Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:83851164-85302615

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scfpq1 10 12828307 to 84243920 71415613 QTL subcutaneous fat pad percentage QTL 1
Hrtq3 10 12828307 to 84243920 71415613 QTL heart weight QTL 3
Egq7 10 12828307 to 84243920 71415613 QTL early growth QTL 7
W3q11 10 12828307 to 84243920 71415613 QTL weight 3 weeks QTL 11
W10q5 10 12828307 to 84243920 71415613 QTL weight 10 weeks QTL 5
Lvrq4 10 12828307 to 84243920 71415613 QTL liver weight QTL 4
W6q6 10 12828307 to 84243920 71415613 QTL weight 6 weeks QTL 6
Kidpq2 10 12828307 to 84243920 71415613 QTL kidney weight percentage QTL 2
Gm47247 10 83901852 to 83902128 276 + pseudogene predicted gene, 47247
Gm33919 10 83926824 to 83930715 3891 + lncRNA gene predicted gene, 33919
Gm33980 10 83930768 to 83933525 2757 - lncRNA gene predicted gene, 33980
Gm34043 10 83936617 to 83963723 27106 - lncRNA gene predicted gene, 34043
Tssr94883 10 83971355 to 83971374 19 + TSS region transcription start site region 94883
Gm40725 10 83971609 to 83987199 15590 + lncRNA gene predicted gene, 40725
C230099D08Rik 10 83992728 to 84004860 12132 - lincRNA gene RIKEN cDNA C230099D08 gene
Gm40726 10 84028464 to 84031158 2694 + lncRNA gene predicted gene, 40726
Gm34184 10 84036560 to 84100697 64137 - lincRNA gene predicted gene, 34184
Gm37908 10 84061758 to 84062227 469 + unclassified gene predicted gene, 37908
Gm34113 10 84092266 to 84096249 3983 + lincRNA gene predicted gene, 34113
Gm40727 10 84104377 to 84110424 6047 - lncRNA gene predicted gene, 40727
Tssr94884 10 84110057 to 84110062 5 + TSS region transcription start site region 94884
D10Mit132b 10 84163020 to 84163351 331 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 132b
D10Mit132a 10 84163020 to 84163162 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 132a
Cpgi2039 10 84164908 to 84165147 239 CpG island CpG island 2039
Gm47253 10 84191820 to 84222057 30237 - lincRNA gene predicted gene, 47253
Tssr94885 10 84206659 to 84206660 1 + TSS region transcription start site region 94885
D10Mit65 10 84243786 to 84243920 134 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 65
Tssr3294 10 84293200 to 84293203 3 - TSS region transcription start site region 3294
D10Mit201 10 84304735 to 84304891 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 201
D10Mit131 10 84304762 to 84304904 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 131
D10Mit131.1 10 84304862 to 84305057 195 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 131.1
Tssr94886 10 84308824 to 84308843 19 + TSS region transcription start site region 94886
Tssr94887 10 84308847 to 84308858 11 + TSS region transcription start site region 94887
Gm5425 10 84308886 to 84309344 458 + pseudogene predicted gene 5425
Gm46201 10 84317320 to 84335749 18429 - lncRNA gene predicted gene, 46201
Cpgi2040 10 84347047 to 84347203 156 CpG island CpG island 2040
Nuak1 10 84370900 to 84440471 69571 - protein coding gene NUAK family, SNF1-like kinase, 1
Tssr98712 10 84398655 to 84398667 12 - TSS region transcription start site region 98712
Cpgi2041 10 84440015 to 84441576 1561 CpG island CpG island 2041
Tssr98713 10 84440505 to 84440517 12 - TSS region transcription start site region 98713
Tssr98714 10 84440536 to 84440547 11 - TSS region transcription start site region 98714
Tssr98715 10 84440591 to 84440604 13 - TSS region transcription start site region 98715
Tssr98716 10 84440610 to 84440619 9 - TSS region transcription start site region 98716
Tssr98717 10 84440623 to 84440630 7 - TSS region transcription start site region 98717
Tssr98718 10 84440639 to 84440650 11 - TSS region transcription start site region 98718
Tssr98719 10 84440651 to 84440658 7 - TSS region transcription start site region 98719
Tssr98720 10 84440659 to 84440675 16 - TSS region transcription start site region 98720
Tssr98721 10 84440685 to 84440705 20 - TSS region transcription start site region 98721
Gm47962 10 84440826 to 84467009 26183 + bidirectional promoter lncRNA gene predicted gene, 47962
Tssr94888 10 84440826 to 84440850 24 + TSS region transcription start site region 94888
Tssr98722 10 84441300 to 84441360 60 - TSS region transcription start site region 98722
D10Mit208 10 84464592 to 84464742 150 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 208
Tssr94889 10 84488290 to 84488296 6 + TSS region transcription start site region 94889
4930463O16Rik 10 84488293 to 84497435 9142 + lincRNA gene RIKEN cDNA 4930463O16 gene
1700092E16Rik 10 84498874 to 84499626 752 + unclassified non-coding RNA gene RIKEN cDNA 1700092E16 gene
Gm34405 10 84500044 to 84517102 17058 - lncRNA gene predicted gene, 34405
Gm18251 10 84502032 to 84502269 237 - pseudogene predicted gene, 18251
Tssr94890 10 84516710 to 84516715 5 + TSS region transcription start site region 94890
Tssr3295 10 84517771 to 84517787 16 + TSS region transcription start site region 3295
Tssr94891 10 84517987 to 84518005 18 + TSS region transcription start site region 94891
E230014E18Rik 10 84518045 to 84523270 5225 + lincRNA gene RIKEN cDNA E230014E18 gene
Ckap4 10 84526305 to 84533888 7583 - protein coding gene cytoskeleton-associated protein 4
Tssr98723 10 84526833 to 84526844 11 - TSS region transcription start site region 98723
Tssr98724 10 84526972 to 84526987 15 - TSS region transcription start site region 98724
Tssr98725 10 84527343 to 84527367 24 - TSS region transcription start site region 98725
Tssr98726 10 84527587 to 84527609 22 - TSS region transcription start site region 98726
Tssr98727 10 84527704 to 84527719 15 - TSS region transcription start site region 98727
Cpgi2042 10 84533106 to 84534675 1569 CpG island CpG island 2042
Tssr98728 10 84533884 to 84533896 12 - TSS region transcription start site region 98728
Tssr98729 10 84533901 to 84533913 12 - TSS region transcription start site region 98729
Tssr98730 10 84533939 to 84533950 11 - TSS region transcription start site region 98730
Tssr98731 10 84533968 to 84534029 61 - TSS region transcription start site region 98731
Tssr94892 10 84534176 to 84534215 39 + TSS region transcription start site region 94892
Platr7 10 84547417 to 84553338 5921 - lincRNA gene pluripotency associated transcript 7
Tssr94893 10 84550078 to 84550086 8 + TSS region transcription start site region 94893
Tssr98732 10 84551964 to 84551992 28 - TSS region transcription start site region 98732
Tssr98733 10 84554351 to 84554353 2 - TSS region transcription start site region 98733
Tssr94894 10 84554842 to 84554850 8 + TSS region transcription start site region 94894
Tssr3296 10 84556207 to 84556240 33 - TSS region transcription start site region 3296
Tssr94895 10 84556412 to 84556434 22 + TSS region transcription start site region 94895
Tssr94896 10 84556459 to 84556464 5 + TSS region transcription start site region 94896
Gm34515 10 84572321 to 84575068 2747 + lncRNA gene predicted gene, 34515
Tssr94897 10 84572531 to 84572548 17 + TSS region transcription start site region 94897
Tssr98734 10 84576144 to 84576155 11 - TSS region transcription start site region 98734
Cpgi2043 10 84576164 to 84577615 1451 CpG island CpG island 2043
Tssr94898 10 84576883 to 84576904 21 + TSS region transcription start site region 94898
Tcp11l2 10 84576947 to 84614355 37408 + protein coding gene t-complex 11 (mouse) like 2
Tssr94899 10 84584651 to 84584662 11 + TSS region transcription start site region 94899
Tssr94900 10 84584858 to 84584868 10 + TSS region transcription start site region 94900
Tssr3297 10 84599527 to 84599530 3 + TSS region transcription start site region 3297
Tssr94901 10 84608548 to 84608587 39 + TSS region transcription start site region 94901
Gm25657 10 84614719 to 84614813 94 + snRNA gene predicted gene, 25657
Gm17249 10 84618341 to 84622578 4237 - bidirectional promoter lncRNA gene predicted gene, 17249
Cpgi2044 10 84622204 to 84622801 597 CpG island CpG island 2044
Tssr94902 10 84622280 to 84622303 23 + TSS region transcription start site region 94902
Polr3b 10 84622293 to 84727178 104885 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide B
Tssr94903 10 84622312 to 84622360 48 + TSS region transcription start site region 94903
Tssr94904 10 84622365 to 84622410 45 + TSS region transcription start site region 94904
Tssr94905 10 84639745 to 84639769 24 + TSS region transcription start site region 94905
Tssr94906 10 84646606 to 84646655 49 + TSS region transcription start site region 94906
Tssr94907 10 84652600 to 84652601 1 + TSS region transcription start site region 94907
Tssr94908 10 84708182 to 84708187 5 + TSS region transcription start site region 94908
D10Dcr9 10 84729750 to 84729845 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 9
Cpgi2045 10 84754651 to 84756434 1783 CpG island CpG island 2045
Tssr94909 10 84756033 to 84756047 14 + TSS region transcription start site region 94909
Tssr94910 10 84756055 to 84756084 29 + TSS region transcription start site region 94910
Rfx4 10 84756062 to 84906538 150476 + protein coding gene regulatory factor X, 4 (influences HLA class II expression)
Tssr94911 10 84756150 to 84756164 14 + TSS region transcription start site region 94911
Tssr94912 10 84756186 to 84756197 11 + TSS region transcription start site region 94912
Cpgi2046 10 84756552 to 84757482 930 CpG island CpG island 2046
Cpgi2047 10 84758748 to 84759457 709 CpG island CpG island 2047
Cpgi2048 10 84759942 to 84760357 415 CpG island CpG island 2048
Tssr94913 10 84762212 to 84762246 34 + TSS region transcription start site region 94913
Tssr98735 10 84794742 to 84794753 11 - TSS region transcription start site region 98735
Gm40728 10 84797949 to 84863288 65339 - lncRNA gene predicted gene, 40728
Gm24226 10 84811087 to 84811183 96 - snRNA gene predicted gene, 24226
Tssr94914 10 84838103 to 84838134 31 + TSS region transcription start site region 94914
Tssr94915 10 84838143 to 84838153 10 + TSS region transcription start site region 94915
Tssr94916 10 84838160 to 84838174 14 + TSS region transcription start site region 94916
Tssr94917 10 84839067 to 84839068 1 + TSS region transcription start site region 94917
Cpgi2049 10 84844658 to 84844814 156 CpG island CpG island 2049
Cpgi2050 10 84917119 to 84918112 993 CpG island CpG island 2050
Tssr94918 10 84917269 to 84917295 26 + TSS region transcription start site region 94918
Tssr94919 10 84917556 to 84917594 38 + TSS region transcription start site region 94919
Ric8b 10 84917616 to 85018337 100721 + protein coding gene RIC8 guanine nucleotide exchange factor B
Tssr94920 10 84917619 to 84917655 36 + TSS region transcription start site region 94920
Tssr94921 10 84917657 to 84917692 35 + TSS region transcription start site region 94921
Tssr94922 10 84917703 to 84917716 13 + TSS region transcription start site region 94922
Gm34633 10 84987715 to 85003655 15940 - lncRNA gene predicted gene, 34633
Tssr98736 10 85003640 to 85003665 25 - TSS region transcription start site region 98736
Fhl4 10 85097019 to 85102495 5476 - protein coding gene four and a half LIM domains 4
Tssr98737 10 85099408 to 85099428 20 - TSS region transcription start site region 98737
Cpgi2051 10 85102118 to 85103748 1630 CpG island CpG island 2051
Tssr98738 10 85102425 to 85102434 9 - TSS region transcription start site region 98738
Tssr98739 10 85102441 to 85102471 30 - TSS region transcription start site region 98739
Tssr98740 10 85102487 to 85102549 62 - TSS region transcription start site region 98740
Tssr98741 10 85102552 to 85102565 13 - TSS region transcription start site region 98741
Tssr3298 10 85102588 to 85102607 19 + TSS region transcription start site region 3298
Tmem263 10 85102627 to 85117747 15120 + protein coding gene transmembrane protein 263
Tssr94923 10 85102697 to 85102719 22 + TSS region transcription start site region 94923
Tssr94924 10 85102737 to 85102748 11 + TSS region transcription start site region 94924
Tssr94925 10 85102758 to 85102833 75 + TSS region transcription start site region 94925
Tssr3299 10 85102842 to 85102847 5 + TSS region transcription start site region 3299
Tssr98742 10 85103657 to 85103664 7 - TSS region transcription start site region 98742
Tssr94926 10 85115986 to 85115994 8 + TSS region transcription start site region 94926
Mterf2 10 85119433 to 85128027 8594 - protein coding gene mitochondrial transcription termination factor 2
Cpgi2052 10 85127868 to 85128161 293 CpG island CpG island 2052
Tssr98743 10 85127977 to 85128035 58 - TSS region transcription start site region 98743
Cry1 10 85131700 to 85185054 53354 - protein coding gene cryptochrome 1 (photolyase-like)
Cpgi2053 10 85184014 to 85185712 1698 CpG island CpG island 2053
Tssr98744 10 85184663 to 85184688 25 - TSS region transcription start site region 98744
Tssr98745 10 85185003 to 85185069 66 - TSS region transcription start site region 98745
Tssr94927 10 85185136 to 85185161 25 + TSS region transcription start site region 94927
Tssr98746 10 85198426 to 85198440 14 - TSS region transcription start site region 98746
Gm38575 10 85220942 to 85266392 45450 - lncRNA gene predicted gene, 38575
Tssr98747 10 85266304 to 85266330 26 - TSS region transcription start site region 98747
Tssr98748 10 85266334 to 85266354 20 - TSS region transcription start site region 98748
Gm27392 10 85284233 to 85284333 100 - miRNA gene predicted gene, 27392
W6q8 10 122205623 to 84243786 -37961837 QTL weight 6 weeks QTL 8
Estoq3 10 122205623 to 84243786 -37961837 QTL embryo survival total QTL 3
Espq3 10 122205623 to 84243786 -37961837 QTL embryo survival preimplantation QTL 3
W10q8 10 122205623 to 84243786 -37961837 QTL weight 10 weeks QTL 8
Egq9 10 122205623 to 84243786 -37961837 QTL early growth QTL 9
Tesq3 10 122205623 to 84243786 -37961837 QTL testis weight QTL 3
Lgaq5 10 122205623 to 84243786 -37961837 QTL late growth adjusted QTL 5