Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:83537728-84459860

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Egq7 10 12828307 to 84243920 71415613 QTL early growth QTL 7
W3q11 10 12828307 to 84243920 71415613 QTL weight 3 weeks QTL 11
W10q5 10 12828307 to 84243920 71415613 QTL weight 10 weeks QTL 5
Scfpq1 10 12828307 to 84243920 71415613 QTL subcutaneous fat pad percentage QTL 1
W6q6 10 12828307 to 84243920 71415613 QTL weight 6 weeks QTL 6
Lvrq4 10 12828307 to 84243920 71415613 QTL liver weight QTL 4
Kidpq2 10 12828307 to 84243920 71415613 QTL kidney weight percentage QTL 2
Hrtq3 10 12828307 to 84243920 71415613 QTL heart weight QTL 3
Cpgi2034 10 83543510 to 83544506 996 CpG island CpG island 2034
Tssr98704 10 83543840 to 83543883 43 - TSS region transcription start site region 98704
Tssr94875 10 83543941 to 83544007 66 + TSS region transcription start site region 94875
Washc4 10 83543941 to 83596473 52532 + protein coding gene WASH complex subunit 4
Tssr94876 10 83544012 to 83544023 11 + TSS region transcription start site region 94876
Tssr94877 10 83562239 to 83562255 16 + TSS region transcription start site region 94877
Tssr94878 10 83565048 to 83565064 16 + TSS region transcription start site region 94878
Tssr94879 10 83590980 to 83591000 20 + TSS region transcription start site region 94879
Tssr94880 10 83597344 to 83597352 8 + TSS region transcription start site region 94880
Appl2 10 83600033 to 83648738 48705 - protein coding gene adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
Tssr98705 10 83624923 to 83624927 4 - TSS region transcription start site region 98705
Tssr98706 10 83636313 to 83636322 9 - TSS region transcription start site region 98706
Tssr98707 10 83636347 to 83636357 10 - TSS region transcription start site region 98707
Tssr98708 10 83637432 to 83637472 40 - TSS region transcription start site region 98708
Cpgi2035 10 83648239 to 83648969 730 CpG island CpG island 2035
Tssr98709 10 83648602 to 83648629 27 - TSS region transcription start site region 98709
Tssr98710 10 83648631 to 83648682 51 - TSS region transcription start site region 98710
Tssr98711 10 83648713 to 83648731 18 - TSS region transcription start site region 98711
Gm47244 10 83659271 to 83660617 1346 + pseudogene predicted gene, 47244
Cpgi2036 10 83707298 to 83707532 234 CpG island CpG island 2036
Cpgi2037 10 83722585 to 83723426 841 CpG island CpG island 2037
1500009L16Rik 10 83722865 to 83762762 39897 + protein coding gene RIKEN cDNA 1500009L16 gene
Tssr94881 10 83722881 to 83722947 66 + TSS region transcription start site region 94881
Tssr94882 10 83722948 to 83722969 21 + TSS region transcription start site region 94882
Gm47245 10 83810164 to 83811565 1401 - pseudogene predicted gene, 47245
Cpgi2038 10 83816245 to 83816831 586 CpG island CpG island 2038
D10Mit314 10 83818829 to 83818953 124 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-314
D10Mit300 10 83834311 to 83834432 121 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 300
Gm47247 10 83901852 to 83902128 276 + pseudogene predicted gene, 47247
Gm33919 10 83926824 to 83930715 3891 + lncRNA gene predicted gene, 33919
Gm33980 10 83930768 to 83933525 2757 - lncRNA gene predicted gene, 33980
Gm34043 10 83936617 to 83963723 27106 - lncRNA gene predicted gene, 34043
Tssr94883 10 83971355 to 83971374 19 + TSS region transcription start site region 94883
Gm40725 10 83971609 to 83987199 15590 + lncRNA gene predicted gene, 40725
C230099D08Rik 10 83992728 to 84004860 12132 - lincRNA gene RIKEN cDNA C230099D08 gene
Gm40726 10 84028464 to 84031158 2694 + lncRNA gene predicted gene, 40726
Gm34184 10 84036560 to 84100697 64137 - lincRNA gene predicted gene, 34184
Gm37908 10 84061758 to 84062227 469 + unclassified gene predicted gene, 37908
Gm34113 10 84092266 to 84096249 3983 + lincRNA gene predicted gene, 34113
Gm40727 10 84104377 to 84110424 6047 - lncRNA gene predicted gene, 40727
Tssr94884 10 84110057 to 84110062 5 + TSS region transcription start site region 94884
D10Mit132b 10 84163020 to 84163351 331 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 132b
D10Mit132a 10 84163020 to 84163162 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 132a
Cpgi2039 10 84164908 to 84165147 239 CpG island CpG island 2039
Gm47253 10 84191820 to 84222057 30237 - lincRNA gene predicted gene, 47253
Tssr94885 10 84206659 to 84206660 1 + TSS region transcription start site region 94885
D10Mit65 10 84243786 to 84243920 134 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 65
Tssr3294 10 84293200 to 84293203 3 - TSS region transcription start site region 3294
D10Mit201 10 84304735 to 84304891 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 201
D10Mit131 10 84304762 to 84304904 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 131
D10Mit131.1 10 84304862 to 84305057 195 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 131.1
Tssr94886 10 84308824 to 84308843 19 + TSS region transcription start site region 94886
Tssr94887 10 84308847 to 84308858 11 + TSS region transcription start site region 94887
Gm5425 10 84308886 to 84309344 458 + pseudogene predicted gene 5425
Gm46201 10 84317320 to 84335749 18429 - lncRNA gene predicted gene, 46201
Cpgi2040 10 84347047 to 84347203 156 CpG island CpG island 2040
Nuak1 10 84370900 to 84440471 69571 - protein coding gene NUAK family, SNF1-like kinase, 1
Tssr98712 10 84398655 to 84398667 12 - TSS region transcription start site region 98712
Cpgi2041 10 84440015 to 84441576 1561 CpG island CpG island 2041
Tssr98713 10 84440505 to 84440517 12 - TSS region transcription start site region 98713
Tssr98714 10 84440536 to 84440547 11 - TSS region transcription start site region 98714
Tssr98715 10 84440591 to 84440604 13 - TSS region transcription start site region 98715
Tssr98716 10 84440610 to 84440619 9 - TSS region transcription start site region 98716
Tssr98717 10 84440623 to 84440630 7 - TSS region transcription start site region 98717
Tssr98718 10 84440639 to 84440650 11 - TSS region transcription start site region 98718
Tssr98719 10 84440651 to 84440658 7 - TSS region transcription start site region 98719
Tssr98720 10 84440659 to 84440675 16 - TSS region transcription start site region 98720
Tssr98721 10 84440685 to 84440705 20 - TSS region transcription start site region 98721
Tssr94888 10 84440826 to 84440850 24 + TSS region transcription start site region 94888
Gm47962 10 84440826 to 84467009 26183 + bidirectional promoter lncRNA gene predicted gene, 47962
Tssr98722 10 84441300 to 84441360 60 - TSS region transcription start site region 98722
Lgaq5 10 122205623 to 84243786 -37961837 QTL late growth adjusted QTL 5
W6q8 10 122205623 to 84243786 -37961837 QTL weight 6 weeks QTL 8
Egq9 10 122205623 to 84243786 -37961837 QTL early growth QTL 9
W10q8 10 122205623 to 84243786 -37961837 QTL weight 10 weeks QTL 8
Tesq3 10 122205623 to 84243786 -37961837 QTL testis weight QTL 3
Estoq3 10 122205623 to 84243786 -37961837 QTL embryo survival total QTL 3
Espq3 10 122205623 to 84243786 -37961837 QTL embryo survival preimplantation QTL 3