Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:85264118-85974227

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38575 10 85220942 to 85266392 45450 - lncRNA gene predicted gene, 38575
Tssr98747 10 85266304 to 85266330 26 - TSS region transcription start site region 98747
Tssr98748 10 85266334 to 85266354 20 - TSS region transcription start site region 98748
Gm27392 10 85284233 to 85284333 100 - miRNA gene predicted gene, 27392
Gm8394 10 85313488 to 85314439 951 + pseudogene predicted gene 8394
Gm34712 10 85332687 to 85347566 14879 - lncRNA gene predicted gene, 34712
Gm25281 10 85333901 to 85334004 103 + miRNA gene predicted gene, 25281
Gm40730 10 85339013 to 85339952 939 + lncRNA gene predicted gene, 40730
Cpgi2054 10 85386637 to 85388721 2084 CpG island CpG island 2054
Tssr94928 10 85386813 to 85386846 33 + TSS region transcription start site region 94928
Btbd11 10 85386814 to 85660292 273478 + protein coding gene BTB (POZ) domain containing 11
Tssr94929 10 85386848 to 85386860 12 + TSS region transcription start site region 94929
Tssr94930 10 85538583 to 85538627 44 + TSS region transcription start site region 94930
Tssr98749 10 85539511 to 85539524 13 - TSS region transcription start site region 98749
Tssr94931 10 85540164 to 85540202 38 + TSS region transcription start site region 94931
Tssr98750 10 85540441 to 85540447 6 - TSS region transcription start site region 98750
Tssr98751 10 85541603 to 85541616 13 - TSS region transcription start site region 98751
Gm40731 10 85578876 to 85583988 5112 - lncRNA gene predicted gene, 40731
Cpgi2055 10 85598200 to 85599057 857 CpG island CpG island 2055
Tssr94932 10 85598726 to 85598755 29 + TSS region transcription start site region 94932
D10Mit261 10 85619118 to 85619227 109 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 261
Cpgi2056 10 85624790 to 85625157 367 CpG island CpG island 2056
Gm47358 10 85707680 to 85712368 4688 + lincRNA gene predicted gene, 47358
Gm6713 10 85709327 to 85710772 1445 - protein coding gene predicted gene 6713
Gm6714 10 85726612 to 85728452 1840 - pseudogene predicted gene 6714
Gm21026 10 85730755 to 85732099 1344 - pseudogene predicted gene, 21026
D10Mit159 10 85734723 to 85734871 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 159
Gm40732 10 85739703 to 85740339 636 - lncRNA gene predicted gene, 40732
Gm47362 10 85744174 to 85745068 894 - pseudogene predicted gene, 47362
Gm47363 10 85745403 to 85745951 548 - pseudogene predicted gene, 47363
Gm47366 10 85764265 to 85765762 1497 - pseudogene predicted gene, 47366
Gm47365 10 85764586 to 85765762 1176 - pseudogene predicted gene, 47365
Gm47367 10 85765900 to 85767577 1677 - pseudogene predicted gene, 47367
Gm19612 10 85786456 to 85787437 981 + pseudogene predicted gene, 19612
Gm9466 10 85790241 to 85792084 1843 + pseudogene predicted gene 9466
Gm1559 10 85806213 to 85810887 4674 - lincRNA gene predicted gene 1559
Gm6721 10 85807809 to 85809253 1444 + pseudogene predicted gene 6721
Cpgi2057 10 85829215 to 85829835 620 CpG island CpG island 2057
Tssr94933 10 85829370 to 85829413 43 + TSS region transcription start site region 94933
Tssr94934 10 85829423 to 85829446 23 + TSS region transcription start site region 94934
Gm19624 10 85829742 to 85833315 3573 + pseudogene predicted gene, 19624
Gm47006 10 85849141 to 85850866 1725 + pseudogene predicted gene, 47006
Tssr94935 10 85871403 to 85871407 4 + TSS region transcription start site region 94935
Cpgi2058 10 85871727 to 85872470 743 CpG island CpG island 2058
Tssr94936 10 85871815 to 85871898 83 + TSS region transcription start site region 94936
Pwp1 10 85871831 to 85889103 17272 + protein coding gene PWP1 homolog, endonuclein
Tssr94937 10 85871904 to 85871919 15 + TSS region transcription start site region 94937
Prdm4 10 85891966 to 85917142 25176 - protein coding gene PR domain containing 4
Cpgi2059 10 85916320 to 85917351 1031 CpG island CpG island 2059
Tssr98752 10 85916902 to 85917006 104 - TSS region transcription start site region 98752
Tssr98753 10 85917069 to 85917099 30 - TSS region transcription start site region 98753
Tssr98754 10 85917162 to 85917191 29 - TSS region transcription start site region 98754
Tssr94938 10 85927400 to 85927408 8 + TSS region transcription start site region 94938
Tssr3300 10 85927978 to 85927981 3 + TSS region transcription start site region 3300
Cpgi2060 10 85928067 to 85928971 904 CpG island CpG island 2060
Ascl4 10 85928491 to 85929647 1156 + protein coding gene achaete-scute family bHLH transcription factor 4
Tssr94939 10 85929082 to 85929087 5 + TSS region transcription start site region 94939
D10Mit228 10 85929187 to 85929302 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 228
Rtcb 10 85938637 to 85957793 19156 - protein coding gene RNA 2',3'-cyclic phosphate and 5'-OH ligase
Gm48175 10 85954960 to 85955139 179 + pseudogene predicted gene, 48175
Cpgi2061 10 85957056 to 85957931 875 CpG island CpG island 2061
Tssr98755 10 85957735 to 85957761 26 - TSS region transcription start site region 98755
Tssr98756 10 85957775 to 85957818 43 - TSS region transcription start site region 98756
Bpifc 10 85959340 to 86011889 52549 - protein coding gene BPI fold containing family C
Cia29 10 118661448 to 85619118 -33042330 QTL collagen induced arthritis QTL 29