1749 + pseudogene predicted gene, 48448
Gm48450 10 86571763 to 86572966 1203 + pseudogene predicted gene, 48450
Gm48451 10 86573044 to 86574247 1203 + pseudogene predicted gene, 48451
Gm48454 10 86574323 to 86575528 1205 + pseudogene predicted gene, 48454
Gm48460 10 86575624 to 86575849 225 + pseudogene predicted gene, 48460
Tssr98770 10 86591497 to 86591519 22 - TSS region transcription start site region 98770
Gm46191 10 86593156 to 86593588 432 + pseudogene predicted gene, 46191
Gm48461 10 86600917 to 86601442 525 + pseudogene predicted gene, 48461
Gm48463 10 86601568 to 86601745 177 + pseudogene predicted gene, 48463
Gm48464 10 86601781 to 86602927 1146 + pseudogene predicted gene, 48464
Gm48465 10 86603008 to 86604202 1194 + pseudogene predicted gene, 48465
Gm48466 10 86604292 to 86604763 471 + pseudogene predicted gene, 48466
Gm48473 10 86620651 to 86620927 276 - pseudogene predicted gene, 48473
Gm48474 10 86620975 to 86622133 1158 - pseudogene predicted gene, 48474
Gm48475 10 86622256 to 86623999 1743 - pseudogene predicted gene, 48475
Cpgi2066 10 86636884 to 86637121 237 CpG island CpG island 2066
Gm19989 10 86637383 to 86638393 1010 + pseudogene predicted gene, 19989
Gm18876 10 86640683 to 86642531 1848 + pseudogene predicted gene, 18876
Gm5174 10 86655958 to 86657380 1422 + protein coding gene predicted gene 5174
Gm48485 10 86657405 to 86671018 13613 + lincRNA gene predicted gene, 48485
Cpgi2067 10 86685373 to 86685860 487 CpG island CpG island 2067
1810014B01Rik 10 86685527 to 86689954 4427 + pseudogene RIKEN cDNA 1810014B01 gene
Tssr94998 10 86685572 to 86685623 51 + TSS region transcription start site region 94998
Hsp90b1 10 86690841 to 86705444 14603 - protein coding gene heat shock protein 90, beta (Grp94), member 1
Tssr94999 10 86691630 to 86691684 54 + TSS region transcription start site region 94999
Tssr98771 10 86691698 to 86691755 57 - TSS region transcription start site region 98771
Gm15344 10 86692119 to 86693095 976 - unclassified non-coding RNA gene predicted gene 15344
Tssr98772 10 86693406 to 86693428 22 - TSS region transcription start site region 98772
Tssr98773 10 86693450 to 86693461 11 - TSS region transcription start site region 98773
Tssr98774 10 86693478 to 86693509 31 - TSS region transcription start site region 98774
Tssr98775 10 86693951 to 86693971 20 - TSS region transcription start site region 98775
Tssr95000 10 86693952 to 86694004 52 + TSS region transcription start site region 95000
Tssr98776 10 86694009 to 86694024 15 - TSS region transcription start site region 98776
Tssr98777 10 86694097 to 86694125 28 - TSS region transcription start site region 98777
Tssr98778 10 86695516 to 86695545 29 - TSS region transcription start site region 98778
Tssr98779 10 86695713 to 86695743 30 - TSS region transcription start site region 98779
Tssr95001 10 86696789 to 86696808 19 + TSS region transcription start site region 95001
Tssr95002 10 86698327 to 86698369 42 + TSS region transcription start site region 95002
Tssr98780 10 86701762 to 86701783 21 - TSS region transcription start site region 98780
Tssr98781 10 86701802 to 86701818 16 - TSS region transcription start site region 98781
Tssr98782 10 86701826 to 86701862 36 - TSS region transcription start site region 98782
Tssr98783 10 86701952 to 86701973 21 - TSS region transcription start site region 98783
Tssr95003 10 86701955 to 86701986 31 + TSS region transcription start site region 95003
Tssr98784 10 86701977 to 86701995 18 - TSS region transcription start site region 98784
Tssr98785 10 86702230 to 86702241 11 - TSS region transcription start site region 98785
Tssr98786 10 86702943 to 86703024 81 - TSS region transcription start site region 98786
Tssr95004 10 86703544 to 86703574 30 + TSS region transcription start site region 95004
Tssr98787 10 86703560 to 86703607 47 - TSS region transcription start site region 98787
Tssr95005 10 86704281 to 86704300 19 + TSS region transcription start site region 95005
Tssr98788 10 86704327 to 86704353 26 - TSS region transcription start site region 98788
Cpgi2068 10 86704756 to 86706476 1720 CpG island CpG island 2068
Gm25745 10 86705316 to 86705448 132 - miRNA gene predicted gene, 25745
Tssr98789 10 86705387 to 86705398 11 - TSS region transcription start site region 98789
Tssr98790 10 86705453 to 86705471 18 - TSS region transcription start site region 98790
Tssr98791 10 86705485 to 86705492 7 - TSS region transcription start site region 98791
Ttc41 10 86705811 to 86776844 71033 + protein coding gene tetratricopeptide repeat domain 41
Tssr95006 10 86705856 to 86705878 22 + TSS region transcription start site region 95006
Tssr95007 10 86705883 to 86705892 9 + TSS region transcription start site region 95007
Cpgi2069 10 86730770 to 86731125 355 CpG island CpG island 2069
Tssr95008 10 86731753 to 86731756 3 + TSS region transcription start site region 95008
Fabp3-ps1 10 86731987 to 86732388 401 - pseudogene fatty acid binding protein 3, muscle and heart, pseudogene 1
Tssr98792 10 86732418 to 86732429 11 - TSS region transcription start site region 98792
Gm49358 10 86763972 to 86833972 70000 + protein coding gene predicted gene, 49358
Cpgi2070 10 86778379 to 86779786 1407 CpG island CpG island 2070
Tssr98793 10 86778495 to 86778540 45 - TSS region transcription start site region 98793
Tssr95009 10 86779000 to 86779009 9 + TSS region transcription start site region 95009
Nt5dc3 10 86779005 to 86838389 59384 + protein coding gene 5'-nucleotidase domain containing 3
Tssr95010 10 86779019 to 86779044 25 + TSS region transcription start site region 95010
Tssr95011 10 86779046 to 86779068 22 + TSS region transcription start site region 95011
Tssr95012 10 86779075 to 86779095 20 + TSS region transcription start site region 95012
Tssr95013 10 86779097 to 86779104 7 + TSS region transcription start site region 95013
Gm16268 10 86839094 to 86874954 35860 + antisense lncRNA gene predicted gene 16268
Stab2 10 86841210 to 87007942 166732 - protein coding gene stabilin 2
Tssr95014 10 86874323 to 86874367 44 + TSS region transcription start site region 95014
Tssr98794 10 86885746 to 86885768 22 - TSS region transcription start site region 98794
Tssr98795 10 86885780 to 86885803 23 - TSS region transcription start site region 98795
Tssr98796 10 86885813 to 86885832 19 - TSS region transcription start site region 98796
Tssr98797 10 86885841 to 86885852 11 - TSS region transcription start site region 98797
Cpgi2071 10 86908656 to 86909199 543 CpG island CpG island 2071
Tssr95015 10 86908716 to 86908726 10 + TSS region transcription start site region 95015
Gm16280 10 86908761 to 86910013 1252 + antisense lncRNA gene predicted gene 16280
Gm16270 10 86909479 to 86912716 3237 + pseudogene predicted gene 16270
Gm16271 10 86972216 to 87028015 55799 + antisense lncRNA gene predicted gene 16271
Gm16269 10 87000297 to 87000705 408 + pseudogene predicted gene 16269
Tssr98798 10 87007922 to 87007950 28 - TSS region transcription start site region 98798
Tssr98799 10 87008015 to 87008031 16 - TSS region transcription start site region 98799
Gm36807 10 87018926 to 87058829 39903 - protein coding gene predicted gene, 36807
Tssr98800 10 87057904 to 87057913 9 - TSS region transcription start site region 98800
Tssr98801 10 87057915 to 87057934 19 - TSS region transcription start site region 98801
Tssr98802 10 87057937 to 87057947 10 - TSS region transcription start site region 98802
Tssr95016 10 87058043 to 87058067 24 + TSS region transcription start site region 95016
1700113H08Rik 10 87058045 to 87230589 172544 + protein coding gene RIKEN cDNA 1700113H08 gene
Cpgi2072 10 87058149 to 87058749 600 CpG island CpG island 2072
Tssr98803 10 87058321 to 87058349 28 - TSS region transcription start site region 98803
Tssr98804 10 87058364 to 87058374 10 - TSS region transcription start site region 98804