Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:86113560-87293607

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syn3 10 86055125 to 86498896 443771 - protein coding gene synapsin III
4930486F22Rik 10 86095859 to 86113586 17727 + antisense lncRNA gene RIKEN cDNA 4930486F22 gene
Tssr98762 10 86123204 to 86123224 20 - TSS region transcription start site region 98762
Tssr98763 10 86123246 to 86123280 34 - TSS region transcription start site region 98763
Tssr94955 10 86123474 to 86123482 8 + TSS region transcription start site region 94955
Tssr94956 10 86124410 to 86124443 33 + TSS region transcription start site region 94956
Gm15990 10 86125827 to 86129854 4027 + antisense lncRNA gene predicted gene 15990
Tssr94957 10 86139184 to 86139205 21 + TSS region transcription start site region 94957
Gm35636 10 86156131 to 86189543 33412 + lncRNA gene predicted gene, 35636
Tssr98764 10 86186548 to 86186572 24 - TSS region transcription start site region 98764
Tssr94958 10 86186802 to 86186842 40 + TSS region transcription start site region 94958
D10Mit8 10 86226257 to 86226453 196 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 8
Tssr98765 10 86295053 to 86295064 11 - TSS region transcription start site region 98765
Cpgi2063 10 86296204 to 86296360 156 CpG island CpG island 2063
Cpgi2064 10 86299904 to 86301100 1196 CpG island CpG island 2064
Timp3 10 86300412 to 86349505 49093 + protein coding gene tissue inhibitor of metalloproteinase 3
Tssr94959 10 86300546 to 86300562 16 + TSS region transcription start site region 94959
Tssr3301 10 86300630 to 86300647 17 + TSS region transcription start site region 3301
Tssr3302 10 86300674 to 86300683 9 + TSS region transcription start site region 3302
Tssr94960 10 86301186 to 86301188 2 + TSS region transcription start site region 94960
Tssr94961 10 86309976 to 86309985 9 + TSS region transcription start site region 94961
Tssr94962 10 86310934 to 86310955 21 + TSS region transcription start site region 94962
Tssr94963 10 86311015 to 86311054 39 + TSS region transcription start site region 94963
Tssr94964 10 86311228 to 86311255 27 + TSS region transcription start site region 94964
Tssr94965 10 86311302 to 86311350 48 + TSS region transcription start site region 94965
Tssr94966 10 86323887 to 86323892 5 + TSS region transcription start site region 94966
B930095M22Rik 10 86327026 to 86331185 4159 unclassified gene RIKEN cDNA B930095M22 gene
Tssr94967 10 86331626 to 86331629 3 + TSS region transcription start site region 94967
Tssr94968 10 86331652 to 86331660 8 + TSS region transcription start site region 94968
Tssr94969 10 86338407 to 86338424 17 + TSS region transcription start site region 94969
Tssr94970 10 86343938 to 86343957 19 + TSS region transcription start site region 94970
Tssr94971 10 86344553 to 86344562 9 + TSS region transcription start site region 94971
Tssr94972 10 86344597 to 86344617 20 + TSS region transcription start site region 94972
Tssr94973 10 86344626 to 86344647 21 + TSS region transcription start site region 94973
Tssr94974 10 86345820 to 86345840 20 + TSS region transcription start site region 94974
Tssr94975 10 86345851 to 86345867 16 + TSS region transcription start site region 94975
Tssr94976 10 86345895 to 86345947 52 + TSS region transcription start site region 94976
Tssr94977 10 86346016 to 86346024 8 + TSS region transcription start site region 94977
Tssr94978 10 86346042 to 86346084 42 + TSS region transcription start site region 94978
Tssr94979 10 86346117 to 86346138 21 + TSS region transcription start site region 94979
Tssr94980 10 86346145 to 86346163 18 + TSS region transcription start site region 94980
Tssr94981 10 86346228 to 86346244 16 + TSS region transcription start site region 94981
Tssr94982 10 86346533 to 86346543 10 + TSS region transcription start site region 94982
Tssr3303 10 86346883 to 86346924 41 + TSS region transcription start site region 3303
Tssr94983 10 86347203 to 86347214 11 + TSS region transcription start site region 94983
Tssr3304 10 86347242 to 86347257 15 + TSS region transcription start site region 3304
Tssr94984 10 86347330 to 86347357 27 + TSS region transcription start site region 94984
Tssr94985 10 86347363 to 86347379 16 + TSS region transcription start site region 94985
Tssr94986 10 86347505 to 86347523 18 + TSS region transcription start site region 94986
Tssr94987 10 86347538 to 86347549 11 + TSS region transcription start site region 94987
Tssr94988 10 86347551 to 86347566 15 + TSS region transcription start site region 94988
Tssr94989 10 86347668 to 86347687 19 + TSS region transcription start site region 94989
Tssr94990 10 86347813 to 86347825 12 + TSS region transcription start site region 94990
Tssr94991 10 86348077 to 86348091 14 + TSS region transcription start site region 94991
Tssr94992 10 86348129 to 86348169 40 + TSS region transcription start site region 94992
Tssr94993 10 86348205 to 86348223 18 + TSS region transcription start site region 94993
Tssr94994 10 86348353 to 86348368 15 + TSS region transcription start site region 94994
Tssr3305 10 86348435 to 86348444 9 + TSS region transcription start site region 3305
Tssr94995 10 86348474 to 86348486 12 + TSS region transcription start site region 94995
Tssr94996 10 86348965 to 86349004 39 + TSS region transcription start site region 94996
Tssr98766 10 86491861 to 86491882 21 - TSS region transcription start site region 98766
Tssr98767 10 86491891 to 86491905 14 - TSS region transcription start site region 98767
Tssr94997 10 86498284 to 86498292 8 + TSS region transcription start site region 94997
Cpgi2065 10 86498607 to 86499038 431 CpG island CpG island 2065
Tssr98768 10 86498836 to 86498858 22 - TSS region transcription start site region 98768
Tssr98769 10 86498872 to 86498909 37 - TSS region transcription start site region 98769
Gm6729 10 86526297 to 86541867 15570 - protein coding gene predicted gene 6729
Gm9583 10 86550808 to 86552650 1842 - pseudogene predicted gene 9583
Gm21027 10 86554947 to 86556182 1235 - pseudogene predicted gene, 21027
Gm48448 10 86569933 to 86571682 1749 + pseudogene predicted gene, 48448
Gm48450 10 86571763 to 86572966 1203 + pseudogene predicted gene, 48450
Gm48451 10 86573044 to 86574247 1203 + pseudogene predicted gene, 48451
Gm48454 10 86574323 to 86575528 1205 + pseudogene predicted gene, 48454
Gm48460 10 86575624 to 86575849 225 + pseudogene predicted gene, 48460
Tssr98770 10 86591497 to 86591519 22 - TSS region transcription start site region 98770
Gm46191 10 86593156 to 86593588 432 + pseudogene predicted gene, 46191
Gm48461 10 86600917 to 86601442 525 + pseudogene predicted gene, 48461
Gm48463 10 86601568 to 86601745 177 + pseudogene predicted gene, 48463
Gm48464 10 86601781 to 86602927 1146 + pseudogene predicted gene, 48464
Gm48465 10 86603008 to 86604202 1194 + pseudogene predicted gene, 48465
Gm48466 10 86604292 to 86604763 471 + pseudogene predicted gene, 48466
Gm48473 10 86620651 to 86620927 276 - pseudogene predicted gene, 48473
Gm48474 10 86620975 to 86622133 1158 - pseudogene predicted gene, 48474
Gm48475 10 86622256 to 86623999 1743 - pseudogene predicted gene, 48475
Cpgi2066 10 86636884 to 86637121 237 CpG island CpG island 2066
Gm19989 10 86637383 to 86638393 1010 + pseudogene predicted gene, 19989
Gm18876 10 86640683 to 86642531 1848 + pseudogene predicted gene, 18876
Gm5174 10 86655958 to 86657380 1422 + protein coding gene predicted gene 5174
Gm48485 10 86657405 to 86671018 13613 + lincRNA gene predicted gene, 48485
Cpgi2067 10 86685373 to 86685860 487 CpG island CpG island 2067
1810014B01Rik 10 86685527 to 86689954 4427 + pseudogene RIKEN cDNA 1810014B01 gene
Tssr94998 10 86685572 to 86685623 51 + TSS region transcription start site region 94998
Hsp90b1 10 86690841 to 86705444 14603 - protein coding gene heat shock protein 90, beta (Grp94), member 1
Tssr94999 10 86691630 to 86691684 54 + TSS region transcription start site region 94999
Tssr98771 10 86691698 to 86691755 57 - TSS region transcription start site region 98771
Gm15344 10 86692119 to 86693095 976 - unclassified non-coding RNA gene predicted gene 15344
Tssr98772 10 86693406 to 86693428 22 - TSS region transcription start site region 98772
Tssr98773 10 86693450 to 86693461 11 - TSS region transcription start site region 98773
Tssr98774 10 86693478 to 86693509 31 - TSS region transcription start site region 98774
Tssr98775 10 86693951 to 86693971 20 - TSS region transcription start site region 98775
Tssr95000 10 86693952 to 86694004 52 + TSS region transcription start site region 95000
Tssr98776 10 86694009 to 86694024 15 - TSS region transcription start site region 98776
Tssr98777 10 86694097 to 86694125 28 - TSS region transcription start site region 98777
Tssr98778 10 86695516 to 86695545 29 - TSS region transcription start site region 98778
Tssr98779 10 86695713 to 86695743 30 - TSS region transcription start site region 98779
Tssr95001 10 86696789 to 86696808 19 + TSS region transcription start site region 95001
Tssr95002 10 86698327 to 86698369 42 + TSS region transcription start site region 95002
Tssr98780 10 86701762 to 86701783 21 - TSS region transcription start site region 98780
Tssr98781 10 86701802 to 86701818 16 - TSS region transcription start site region 98781
Tssr98782 10 86701826 to 86701862 36 - TSS region transcription start site region 98782
Tssr98783 10 86701952 to 86701973 21 - TSS region transcription start site region 98783
Tssr95003 10 86701955 to 86701986 31 + TSS region transcription start site region 95003
Tssr98784 10 86701977 to 86701995 18 - TSS region transcription start site region 98784
Tssr98785 10 86702230 to 86702241 11 - TSS region transcription start site region 98785
Tssr98786 10 86702943 to 86703024 81 - TSS region transcription start site region 98786
Tssr95004 10 86703544 to 86703574 30 + TSS region transcription start site region 95004
Tssr98787 10 86703560 to 86703607 47 - TSS region transcription start site region 98787
Tssr95005 10 86704281 to 86704300 19 + TSS region transcription start site region 95005
Tssr98788 10 86704327 to 86704353 26 - TSS region transcription start site region 98788
Cpgi2068 10 86704756 to 86706476 1720 CpG island CpG island 2068
Gm25745 10 86705316 to 86705448 132 - miRNA gene predicted gene, 25745
Tssr98789 10 86705387 to 86705398 11 - TSS region transcription start site region 98789
Tssr98790 10 86705453 to 86705471 18 - TSS region transcription start site region 98790
Tssr98791 10 86705485 to 86705492 7 - TSS region transcription start site region 98791
Ttc41 10 86705811 to 86776844 71033 + protein coding gene tetratricopeptide repeat domain 41
Tssr95006 10 86705856 to 86705878 22 + TSS region transcription start site region 95006
Tssr95007 10 86705883 to 86705892 9 + TSS region transcription start site region 95007
Cpgi2069 10 86730770 to 86731125 355 CpG island CpG island 2069
Tssr95008 10 86731753 to 86731756 3 + TSS region transcription start site region 95008
Fabp3-ps1 10 86731987 to 86732388 401 - pseudogene fatty acid binding protein 3, muscle and heart, pseudogene 1
Tssr98792 10 86732418 to 86732429 11 - TSS region transcription start site region 98792
Gm49358 10 86763972 to 86833972 70000 + protein coding gene predicted gene, 49358
Cpgi2070 10 86778379 to 86779786 1407 CpG island CpG island 2070
Tssr98793 10 86778495 to 86778540 45 - TSS region transcription start site region 98793
Tssr95009 10 86779000 to 86779009 9 + TSS region transcription start site region 95009
Nt5dc3 10 86779005 to 86838389 59384 + protein coding gene 5'-nucleotidase domain containing 3
Tssr95010 10 86779019 to 86779044 25 + TSS region transcription start site region 95010
Tssr95011 10 86779046 to 86779068 22 + TSS region transcription start site region 95011
Tssr95012 10 86779075 to 86779095 20 + TSS region transcription start site region 95012
Tssr95013 10 86779097 to 86779104 7 + TSS region transcription start site region 95013
Gm16268 10 86839094 to 86874954 35860 + antisense lncRNA gene predicted gene 16268
Stab2 10 86841210 to 87007942 166732 - protein coding gene stabilin 2
Tssr95014 10 86874323 to 86874367 44 + TSS region transcription start site region 95014
Tssr98794 10 86885746 to 86885768 22 - TSS region transcription start site region 98794
Tssr98795 10 86885780 to 86885803 23 - TSS region transcription start site region 98795
Tssr98796 10 86885813 to 86885832 19 - TSS region transcription start site region 98796
Tssr98797 10 86885841 to 86885852 11 - TSS region transcription start site region 98797
Cpgi2071 10 86908656 to 86909199 543 CpG island CpG island 2071
Tssr95015 10 86908716 to 86908726 10 + TSS region transcription start site region 95015
Gm16280 10 86908761 to 86910013 1252 + antisense lncRNA gene predicted gene 16280
Gm16270 10 86909479 to 86912716 3237 + pseudogene predicted gene 16270
Gm16271 10 86972216 to 87028015 55799 + antisense lncRNA gene predicted gene 16271
Gm16269 10 87000297 to 87000705 408 + pseudogene predicted gene 16269
Tssr98798 10 87007922 to 87007950 28 - TSS region transcription start site region 98798
Tssr98799 10 87008015 to 87008031 16 - TSS region transcription start site region 98799
Gm36807 10 87018926 to 87058829 39903 - protein coding gene predicted gene, 36807
Tssr98800 10 87057904 to 87057913 9 - TSS region transcription start site region 98800
Tssr98801 10 87057915 to 87057934 19 - TSS region transcription start site region 98801
Tssr98802 10 87057937 to 87057947 10 - TSS region transcription start site region 98802
Tssr95016 10 87058043 to 87058067 24 + TSS region transcription start site region 95016
1700113H08Rik 10 87058045 to 87230589 172544 + protein coding gene RIKEN cDNA 1700113H08 gene
Cpgi2072 10 87058149 to 87058749 600 CpG island CpG island 2072
Tssr98803 10 87058321 to 87058349 28 - TSS region transcription start site region 98803
Tssr98804 10 87058364 to 87058374 10 - TSS region transcription start site region 98804
Tssr3306 10 87104858 to 87104860 2 + TSS region transcription start site region 3306
Tssr95017 10 87205952 to 87205999 47 + TSS region transcription start site region 95017
Tssr95018 10 87206004 to 87206009 5 + TSS region transcription start site region 95018
Tssr95019 10 87206011 to 87206037 26 + TSS region transcription start site region 95019
D10Mit301 10 87224349 to 87224597 248 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 301
4930555G07Rik 10 87230760 to 87297555 66795 + lincRNA gene RIKEN cDNA 4930555G07 gene
Gm10764 10 87289493 to 87291827 2334 + unclassified gene predicted gene 10764