Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:85054000-88504009

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522 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sysbp1 10 10232521 to 87565233 77332712 QTL systolic blood pressure 1
Fhl4 10 85097019 to 85102495 5476 - protein coding gene four and a half LIM domains 4
Tssr98737 10 85099408 to 85099428 20 - TSS region transcription start site region 98737
Cpgi2051 10 85102118 to 85103748 1630 CpG island CpG island 2051
Tssr98738 10 85102425 to 85102434 9 - TSS region transcription start site region 98738
Tssr98739 10 85102441 to 85102471 30 - TSS region transcription start site region 98739
Tssr98740 10 85102487 to 85102549 62 - TSS region transcription start site region 98740
Tssr98741 10 85102552 to 85102565 13 - TSS region transcription start site region 98741
Tssr3298 10 85102588 to 85102607 19 + TSS region transcription start site region 3298
Tmem263 10 85102627 to 85117747 15120 + protein coding gene transmembrane protein 263
Tssr94923 10 85102697 to 85102719 22 + TSS region transcription start site region 94923
Tssr94924 10 85102737 to 85102748 11 + TSS region transcription start site region 94924
Tssr94925 10 85102758 to 85102833 75 + TSS region transcription start site region 94925
Tssr3299 10 85102842 to 85102847 5 + TSS region transcription start site region 3299
Tssr98742 10 85103657 to 85103664 7 - TSS region transcription start site region 98742
Tssr94926 10 85115986 to 85115994 8 + TSS region transcription start site region 94926
Mterf2 10 85119433 to 85128027 8594 - protein coding gene mitochondrial transcription termination factor 2
Cpgi2052 10 85127868 to 85128161 293 CpG island CpG island 2052
Tssr98743 10 85127977 to 85128035 58 - TSS region transcription start site region 98743
Cry1 10 85131700 to 85185054 53354 - protein coding gene cryptochrome 1 (photolyase-like)
Cpgi2053 10 85184014 to 85185712 1698 CpG island CpG island 2053
Tssr98744 10 85184663 to 85184688 25 - TSS region transcription start site region 98744
Tssr98745 10 85185003 to 85185069 66 - TSS region transcription start site region 98745
Tssr94927 10 85185136 to 85185161 25 + TSS region transcription start site region 94927
Tssr98746 10 85198426 to 85198440 14 - TSS region transcription start site region 98746
Gm38575 10 85220942 to 85266392 45450 - lncRNA gene predicted gene, 38575
Tssr98747 10 85266304 to 85266330 26 - TSS region transcription start site region 98747
Tssr98748 10 85266334 to 85266354 20 - TSS region transcription start site region 98748
Gm27392 10 85284233 to 85284333 100 - miRNA gene predicted gene, 27392
Gm8394 10 85313488 to 85314439 951 + pseudogene predicted gene 8394
Gm34712 10 85332687 to 85347566 14879 - lncRNA gene predicted gene, 34712
Gm25281 10 85333901 to 85334004 103 + miRNA gene predicted gene, 25281
Gm40730 10 85339013 to 85339952 939 + lncRNA gene predicted gene, 40730
Cpgi2054 10 85386637 to 85388721 2084 CpG island CpG island 2054
Tssr94928 10 85386813 to 85386846 33 + TSS region transcription start site region 94928
Btbd11 10 85386814 to 85660292 273478 + protein coding gene BTB (POZ) domain containing 11
Tssr94929 10 85386848 to 85386860 12 + TSS region transcription start site region 94929
Tssr94930 10 85538583 to 85538627 44 + TSS region transcription start site region 94930
Tssr98749 10 85539511 to 85539524 13 - TSS region transcription start site region 98749
Tssr94931 10 85540164 to 85540202 38 + TSS region transcription start site region 94931
Tssr98750 10 85540441 to 85540447 6 - TSS region transcription start site region 98750
Tssr98751 10 85541603 to 85541616 13 - TSS region transcription start site region 98751
Gm40731 10 85578876 to 85583988 5112 - lncRNA gene predicted gene, 40731
Cpgi2055 10 85598200 to 85599057 857 CpG island CpG island 2055
Tssr94932 10 85598726 to 85598755 29 + TSS region transcription start site region 94932
D10Mit261 10 85619118 to 85619227 109 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 261
Cpgi2056 10 85624790 to 85625157 367 CpG island CpG island 2056
Gm47358 10 85707680 to 85712368 4688 + lincRNA gene predicted gene, 47358
Gm6713 10 85709327 to 85710772 1445 - protein coding gene predicted gene 6713
Gm6714 10 85726612 to 85728452 1840 - pseudogene predicted gene 6714
Gm21026 10 85730755 to 85732099 1344 - pseudogene predicted gene, 21026
D10Mit159 10 85734723 to 85734871 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 159
Gm40732 10 85739703 to 85740339 636 - lncRNA gene predicted gene, 40732
Gm47362 10 85744174 to 85745068 894 - pseudogene predicted gene, 47362
Gm47363 10 85745403 to 85745951 548 - pseudogene predicted gene, 47363
Gm47366 10 85764265 to 85765762 1497 - pseudogene predicted gene, 47366
Gm47365 10 85764586 to 85765762 1176 - pseudogene predicted gene, 47365
Gm47367 10 85765900 to 85767577 1677 - pseudogene predicted gene, 47367
Gm19612 10 85786456 to 85787437 981 + pseudogene predicted gene, 19612
Gm9466 10 85790241 to 85792084 1843 + pseudogene predicted gene 9466
Gm1559 10 85806213 to 85810887 4674 - lincRNA gene predicted gene 1559
Gm6721 10 85807809 to 85809253 1444 + pseudogene predicted gene 6721
Cpgi2057 10 85829215 to 85829835 620 CpG island CpG island 2057
Tssr94933 10 85829370 to 85829413 43 + TSS region transcription start site region 94933
Tssr94934 10 85829423 to 85829446 23 + TSS region transcription start site region 94934
Gm19624 10 85829742 to 85833315 3573 + pseudogene predicted gene, 19624
Gm47006 10 85849141 to 85850866 1725 + pseudogene predicted gene, 47006
Tssr94935 10 85871403 to 85871407 4 + TSS region transcription start site region 94935
Cpgi2058 10 85871727 to 85872470 743 CpG island CpG island 2058
Tssr94936 10 85871815 to 85871898 83 + TSS region transcription start site region 94936
Pwp1 10 85871831 to 85889103 17272 + protein coding gene PWP1 homolog, endonuclein
Tssr94937 10 85871904 to 85871919 15 + TSS region transcription start site region 94937
Prdm4 10 85891966 to 85917142 25176 - protein coding gene PR domain containing 4
Cpgi2059 10 85916320 to 85917351 1031 CpG island CpG island 2059
Tssr98752 10 85916902 to 85917006 104 - TSS region transcription start site region 98752
Tssr98753 10 85917069 to 85917099 30 - TSS region transcription start site region 98753
Tssr98754 10 85917162 to 85917191 29 - TSS region transcription start site region 98754
Tssr94938 10 85927400 to 85927408 8 + TSS region transcription start site region 94938
Tssr3300 10 85927978 to 85927981 3 + TSS region transcription start site region 3300
Cpgi2060 10 85928067 to 85928971 904 CpG island CpG island 2060
Ascl4 10 85928491 to 85929647 1156 + protein coding gene achaete-scute family bHLH transcription factor 4
Tssr94939 10 85929082 to 85929087 5 + TSS region transcription start site region 94939
D10Mit228 10 85929187 to 85929302 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 228
Rtcb 10 85938637 to 85957793 19156 - protein coding gene RNA 2',3'-cyclic phosphate and 5'-OH ligase
Gm48175 10 85954960 to 85955139 179 + pseudogene predicted gene, 48175
Cpgi2061 10 85957056 to 85957931 875 CpG island CpG island 2061
Tssr98755 10 85957735 to 85957761 26 - TSS region transcription start site region 98755
Tssr98756 10 85957775 to 85957818 43 - TSS region transcription start site region 98756
Bpifc 10 85959340 to 86011889 52549 - protein coding gene BPI fold containing family C
Tssr98757 10 85993509 to 85993527 18 - TSS region transcription start site region 98757
Tssr98758 10 86011833 to 86011896 63 - TSS region transcription start site region 98758
A230060F14Rik 10 86020441 to 86022329 1888 - antisense lncRNA gene RIKEN cDNA A230060F14 gene
Cpgi2062 10 86021424 to 86022528 1104 CpG island CpG island 2062
Fbxo7 10 86021875 to 86048336 26461 + protein coding gene F-box protein 7
Tssr94940 10 86021881 to 86021954 73 + TSS region transcription start site region 94940
Tssr94941 10 86021961 to 86021991 30 + TSS region transcription start site region 94941
Tssr94942 10 86021993 to 86022015 22 + TSS region transcription start site region 94942
Tssr94943 10 86022018 to 86022027 9 + TSS region transcription start site region 94943
Tssr94944 10 86022103 to 86022128 25 + TSS region transcription start site region 94944
Tssr94945 10 86022208 to 86022253 45 + TSS region transcription start site region 94945
Tssr94946 10 86032819 to 86032829 10 + TSS region transcription start site region 94946
Tssr94947 10 86032962 to 86032976 14 + TSS region transcription start site region 94947
Tssr94948 10 86032994 to 86033006 12 + TSS region transcription start site region 94948
Tssr94949 10 86033022 to 86033030 8 + TSS region transcription start site region 94949
Tssr94950 10 86033038 to 86033043 5 + TSS region transcription start site region 94950
Tssr94951 10 86033057 to 86033068 11 + TSS region transcription start site region 94951
Gm24430 10 86038685 to 86038788 103 - snRNA gene predicted gene, 24430
Tssr94952 10 86039958 to 86040005 47 + TSS region transcription start site region 94952
Syn3 10 86055125 to 86498896 443771 - protein coding gene synapsin III
Tssr98759 10 86057618 to 86057631 13 - TSS region transcription start site region 98759
Tssr98760 10 86057635 to 86057648 13 - TSS region transcription start site region 98760
Tssr94953 10 86068190 to 86068201 11 + TSS region transcription start site region 94953
D10Mit93 10 86078455 to 86078590 135 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 93
Tssr94954 10 86095836 to 86095860 24 + TSS region transcription start site region 94954
4930486F22Rik 10 86095859 to 86113586 17727 + antisense lncRNA gene RIKEN cDNA 4930486F22 gene
Tssr98761 10 86102161 to 86102166 5 - TSS region transcription start site region 98761
Tssr98762 10 86123204 to 86123224 20 - TSS region transcription start site region 98762
Tssr98763 10 86123246 to 86123280 34 - TSS region transcription start site region 98763
Tssr94955 10 86123474 to 86123482 8 + TSS region transcription start site region 94955
Tssr94956 10 86124410 to 86124443 33 + TSS region transcription start site region 94956
Gm15990 10 86125827 to 86129854 4027 + antisense lncRNA gene predicted gene 15990
Tssr94957 10 86139184 to 86139205 21 + TSS region transcription start site region 94957
Gm35636 10 86156131 to 86189543 33412 + lncRNA gene predicted gene, 35636
Tssr98764 10 86186548 to 86186572 24 - TSS region transcription start site region 98764
Tssr94958 10 86186802 to 86186842 40 + TSS region transcription start site region 94958
D10Mit8 10 86226257 to 86226453 196 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 8
Tssr98765 10 86295053 to 86295064 11 - TSS region transcription start site region 98765
Cpgi2063 10 86296204 to 86296360 156 CpG island CpG island 2063
Cpgi2064 10 86299904 to 86301100 1196 CpG island CpG island 2064
Timp3 10 86300412 to 86349505 49093 + protein coding gene tissue inhibitor of metalloproteinase 3
Tssr94959 10 86300546 to 86300562 16 + TSS region transcription start site region 94959
Tssr3301 10 86300630 to 86300647 17 + TSS region transcription start site region 3301
Tssr3302 10 86300674 to 86300683 9 + TSS region transcription start site region 3302
Tssr94960 10 86301186 to 86301188 2 + TSS region transcription start site region 94960
Tssr94961 10 86309976 to 86309985 9 + TSS region transcription start site region 94961
Tssr94962 10 86310934 to 86310955 21 + TSS region transcription start site region 94962
Tssr94963 10 86311015 to 86311054 39 + TSS region transcription start site region 94963
Tssr94964 10 86311228 to 86311255 27 + TSS region transcription start site region 94964
Tssr94965 10 86311302 to 86311350 48 + TSS region transcription start site region 94965
Tssr94966 10 86323887 to 86323892 5 + TSS region transcription start site region 94966
B930095M22Rik 10 86327026 to 86331185 4159 unclassified gene RIKEN cDNA B930095M22 gene
Tssr94967 10 86331626 to 86331629 3 + TSS region transcription start site region 94967
Tssr94968 10 86331652 to 86331660 8 + TSS region transcription start site region 94968
Tssr94969 10 86338407 to 86338424 17 + TSS region transcription start site region 94969
Tssr94970 10 86343938 to 86343957 19 + TSS region transcription start site region 94970
Tssr94971 10 86344553 to 86344562 9 + TSS region transcription start site region 94971
Tssr94972 10 86344597 to 86344617 20 + TSS region transcription start site region 94972
Tssr94973 10 86344626 to 86344647 21 + TSS region transcription start site region 94973
Tssr94974 10 86345820 to 86345840 20 + TSS region transcription start site region 94974
Tssr94975 10 86345851 to 86345867 16 + TSS region transcription start site region 94975
Tssr94976 10 86345895 to 86345947 52 + TSS region transcription start site region 94976
Tssr94977 10 86346016 to 86346024 8 + TSS region transcription start site region 94977
Tssr94978 10 86346042 to 86346084 42 + TSS region transcription start site region 94978
Tssr94979 10 86346117 to 86346138 21 + TSS region transcription start site region 94979
Tssr94980 10 86346145 to 86346163 18 + TSS region transcription start site region 94980
Tssr94981 10 86346228 to 86346244 16 + TSS region transcription start site region 94981
Tssr94982 10 86346533 to 86346543 10 + TSS region transcription start site region 94982
Tssr3303 10 86346883 to 86346924 41 + TSS region transcription start site region 3303
Tssr94983 10 86347203 to 86347214 11 + TSS region transcription start site region 94983
Tssr3304 10 86347242 to 86347257 15 + TSS region transcription start site region 3304
Tssr94984 10 86347330 to 86347357 27 + TSS region transcription start site region 94984
Tssr94985 10 86347363 to 86347379 16 + TSS region transcription start site region 94985
Tssr94986 10 86347505 to 86347523 18 + TSS region transcription start site region 94986
Tssr94987 10 86347538 to 86347549 11 + TSS region transcription start site region 94987
Tssr94988 10 86347551 to 86347566 15 + TSS region transcription start site region 94988
Tssr94989 10 86347668 to 86347687 19 + TSS region transcription start site region 94989
Tssr94990 10 86347813 to 86347825 12 + TSS region transcription start site region 94990
Tssr94991 10 86348077 to 86348091 14 + TSS region transcription start site region 94991
Tssr94992 10 86348129 to 86348169 40 + TSS region transcription start site region 94992
Tssr94993 10 86348205 to 86348223 18 + TSS region transcription start site region 94993
Tssr94994 10 86348353 to 86348368 15 + TSS region transcription start site region 94994
Tssr3305 10 86348435 to 86348444 9 + TSS region transcription start site region 3305
Tssr94995 10 86348474 to 86348486 12 + TSS region transcription start site region 94995
Tssr94996 10 86348965 to 86349004 39 + TSS region transcription start site region 94996
Tssr98766 10 86491861 to 86491882 21 - TSS region transcription start site region 98766
Tssr98767 10 86491891 to 86491905 14 - TSS region transcription start site region 98767
Tssr94997 10 86498284 to 86498292 8 + TSS region transcription start site region 94997
Cpgi2065 10 86498607 to 86499038 431 CpG island CpG island 2065
Tssr98768 10 86498836 to 86498858 22 - TSS region transcription start site region 98768
Tssr98769 10 86498872 to 86498909 37 - TSS region transcription start site region 98769
Gm6729 10 86526297 to 86541867 15570 - protein coding gene predicted gene 6729
Gm9583 10 86550808 to 86552650 1842 - pseudogene predicted gene 9583
Gm21027 10 86554947 to 86556182 1235 - pseudogene predicted gene, 21027
Gm48448 10 86569933 to 86571682 1749 + pseudogene predicted gene, 48448
Gm48450 10 86571763 to 86572966 1203 + pseudogene predicted gene, 48450
Gm48451 10 86573044 to 86574247 1203 + pseudogene predicted gene, 48451
Gm48454 10 86574323 to 86575528 1205 + pseudogene predicted gene, 48454
Gm48460 10 86575624 to 86575849 225 + pseudogene predicted gene, 48460
Tssr98770 10 86591497 to 86591519 22 - TSS region transcription start site region 98770
Gm46191 10 86593156 to 86593588 432 + pseudogene predicted gene, 46191
Gm48461 10 86600917 to 86601442 525 + pseudogene predicted gene, 48461
Gm48463 10 86601568 to 86601745 177 + pseudogene predicted gene, 48463
Gm48464 10 86601781 to 86602927 1146 + pseudogene predicted gene, 48464
Gm48465 10 86603008 to 86604202 1194 + pseudogene predicted gene, 48465
Gm48466 10 86604292 to 86604763 471 + pseudogene predicted gene, 48466
Gm48473 10 86620651 to 86620927 276 - pseudogene predicted gene, 48473
Gm48474 10 86620975 to 86622133 1158 - pseudogene predicted gene, 48474
Gm48475 10 86622256 to 86623999 1743 - pseudogene predicted gene, 48475
Cpgi2066 10 86636884 to 86637121 237 CpG island CpG island 2066
Gm19989 10 86637383 to 86638393 1010 + pseudogene predicted gene, 19989