Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:84774511-86304524

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rfx4 10 84756062 to 84906538 150476 + protein coding gene regulatory factor X, 4 (influences HLA class II expression)
Tssr98735 10 84794742 to 84794753 11 - TSS region transcription start site region 98735
Gm40728 10 84797949 to 84863288 65339 - lncRNA gene predicted gene, 40728
Gm24226 10 84811087 to 84811183 96 - snRNA gene predicted gene, 24226
Tssr94914 10 84838103 to 84838134 31 + TSS region transcription start site region 94914
Tssr94915 10 84838143 to 84838153 10 + TSS region transcription start site region 94915
Tssr94916 10 84838160 to 84838174 14 + TSS region transcription start site region 94916
Tssr94917 10 84839067 to 84839068 1 + TSS region transcription start site region 94917
Cpgi2049 10 84844658 to 84844814 156 CpG island CpG island 2049
Cpgi2050 10 84917119 to 84918112 993 CpG island CpG island 2050
Tssr94918 10 84917269 to 84917295 26 + TSS region transcription start site region 94918
Tssr94919 10 84917556 to 84917594 38 + TSS region transcription start site region 94919
Ric8b 10 84917616 to 85018337 100721 + protein coding gene RIC8 guanine nucleotide exchange factor B
Tssr94920 10 84917619 to 84917655 36 + TSS region transcription start site region 94920
Tssr94921 10 84917657 to 84917692 35 + TSS region transcription start site region 94921
Tssr94922 10 84917703 to 84917716 13 + TSS region transcription start site region 94922
Gm34633 10 84987715 to 85003655 15940 - lncRNA gene predicted gene, 34633
Tssr98736 10 85003640 to 85003665 25 - TSS region transcription start site region 98736
Fhl4 10 85097019 to 85102495 5476 - protein coding gene four and a half LIM domains 4
Tssr98737 10 85099408 to 85099428 20 - TSS region transcription start site region 98737
Cpgi2051 10 85102118 to 85103748 1630 CpG island CpG island 2051
Tssr98738 10 85102425 to 85102434 9 - TSS region transcription start site region 98738
Tssr98739 10 85102441 to 85102471 30 - TSS region transcription start site region 98739
Tssr98740 10 85102487 to 85102549 62 - TSS region transcription start site region 98740
Tssr98741 10 85102552 to 85102565 13 - TSS region transcription start site region 98741
Tssr3298 10 85102588 to 85102607 19 + TSS region transcription start site region 3298
Tmem263 10 85102627 to 85117747 15120 + protein coding gene transmembrane protein 263
Tssr94923 10 85102697 to 85102719 22 + TSS region transcription start site region 94923
Tssr94924 10 85102737 to 85102748 11 + TSS region transcription start site region 94924
Tssr94925 10 85102758 to 85102833 75 + TSS region transcription start site region 94925
Tssr3299 10 85102842 to 85102847 5 + TSS region transcription start site region 3299
Tssr98742 10 85103657 to 85103664 7 - TSS region transcription start site region 98742
Tssr94926 10 85115986 to 85115994 8 + TSS region transcription start site region 94926
Mterf2 10 85119433 to 85128027 8594 - protein coding gene mitochondrial transcription termination factor 2
Cpgi2052 10 85127868 to 85128161 293 CpG island CpG island 2052
Tssr98743 10 85127977 to 85128035 58 - TSS region transcription start site region 98743
Cry1 10 85131700 to 85185054 53354 - protein coding gene cryptochrome 1 (photolyase-like)
Cpgi2053 10 85184014 to 85185712 1698 CpG island CpG island 2053
Tssr98744 10 85184663 to 85184688 25 - TSS region transcription start site region 98744
Tssr98745 10 85185003 to 85185069 66 - TSS region transcription start site region 98745
Tssr94927 10 85185136 to 85185161 25 + TSS region transcription start site region 94927
Tssr98746 10 85198426 to 85198440 14 - TSS region transcription start site region 98746
Gm38575 10 85220942 to 85266392 45450 - lncRNA gene predicted gene, 38575
Tssr98747 10 85266304 to 85266330 26 - TSS region transcription start site region 98747
Tssr98748 10 85266334 to 85266354 20 - TSS region transcription start site region 98748
Gm27392 10 85284233 to 85284333 100 - miRNA gene predicted gene, 27392
Gm8394 10 85313488 to 85314439 951 + pseudogene predicted gene 8394
Gm34712 10 85332687 to 85347566 14879 - lncRNA gene predicted gene, 34712
Gm25281 10 85333901 to 85334004 103 + miRNA gene predicted gene, 25281
Gm40730 10 85339013 to 85339952 939 + lncRNA gene predicted gene, 40730
Cpgi2054 10 85386637 to 85388721 2084 CpG island CpG island 2054
Tssr94928 10 85386813 to 85386846 33 + TSS region transcription start site region 94928
Btbd11 10 85386814 to 85660292 273478 + protein coding gene BTB (POZ) domain containing 11
Tssr94929 10 85386848 to 85386860 12 + TSS region transcription start site region 94929
Tssr94930 10 85538583 to 85538627 44 + TSS region transcription start site region 94930
Tssr98749 10 85539511 to 85539524 13 - TSS region transcription start site region 98749
Tssr94931 10 85540164 to 85540202 38 + TSS region transcription start site region 94931
Tssr98750 10 85540441 to 85540447 6 - TSS region transcription start site region 98750
Tssr98751 10 85541603 to 85541616 13 - TSS region transcription start site region 98751
Gm40731 10 85578876 to 85583988 5112 - lncRNA gene predicted gene, 40731
Cpgi2055 10 85598200 to 85599057 857 CpG island CpG island 2055
Tssr94932 10 85598726 to 85598755 29 + TSS region transcription start site region 94932
D10Mit261 10 85619118 to 85619227 109 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 261
Cpgi2056 10 85624790 to 85625157 367 CpG island CpG island 2056
Gm47358 10 85707680 to 85712368 4688 + lincRNA gene predicted gene, 47358
Gm6713 10 85709327 to 85710772 1445 - protein coding gene predicted gene 6713
Gm6714 10 85726612 to 85728452 1840 - pseudogene predicted gene 6714
Gm21026 10 85730755 to 85732099 1344 - pseudogene predicted gene, 21026
D10Mit159 10 85734723 to 85734871 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 159
Gm40732 10 85739703 to 85740339 636 - lncRNA gene predicted gene, 40732
Gm47362 10 85744174 to 85745068 894 - pseudogene predicted gene, 47362
Gm47363 10 85745403 to 85745951 548 - pseudogene predicted gene, 47363
Gm47366 10 85764265 to 85765762 1497 - pseudogene predicted gene, 47366
Gm47365 10 85764586 to 85765762 1176 - pseudogene predicted gene, 47365
Gm47367 10 85765900 to 85767577 1677 - pseudogene predicted gene, 47367
Gm19612 10 85786456 to 85787437 981 + pseudogene predicted gene, 19612
Gm9466 10 85790241 to 85792084 1843 + pseudogene predicted gene 9466
Gm1559 10 85806213 to 85810887 4674 - lincRNA gene predicted gene 1559
Gm6721 10 85807809 to 85809253 1444 + pseudogene predicted gene 6721
Cpgi2057 10 85829215 to 85829835 620 CpG island CpG island 2057
Tssr94933 10 85829370 to 85829413 43 + TSS region transcription start site region 94933
Tssr94934 10 85829423 to 85829446 23 + TSS region transcription start site region 94934
Gm19624 10 85829742 to 85833315 3573 + pseudogene predicted gene, 19624
Gm47006 10 85849141 to 85850866 1725 + pseudogene predicted gene, 47006
Tssr94935 10 85871403 to 85871407 4 + TSS region transcription start site region 94935
Cpgi2058 10 85871727 to 85872470 743 CpG island CpG island 2058
Tssr94936 10 85871815 to 85871898 83 + TSS region transcription start site region 94936
Pwp1 10 85871831 to 85889103 17272 + protein coding gene PWP1 homolog, endonuclein
Tssr94937 10 85871904 to 85871919 15 + TSS region transcription start site region 94937
Prdm4 10 85891966 to 85917142 25176 - protein coding gene PR domain containing 4
Cpgi2059 10 85916320 to 85917351 1031 CpG island CpG island 2059
Tssr98752 10 85916902 to 85917006 104 - TSS region transcription start site region 98752
Tssr98753 10 85917069 to 85917099 30 - TSS region transcription start site region 98753
Tssr98754 10 85917162 to 85917191 29 - TSS region transcription start site region 98754
Tssr94938 10 85927400 to 85927408 8 + TSS region transcription start site region 94938
Tssr3300 10 85927978 to 85927981 3 + TSS region transcription start site region 3300
Cpgi2060 10 85928067 to 85928971 904 CpG island CpG island 2060
Ascl4 10 85928491 to 85929647 1156 + protein coding gene achaete-scute family bHLH transcription factor 4
Tssr94939 10 85929082 to 85929087 5 + TSS region transcription start site region 94939
D10Mit228 10 85929187 to 85929302 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 228
Rtcb 10 85938637 to 85957793 19156 - protein coding gene RNA 2',3'-cyclic phosphate and 5'-OH ligase
Gm48175 10 85954960 to 85955139 179 + pseudogene predicted gene, 48175
Cpgi2061 10 85957056 to 85957931 875 CpG island CpG island 2061
Tssr98755 10 85957735 to 85957761 26 - TSS region transcription start site region 98755
Tssr98756 10 85957775 to 85957818 43 - TSS region transcription start site region 98756
Bpifc 10 85959340 to 86011889 52549 - protein coding gene BPI fold containing family C
Tssr98757 10 85993509 to 85993527 18 - TSS region transcription start site region 98757
Tssr98758 10 86011833 to 86011896 63 - TSS region transcription start site region 98758
A230060F14Rik 10 86020441 to 86022329 1888 - antisense lncRNA gene RIKEN cDNA A230060F14 gene
Cpgi2062 10 86021424 to 86022528 1104 CpG island CpG island 2062
Fbxo7 10 86021875 to 86048336 26461 + protein coding gene F-box protein 7
Tssr94940 10 86021881 to 86021954 73 + TSS region transcription start site region 94940
Tssr94941 10 86021961 to 86021991 30 + TSS region transcription start site region 94941
Tssr94942 10 86021993 to 86022015 22 + TSS region transcription start site region 94942
Tssr94943 10 86022018 to 86022027 9 + TSS region transcription start site region 94943
Tssr94944 10 86022103 to 86022128 25 + TSS region transcription start site region 94944
Tssr94945 10 86022208 to 86022253 45 + TSS region transcription start site region 94945
Tssr94946 10 86032819 to 86032829 10 + TSS region transcription start site region 94946
Tssr94947 10 86032962 to 86032976 14 + TSS region transcription start site region 94947
Tssr94948 10 86032994 to 86033006 12 + TSS region transcription start site region 94948
Tssr94949 10 86033022 to 86033030 8 + TSS region transcription start site region 94949
Tssr94950 10 86033038 to 86033043 5 + TSS region transcription start site region 94950
Tssr94951 10 86033057 to 86033068 11 + TSS region transcription start site region 94951
Gm24430 10 86038685 to 86038788 103 - snRNA gene predicted gene, 24430
Tssr94952 10 86039958 to 86040005 47 + TSS region transcription start site region 94952
Syn3 10 86055125 to 86498896 443771 - protein coding gene synapsin III
Tssr98759 10 86057618 to 86057631 13 - TSS region transcription start site region 98759
Tssr98760 10 86057635 to 86057648 13 - TSS region transcription start site region 98760
Tssr94953 10 86068190 to 86068201 11 + TSS region transcription start site region 94953
D10Mit93 10 86078455 to 86078590 135 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 93
Tssr94954 10 86095836 to 86095860 24 + TSS region transcription start site region 94954
4930486F22Rik 10 86095859 to 86113586 17727 + antisense lncRNA gene RIKEN cDNA 4930486F22 gene
Tssr98761 10 86102161 to 86102166 5 - TSS region transcription start site region 98761
Tssr98762 10 86123204 to 86123224 20 - TSS region transcription start site region 98762
Tssr98763 10 86123246 to 86123280 34 - TSS region transcription start site region 98763
Tssr94955 10 86123474 to 86123482 8 + TSS region transcription start site region 94955
Tssr94956 10 86124410 to 86124443 33 + TSS region transcription start site region 94956
Gm15990 10 86125827 to 86129854 4027 + antisense lncRNA gene predicted gene 15990
Tssr94957 10 86139184 to 86139205 21 + TSS region transcription start site region 94957
Gm35636 10 86156131 to 86189543 33412 + lncRNA gene predicted gene, 35636
Tssr98764 10 86186548 to 86186572 24 - TSS region transcription start site region 98764
Tssr94958 10 86186802 to 86186842 40 + TSS region transcription start site region 94958
D10Mit8 10 86226257 to 86226453 196 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 8
Tssr98765 10 86295053 to 86295064 11 - TSS region transcription start site region 98765
Cpgi2063 10 86296204 to 86296360 156 CpG island CpG island 2063
Cpgi2064 10 86299904 to 86301100 1196 CpG island CpG island 2064
Timp3 10 86300412 to 86349505 49093 + protein coding gene tissue inhibitor of metalloproteinase 3
Tssr94959 10 86300546 to 86300562 16 + TSS region transcription start site region 94959
Tssr3301 10 86300630 to 86300647 17 + TSS region transcription start site region 3301
Tssr3302 10 86300674 to 86300683 9 + TSS region transcription start site region 3302
Tssr94960 10 86301186 to 86301188 2 + TSS region transcription start site region 94960
Cia29 10 118661448 to 85619118 -33042330 QTL collagen induced arthritis QTL 29