Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:84528143-85148153

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ckap4 10 84526305 to 84533888 7583 - protein coding gene cytoskeleton-associated protein 4
Cpgi2042 10 84533106 to 84534675 1569 CpG island CpG island 2042
Tssr98728 10 84533884 to 84533896 12 - TSS region transcription start site region 98728
Tssr98729 10 84533901 to 84533913 12 - TSS region transcription start site region 98729
Tssr98730 10 84533939 to 84533950 11 - TSS region transcription start site region 98730
Tssr98731 10 84533968 to 84534029 61 - TSS region transcription start site region 98731
Tssr94892 10 84534176 to 84534215 39 + TSS region transcription start site region 94892
Platr7 10 84547417 to 84553338 5921 - lincRNA gene pluripotency associated transcript 7
Tssr94893 10 84550078 to 84550086 8 + TSS region transcription start site region 94893
Tssr98732 10 84551964 to 84551992 28 - TSS region transcription start site region 98732
Tssr98733 10 84554351 to 84554353 2 - TSS region transcription start site region 98733
Tssr94894 10 84554842 to 84554850 8 + TSS region transcription start site region 94894
Tssr3296 10 84556207 to 84556240 33 - TSS region transcription start site region 3296
Tssr94895 10 84556412 to 84556434 22 + TSS region transcription start site region 94895
Tssr94896 10 84556459 to 84556464 5 + TSS region transcription start site region 94896
Gm34515 10 84572321 to 84575068 2747 + lncRNA gene predicted gene, 34515
Tssr94897 10 84572531 to 84572548 17 + TSS region transcription start site region 94897
Tssr98734 10 84576144 to 84576155 11 - TSS region transcription start site region 98734
Cpgi2043 10 84576164 to 84577615 1451 CpG island CpG island 2043
Tssr94898 10 84576883 to 84576904 21 + TSS region transcription start site region 94898
Tcp11l2 10 84576947 to 84614355 37408 + protein coding gene t-complex 11 (mouse) like 2
Tssr94899 10 84584651 to 84584662 11 + TSS region transcription start site region 94899
Tssr94900 10 84584858 to 84584868 10 + TSS region transcription start site region 94900
Tssr3297 10 84599527 to 84599530 3 + TSS region transcription start site region 3297
Tssr94901 10 84608548 to 84608587 39 + TSS region transcription start site region 94901
Gm25657 10 84614719 to 84614813 94 + snRNA gene predicted gene, 25657
Gm17249 10 84618341 to 84622578 4237 - bidirectional promoter lncRNA gene predicted gene, 17249
Cpgi2044 10 84622204 to 84622801 597 CpG island CpG island 2044
Tssr94902 10 84622280 to 84622303 23 + TSS region transcription start site region 94902
Polr3b 10 84622293 to 84727178 104885 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide B
Tssr94903 10 84622312 to 84622360 48 + TSS region transcription start site region 94903
Tssr94904 10 84622365 to 84622410 45 + TSS region transcription start site region 94904
Tssr94905 10 84639745 to 84639769 24 + TSS region transcription start site region 94905
Tssr94906 10 84646606 to 84646655 49 + TSS region transcription start site region 94906
Tssr94907 10 84652600 to 84652601 1 + TSS region transcription start site region 94907
Tssr94908 10 84708182 to 84708187 5 + TSS region transcription start site region 94908
D10Dcr9 10 84729750 to 84729845 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 9
Cpgi2045 10 84754651 to 84756434 1783 CpG island CpG island 2045
Tssr94909 10 84756033 to 84756047 14 + TSS region transcription start site region 94909
Tssr94910 10 84756055 to 84756084 29 + TSS region transcription start site region 94910
Rfx4 10 84756062 to 84906538 150476 + protein coding gene regulatory factor X, 4 (influences HLA class II expression)
Tssr94911 10 84756150 to 84756164 14 + TSS region transcription start site region 94911
Tssr94912 10 84756186 to 84756197 11 + TSS region transcription start site region 94912
Cpgi2046 10 84756552 to 84757482 930 CpG island CpG island 2046
Cpgi2047 10 84758748 to 84759457 709 CpG island CpG island 2047
Cpgi2048 10 84759942 to 84760357 415 CpG island CpG island 2048
Tssr94913 10 84762212 to 84762246 34 + TSS region transcription start site region 94913
Tssr98735 10 84794742 to 84794753 11 - TSS region transcription start site region 98735
Gm40728 10 84797949 to 84863288 65339 - lncRNA gene predicted gene, 40728
Gm24226 10 84811087 to 84811183 96 - snRNA gene predicted gene, 24226
Tssr94914 10 84838103 to 84838134 31 + TSS region transcription start site region 94914
Tssr94915 10 84838143 to 84838153 10 + TSS region transcription start site region 94915
Tssr94916 10 84838160 to 84838174 14 + TSS region transcription start site region 94916
Tssr94917 10 84839067 to 84839068 1 + TSS region transcription start site region 94917
Cpgi2049 10 84844658 to 84844814 156 CpG island CpG island 2049
Cpgi2050 10 84917119 to 84918112 993 CpG island CpG island 2050
Tssr94918 10 84917269 to 84917295 26 + TSS region transcription start site region 94918
Tssr94919 10 84917556 to 84917594 38 + TSS region transcription start site region 94919
Ric8b 10 84917616 to 85018337 100721 + protein coding gene RIC8 guanine nucleotide exchange factor B
Tssr94920 10 84917619 to 84917655 36 + TSS region transcription start site region 94920
Tssr94921 10 84917657 to 84917692 35 + TSS region transcription start site region 94921
Tssr94922 10 84917703 to 84917716 13 + TSS region transcription start site region 94922
Gm34633 10 84987715 to 85003655 15940 - lncRNA gene predicted gene, 34633
Tssr98736 10 85003640 to 85003665 25 - TSS region transcription start site region 98736
Fhl4 10 85097019 to 85102495 5476 - protein coding gene four and a half LIM domains 4
Tssr98737 10 85099408 to 85099428 20 - TSS region transcription start site region 98737
Cpgi2051 10 85102118 to 85103748 1630 CpG island CpG island 2051
Tssr98738 10 85102425 to 85102434 9 - TSS region transcription start site region 98738
Tssr98739 10 85102441 to 85102471 30 - TSS region transcription start site region 98739
Tssr98740 10 85102487 to 85102549 62 - TSS region transcription start site region 98740
Tssr98741 10 85102552 to 85102565 13 - TSS region transcription start site region 98741
Tssr3298 10 85102588 to 85102607 19 + TSS region transcription start site region 3298
Tmem263 10 85102627 to 85117747 15120 + protein coding gene transmembrane protein 263
Tssr94923 10 85102697 to 85102719 22 + TSS region transcription start site region 94923
Tssr94924 10 85102737 to 85102748 11 + TSS region transcription start site region 94924
Tssr94925 10 85102758 to 85102833 75 + TSS region transcription start site region 94925
Tssr3299 10 85102842 to 85102847 5 + TSS region transcription start site region 3299
Tssr98742 10 85103657 to 85103664 7 - TSS region transcription start site region 98742
Tssr94926 10 85115986 to 85115994 8 + TSS region transcription start site region 94926
Mterf2 10 85119433 to 85128027 8594 - protein coding gene mitochondrial transcription termination factor 2
Cpgi2052 10 85127868 to 85128161 293 CpG island CpG island 2052
Tssr98743 10 85127977 to 85128035 58 - TSS region transcription start site region 98743
Cry1 10 85131700 to 85185054 53354 - protein coding gene cryptochrome 1 (photolyase-like)