Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:82701375-83271387

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hcfc2 10 82696160 to 82742428 46268 + protein coding gene host cell factor C2
Tssr94826 10 82707959 to 82707964 5 + TSS region transcription start site region 94826
Nfyb 10 82748701 to 82764144 15443 - protein coding gene nuclear transcription factor-Y beta
Cpgi2023 10 82763368 to 82764687 1319 CpG island CpG island 2023
Tssr98677 10 82763868 to 82763896 28 - TSS region transcription start site region 98677
Tssr98678 10 82763904 to 82763949 45 - TSS region transcription start site region 98678
Tssr98679 10 82763964 to 82763975 11 - TSS region transcription start site region 98679
Tssr98680 10 82764036 to 82764080 44 - TSS region transcription start site region 98680
Tssr98681 10 82764088 to 82764119 31 - TSS region transcription start site region 98681
Tssr98682 10 82764133 to 82764157 24 - TSS region transcription start site region 98682
Tssr94827 10 82764262 to 82764277 15 + TSS region transcription start site region 94827
Gm47560 10 82769744 to 82769905 161 - pseudogene predicted gene, 47560
Tssr98683 10 82771129 to 82771130 1 - TSS region transcription start site region 98683
Tssr94828 10 82771310 to 82771352 42 + TSS region transcription start site region 94828
Gm47561 10 82771321 to 82777781 6460 + lincRNA gene predicted gene, 47561
Tssr94829 10 82795168 to 82795198 30 + TSS region transcription start site region 94829
Tssr94830 10 82795924 to 82795954 30 + TSS region transcription start site region 94830
Cpgi2024 10 82811818 to 82812631 813 CpG island CpG island 2024
1700028I16Rik 10 82812123 to 82824242 12119 + lincRNA gene RIKEN cDNA 1700028I16 gene
Tssr94831 10 82812199 to 82812209 10 + TSS region transcription start site region 94831
Tssr98684 10 82814133 to 82814153 20 - TSS region transcription start site region 98684
Tssr94832 10 82833891 to 82833897 6 + TSS region transcription start site region 94832
Tssr94833 10 82833926 to 82833945 19 + TSS region transcription start site region 94833
Txnrd1 10 82833951 to 82897712 63761 + protein coding gene thioredoxin reductase 1
Tssr94834 10 82833955 to 82833965 10 + TSS region transcription start site region 94834
Tssr94835 10 82833966 to 82833975 9 + TSS region transcription start site region 94835
Gm38560 10 82845733 to 82859008 13275 - bidirectional promoter lncRNA gene predicted gene, 38560
Gm47073 10 82851255 to 82852647 1392 - unclassified gene predicted gene, 47073
Cpgi2025 10 82858907 to 82859583 676 CpG island CpG island 2025
Tssr98685 10 82859053 to 82859131 78 - TSS region transcription start site region 98685
Tssr94836 10 82859198 to 82859217 19 + TSS region transcription start site region 94836
Tssr94837 10 82859221 to 82859232 11 + TSS region transcription start site region 94837
Cpgi2026 10 82860214 to 82860936 722 CpG island CpG island 2026
Tssr94838 10 82860247 to 82860280 33 + TSS region transcription start site region 94838
Tssr94839 10 82860283 to 82860299 16 + TSS region transcription start site region 94839
Tssr94840 10 82860301 to 82860343 42 + TSS region transcription start site region 94840
Tssr94841 10 82860489 to 82860550 61 + TSS region transcription start site region 94841
Tssr94842 10 82866602 to 82866614 12 + TSS region transcription start site region 94842
Tssr94843 10 82866615 to 82866646 31 + TSS region transcription start site region 94843
Eid3 10 82866626 to 82867930 1304 + protein coding gene EP300 interacting inhibitor of differentiation 3
Tssr94844 10 82866648 to 82866674 26 + TSS region transcription start site region 94844
Cpgi2027 10 82866823 to 82867175 352 CpG island CpG island 2027
Tssr94845 10 82874654 to 82874685 31 + TSS region transcription start site region 94845
Tssr94846 10 82877315 to 82877338 23 + TSS region transcription start site region 94846
Tssr94847 10 82879262 to 82879275 13 + TSS region transcription start site region 94847
Tssr94848 10 82879807 to 82879838 31 + TSS region transcription start site region 94848
Tssr94849 10 82881748 to 82881781 33 + TSS region transcription start site region 94849
Tssr94850 10 82881800 to 82881828 28 + TSS region transcription start site region 94850
Tssr94851 10 82881839 to 82881854 15 + TSS region transcription start site region 94851
Tssr94852 10 82881858 to 82881874 16 + TSS region transcription start site region 94852
Tssr94853 10 82887655 to 82887668 13 + TSS region transcription start site region 94853
Tssr94854 10 82887697 to 82887713 16 + TSS region transcription start site region 94854
Tssr94855 10 82887722 to 82887731 9 + TSS region transcription start site region 94855
9130221J17Rik 10 82891381 to 82895015 3634 unclassified gene RIKEN cDNA 9130221J17 gene
Tssr94856 10 82896868 to 82896880 12 + TSS region transcription start site region 94856
Tssr94857 10 82896913 to 82896934 21 + TSS region transcription start site region 94857
Tssr94858 10 82897062 to 82897073 11 + TSS region transcription start site region 94858
Tssr94859 10 82897234 to 82897265 31 + TSS region transcription start site region 94859
Tssr94860 10 82897434 to 82897446 12 + TSS region transcription start site region 94860
Tssr94861 10 82897472 to 82897514 42 + TSS region transcription start site region 94861
Gm33781 10 82927003 to 82934640 7637 - lncRNA gene predicted gene, 33781
Cpgi2028 10 82954260 to 82954748 488 CpG island CpG island 2028
Gm4799 10 82954344 to 82955000 656 + pseudogene predicted gene 4799
Tssr94862 10 82954556 to 82954567 11 + TSS region transcription start site region 94862
Tssr98686 10 82955197 to 82955200 3 - TSS region transcription start site region 98686
Tssr98687 10 82955348 to 82955373 25 - TSS region transcription start site region 98687
Tssr94863 10 82958211 to 82958213 2 + TSS region transcription start site region 94863
Tssr98688 10 82958390 to 82958440 50 - TSS region transcription start site region 98688
Tssr98689 10 82961467 to 82961468 1 - TSS region transcription start site region 98689
Cpgi2029 10 82984773 to 82986481 1708 CpG island CpG island 2029
Tssr94864 10 82985345 to 82985381 36 + TSS region transcription start site region 94864
Tssr94865 10 82985384 to 82985436 52 + TSS region transcription start site region 94865
Tssr94866 10 82985443 to 82985454 11 + TSS region transcription start site region 94866
Tssr94867 10 82985473 to 82985504 31 + TSS region transcription start site region 94867
Chst11 10 82985498 to 83195900 210402 + protein coding gene carbohydrate sulfotransferase 11
Tssr3293 10 82986375 to 82986387 12 - TSS region transcription start site region 3293
Tssr94868 10 82987210 to 82987211 1 + TSS region transcription start site region 94868
Pwgrq19 10 82992866 to 92333194 9340328 QTL post-weaning growth rate QTL 19
Gm10773 10 83027761 to 83031695 3934 - protein coding gene predicted gene 10773
Tssr94869 10 83094627 to 83094628 1 + TSS region transcription start site region 94869
Tssr94870 10 83098087 to 83098090 3 + TSS region transcription start site region 94870
D10Mit227 10 83107360 to 83107473 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 227
1700025N21Rik 10 83139150 to 83142038 2888 - antisense lncRNA gene RIKEN cDNA 1700025N21 gene
Tssr98690 10 83153973 to 83153984 11 - TSS region transcription start site region 98690
Gm23122 10 83158025 to 83158127 102 - snRNA gene predicted gene, 23122
D10Mit160 10 83183489 to 83183618 129 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 160
Cpgi2030 10 83191195 to 83191731 536 CpG island CpG island 2030
Slc41a2 10 83230848 to 83337882 107034 - protein coding gene solute carrier family 41, member 2
Tssr98691 10 83239344 to 83239381 37 - TSS region transcription start site region 98691