Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:8162531-9412680

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30906 10 8176131 to 8193340 17209 + lincRNA gene predicted gene, 30906
Gm30959 10 8192735 to 8196684 3949 - lncRNA gene predicted gene, 30959
Ust 10 8204756 to 8518825 314069 - protein coding gene uronyl-2-sulfotransferase
Cpgi1283 10 8207397 to 8207582 185 CpG island CpG island 1283
4930573G07Rik 10 8212274 to 8233991 21717 + lncRNA gene RIKEN cDNA 4930573G07 gene
Cpgi1284 10 8214028 to 8214278 250 CpG island CpG island 1284
Tssr92332 10 8214263 to 8214274 11 + TSS region transcription start site region 92332
Gm31052 10 8246528 to 8258632 12104 + lncRNA gene predicted gene, 31052
Tssr96625 10 8290224 to 8290229 5 - TSS region transcription start site region 96625
Tssr96626 10 8358325 to 8358356 31 - TSS region transcription start site region 96626
D10Mit305 10 8359714 to 8359928 214 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-305
Tssr96627 10 8451822 to 8451826 4 - TSS region transcription start site region 96627
Tssr96628 10 8453019 to 8453048 29 - TSS region transcription start site region 96628
Tssr96629 10 8471816 to 8471822 6 - TSS region transcription start site region 96629
D10Mit76 10 8503628 to 8503826 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 76
Tssr96630 10 8511621 to 8511627 6 - TSS region transcription start site region 96630
Cpgi1285 10 8517541 to 8519201 1660 CpG island CpG island 1285
Tssr96631 10 8518475 to 8518491 16 - TSS region transcription start site region 96631
Tssr96632 10 8518782 to 8518800 18 - TSS region transcription start site region 96632
Tssr96633 10 8518801 to 8518851 50 - TSS region transcription start site region 96633
Gm40600 10 8545041 to 8547144 2103 - protein coding gene predicted gene, 40600
Gm24374 10 8642934 to 8643039 105 + snRNA gene predicted gene, 24374
Gm48654 10 8713241 to 8717073 3832 + lincRNA gene predicted gene, 48654
Tssr96634 10 8721916 to 8721922 6 - TSS region transcription start site region 96634
Sash1 10 8722219 to 8886070 163851 - protein coding gene SAM and SH3 domain containing 1
Tssr96635 10 8723528 to 8723542 14 - TSS region transcription start site region 96635
Tssr96636 10 8725094 to 8725119 25 - TSS region transcription start site region 96636
Tssr96637 10 8749132 to 8749164 32 - TSS region transcription start site region 96637
Tssr92333 10 8751900 to 8751903 3 + TSS region transcription start site region 92333
Tssr96638 10 8756757 to 8756768 11 - TSS region transcription start site region 96638
Tssr96639 10 8760602 to 8760626 24 - TSS region transcription start site region 96639
Tssr96640 10 8762219 to 8762259 40 - TSS region transcription start site region 96640
Tssr96641 10 8762269 to 8762283 14 - TSS region transcription start site region 96641
Tssr96642 10 8762288 to 8762314 26 - TSS region transcription start site region 96642
Tssr96643 10 8762349 to 8762370 21 - TSS region transcription start site region 96643
Tssr3133 10 8762385 to 8762396 11 - TSS region transcription start site region 3133
Tssr96644 10 8762451 to 8762466 15 - TSS region transcription start site region 96644
Tssr96645 10 8762579 to 8762616 37 - TSS region transcription start site region 96645
D10Mit298 10 8787531 to 8787680 149 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 298
Tssr96646 10 8814003 to 8814010 7 - TSS region transcription start site region 96646
Tssr96647 10 8814398 to 8814419 21 - TSS region transcription start site region 96647
Tssr96648 10 8814425 to 8814461 36 - TSS region transcription start site region 96648
Tssr96649 10 8819819 to 8819830 11 - TSS region transcription start site region 96649
Gm25410 10 8824011 to 8824147 136 - snoRNA gene predicted gene, 25410
Tssr96650 10 8829802 to 8829828 26 - TSS region transcription start site region 96650
Tssr96651 10 8839771 to 8839782 11 - TSS region transcription start site region 96651
Tssr96652 10 8852187 to 8852190 3 - TSS region transcription start site region 96652
4930553I21Rik 10 8860864 to 8861443 579 - unclassified gene RIKEN cDNA 4930553I21 gene
Tssr96653 10 8861442 to 8861446 4 - TSS region transcription start site region 96653
Tssr92334 10 8866595 to 8866603 8 + TSS region transcription start site region 92334
Tssr92335 10 8874219 to 8874240 21 + TSS region transcription start site region 92335
Tssr92336 10 8884062 to 8884098 36 + TSS region transcription start site region 92336
Gm26674 10 8884637 to 8886878 2241 + antisense lncRNA gene predicted gene, 26674
Cpgi1286 10 8885629 to 8886766 1137 CpG island CpG island 1286
Tssr96654 10 8885661 to 8885698 37 - TSS region transcription start site region 96654
Tssr96655 10 8885868 to 8885885 17 - TSS region transcription start site region 96655
Tssr96656 10 8885895 to 8885947 52 - TSS region transcription start site region 96656
Tssr96657 10 8886015 to 8886030 15 - TSS region transcription start site region 96657
Tssr96658 10 8886033 to 8886076 43 - TSS region transcription start site region 96658
Tssr96659 10 8886092 to 8886101 9 - TSS region transcription start site region 96659
Tssr96660 10 8886116 to 8886125 9 - TSS region transcription start site region 96660
Tssr96661 10 8886201 to 8886216 15 - TSS region transcription start site region 96661
Tssr96662 10 8886231 to 8886245 14 - TSS region transcription start site region 96662
Tssr96663 10 8886525 to 8886543 18 - TSS region transcription start site region 96663
Tssr96664 10 8886589 to 8886612 23 - TSS region transcription start site region 96664
Tssr92337 10 8903965 to 8903975 10 + TSS region transcription start site region 92337
Gm48727 10 8903981 to 8945137 41156 + lincRNA gene predicted gene, 48727
Tssr96665 10 8945235 to 8945269 34 - TSS region transcription start site region 96665
Tssr96666 10 8945281 to 8945294 13 - TSS region transcription start site region 96666
Gm48728 10 8951949 to 8967244 15295 + lincRNA gene predicted gene, 48728
D10Jpk2 10 9003216 to 9003360 144 DNA segment DNA segment, Chr 10, Japan, Kominami 2
Tssr96667 10 9027225 to 9027255 30 - TSS region transcription start site region 96667
Tssr96668 10 9027295 to 9027335 40 - TSS region transcription start site region 96668
D10Mit279 10 9048469 to 9048745 276 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 279
Gm48743 10 9069419 to 9071475 2056 - unclassified gene predicted gene, 48743
Tssr96669 10 9071150 to 9071154 4 - TSS region transcription start site region 96669
Gm48744 10 9223971 to 9224751 780 - unclassified gene predicted gene, 48744
9030613N10Rik 10 9298011 to 9300615 2604 unclassified gene RIKEN cDNA 9030613N10 gene
Gm48748 10 9329851 to 9336618 6767 - lincRNA gene predicted gene, 48748
Tssr92338 10 9336656 to 9336682 26 + TSS region transcription start site region 92338
Gm48749 10 9336682 to 9395259 58577 + lincRNA gene predicted gene, 48749
Gm48750 10 9356155 to 9356532 377 + pseudogene predicted gene, 48750
D10Mit306 10 9387648 to 9387869 221 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-306
D10Mit77 10 9396646 to 9396791 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 77
Obsty3 10 116355075 to 8359714 -107995361 QTL obesity 3