Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:81559851-83683228

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307 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Angvq1 10 46844307 to 82655287 35810980 QTL angiogenesis by VEGF QTL 1
Cia8 10 51617304 to 82655287 31037983 QTL collagen induced arthritis QTL 8
Obrq12 10 74151384 to 82655287 8503903 QTL obesity resistance QTL 12
jams1 10 79704491 to 82695872 2991381 heritable phenotypic marker juvenile audiogenic monogenic seizures 1
Cpgi1999 10 81559032 to 81560595 1563 CpG island CpG island 1999
Tle5 10 81559488 to 81566362 6874 + protein coding gene TLE family member 5, transcriptional modulator
Tssr94776 10 81561209 to 81561259 50 + TSS region transcription start site region 94776
Tssr94777 10 81563826 to 81563845 19 + TSS region transcription start site region 94777
Tssr94778 10 81564085 to 81564122 37 + TSS region transcription start site region 94778
Tssr94779 10 81564445 to 81564456 11 + TSS region transcription start site region 94779
Tssr94780 10 81564658 to 81564690 32 + TSS region transcription start site region 94780
Tssr94781 10 81565537 to 81565563 26 + TSS region transcription start site region 94781
Tssr94782 10 81565663 to 81565687 24 + TSS region transcription start site region 94782
Tssr94783 10 81565706 to 81565733 27 + TSS region transcription start site region 94783
Tssr98654 10 81565732 to 81565835 103 - TSS region transcription start site region 98654
Tssr94784 10 81565737 to 81565766 29 + TSS region transcription start site region 94784
Tssr94785 10 81565788 to 81565799 11 + TSS region transcription start site region 94785
Tssr94786 10 81565862 to 81565878 16 + TSS region transcription start site region 94786
Tssr94787 10 81565958 to 81565977 19 + TSS region transcription start site region 94787
Gm31936 10 81569046 to 81571795 2749 + lncRNA gene predicted gene, 31936
Cpgi2000 10 81570808 to 81571107 299 CpG island CpG island 2000
Cpgi2001 10 81571740 to 81571947 207 CpG island CpG island 2001
Gm15917 10 81572612 to 81575940 3328 - antisense lncRNA gene predicted gene 15917
Tle2 10 81574561 to 81590845 16284 + protein coding gene transducin-like enhancer of split 2
Tssr94788 10 81574699 to 81574738 39 + TSS region transcription start site region 94788
Cpgi2002 10 81575140 to 81575661 521 CpG island CpG island 2002
Tssr94789 10 81575235 to 81575254 19 + TSS region transcription start site region 94789
Tssr94790 10 81575257 to 81575269 12 + TSS region transcription start site region 94790
Tssr94791 10 81575277 to 81575301 24 + TSS region transcription start site region 94791
Tssr94792 10 81575306 to 81575327 21 + TSS region transcription start site region 94792
Tssr94793 10 81575545 to 81575557 12 + TSS region transcription start site region 94793
Cpgi2003 10 81580286 to 81580809 523 CpG island CpG island 2003
Cpgi2004 10 81587702 to 81587877 175 CpG island CpG island 2004
Tle6 10 81590904 to 81601073 10169 - protein coding gene transducin-like enhancer of split 6
Cpgi2005 10 81594141 to 81594438 297 CpG island CpG island 2005
Gm32024 10 81594509 to 81599098 4589 + lncRNA gene predicted gene, 32024
Tssr98655 10 81596487 to 81596491 4 - TSS region transcription start site region 98655
Tssr3289 10 81596699 to 81596714 15 - TSS region transcription start site region 3289
Tssr98656 10 81597330 to 81597367 37 - TSS region transcription start site region 98656
Tssr98657 10 81597601 to 81597629 28 - TSS region transcription start site region 98657
Cpgi2006 10 81600834 to 81601349 515 CpG island CpG island 2006
Tssr98658 10 81600863 to 81600881 18 - TSS region transcription start site region 98658
Cpgi2007 10 81604766 to 81605232 466 CpG island CpG island 2007
Cpgi2008 10 81605865 to 81606682 817 CpG island CpG island 2008
BC025920 10 81606308 to 81609836 3528 + protein coding gene cDNA sequence BC025920
Gm26896 10 81606368 to 81609791 3423 - lincRNA gene predicted gene, 26896
Tssr94794 10 81610148 to 81610159 11 + TSS region transcription start site region 94794
Tssr94795 10 81620535 to 81620541 6 + TSS region transcription start site region 94795
Tssr94796 10 81620547 to 81620558 11 + TSS region transcription start site region 94796
Tssr94797 10 81620590 to 81620597 7 + TSS region transcription start site region 94797
Tssr94798 10 81620609 to 81620634 25 + TSS region transcription start site region 94798
Tssr94799 10 81621078 to 81621091 13 + TSS region transcription start site region 94799
Sirt6 10 81621786 to 81627797 6011 - protein coding gene sirtuin 6
Tssr98659 10 81622247 to 81622251 4 - TSS region transcription start site region 98659
Cpgi2009 10 81627231 to 81627873 642 CpG island CpG island 2009
Tssr98660 10 81627516 to 81627527 11 - TSS region transcription start site region 98660
Tssr98661 10 81627534 to 81627586 52 - TSS region transcription start site region 98661
Tssr98662 10 81627592 to 81627607 15 - TSS region transcription start site region 98662
Tssr94800 10 81627691 to 81627742 51 + TSS region transcription start site region 94800
Ankrd24 10 81628540 to 81647610 19070 + protein coding gene ankyrin repeat domain 24
Tssr94801 10 81628546 to 81628567 21 + TSS region transcription start site region 94801
Tssr94802 10 81628570 to 81628601 31 + TSS region transcription start site region 94802
Tssr3290 10 81628682 to 81628689 7 + TSS region transcription start site region 3290
Tssr94803 10 81628702 to 81628719 17 + TSS region transcription start site region 94803
Cpgi2010 10 81633254 to 81633943 689 CpG island CpG island 2010
Tssr94804 10 81633694 to 81633710 16 + TSS region transcription start site region 94804
Cpgi2011 10 81642775 to 81644305 1530 CpG island CpG island 2011
Tssr94805 10 81643594 to 81643680 86 + TSS region transcription start site region 94805
Tssr98663 10 81643736 to 81643767 31 - TSS region transcription start site region 98663
Tssr94806 10 81643797 to 81643856 59 + TSS region transcription start site region 94806
Cpgi2012 10 81648863 to 81649056 193 CpG island CpG island 2012
Tssr94807 10 81649007 to 81649040 33 + TSS region transcription start site region 94807
Gm10778 10 81649069 to 81667361 18292 + protein coding gene predicted gene 10778
Tssr94808 10 81651651 to 81651652 1 + TSS region transcription start site region 94808
Gm47527 10 81679122 to 81680511 1389 + pseudogene predicted gene, 47527
Gm8112 10 81693721 to 81694185 464 - pseudogene predicted gene 8112
Zfp433 10 81704192 to 81723814 19622 + protein coding gene zinc finger protein 433
Gm8249 10 81715945 to 81716409 464 + pseudogene predicted gene 8249
Gm47529 10 81717039 to 81717557 518 - pseudogene predicted gene, 47529
Gm5173 10 81727923 to 81728872 949 + pseudogene predicted gene 5173
Gm3055 10 81744980 to 81751833 6853 - protein coding gene predicted gene 3055
Gm47537 10 81804432 to 81805701 1269 + pseudogene predicted gene, 47537
Gm4767 10 81811937 to 81823898 11961 + protein coding gene predicted gene 4767
Gm8264 10 81818476 to 81818940 464 - pseudogene predicted gene 8264
Gm8137 10 81852816 to 81853278 462 - pseudogene predicted gene 8137
Gm32687 10 81863934 to 81881081 17147 + protein coding gene predicted gene, 32687
Gm8274 10 81875058 to 81875520 462 + pseudogene predicted gene 8274
Gm47539 10 81876151 to 81876667 516 - pseudogene predicted gene, 47539
Gm8153 10 81887013 to 81887964 951 + pseudogene predicted gene 8153
Zfp781 10 81901911 to 81930480 28569 - protein coding gene zinc finger protein 781
Gm47546 10 81963798 to 81965087 1289 + pseudogene predicted gene, 47546
Gm19802 10 81978089 to 81995360 17271 + protein coding gene predicted gene, 19802
Gm8158 10 81985938 to 81986402 464 - pseudogene predicted gene 8158
Gm10777 10 81995971 to 82011636 15665 + lncRNA gene predicted gene 10777
Gm8290 10 82008379 to 82008855 476 + pseudogene predicted gene 8290
Gm46194 10 82009481 to 82009800 319 - pseudogene predicted gene, 46194
Gm33378 10 82014473 to 82017230 2757 + protein coding gene predicted gene, 33378
Gm8170 10 82020551 to 82021495 944 + pseudogene predicted gene 8170
AL117821 10 82044643 to 82048039 3396 unclassified gene expressed sequence AL117821
Gm46195 10 82046447 to 82048048 1601 - lncRNA gene predicted gene, 46195
Cpgi2013 10 82047983 to 82048501 518 CpG island CpG island 2013
Tssr94809 10 82048104 to 82048146 42 + TSS region transcription start site region 94809
Zfp873 10 82048123 to 82064745 16622 + protein coding gene zinc finger protein 873
Tssr94810 10 82048150 to 82048157 7 + TSS region transcription start site region 94810
Gm18556 10 82056108 to 82057101 993 - pseudogene predicted gene, 18556
D430050E20Rik 10 82083010 to 82083621 611 unclassified non-coding RNA gene RIKEN cDNA D430050E20 gene
Tssr94811 10 82083312 to 82083365 53 + TSS region transcription start site region 94811
Cpgi2014 10 82083337 to 82083582 245 CpG island CpG island 2014
BC024063 10 82083353 to 82111216 27863 + protein coding gene cDNA sequence BC024063
Tssr94812 10 82102185 to 82102194 9 + TSS region transcription start site region 94812
4921506L19Rik 10 82126675 to 82128286 1611 unclassified gene RIKEN cDNA 4921506L19 gene
Cpgi2015 10 82127826 to 82128401 575 CpG island CpG island 2015
Tssr94813 10 82127998 to 82128020 22 + TSS region transcription start site region 94813
AU041133 10 82128013 to 82153065 25052 + protein coding gene expressed sequence AU041133
Tssr94814 10 82128024 to 82128046 22 + TSS region transcription start site region 94814
Gm47572 10 82157101 to 82160461 3360 + unclassified gene predicted gene, 47572
Gm47573 10 82164247 to 82166784 2537 + unclassified gene predicted gene, 47573
Gm40720 10 82177630 to 82191292 13662 + lncRNA gene predicted gene, 40720
Cpgi2016 10 82178147 to 82178794 647 CpG island CpG island 2016
Tssr3291 10 82178325 to 82178345 20 + TSS region transcription start site region 3291
Gm15608 10 82194555 to 82201488 6933 + lincRNA gene predicted gene 15608
Gm3982 10 82219048 to 82224460 5412 + pseudogene predicted gene 3982
D10Ertd761e 10 82222278 to 82222498 220 DNA segment DNA segment, Chr 10, ERATO Doi 761, expressed
Zfp938 10 82224850 to 82241280 16430 - protein coding gene zinc finger protein 938
Cpgi2017 10 82240940 to 82241308 368 CpG island CpG island 2017
Tssr98664 10 82241271 to 82241290 19 - TSS region transcription start site region 98664
Tssr98665 10 82241293 to 82241304 11 - TSS region transcription start site region 98665
Gm47382 10 82266445 to 82266874 429 - pseudogene predicted gene, 47382
4932415D10Rik 10 82282116 to 82316582 34466 - protein coding gene RIKEN cDNA 4932415D10 gene
4933426I03Rik 10 82315374 to 82316558 1184 unclassified gene RIKEN cDNA 4933426I03 gene
Tssr98666 10 82316540 to 82316561 21 - TSS region transcription start site region 98666
Tssr98667 10 82354142 to 82354158 16 - TSS region transcription start site region 98667
Tssr98668 10 82354161 to 82354172 11 - TSS region transcription start site region 98668
Cpgi2018 10 82354208 to 82354673 465 CpG island CpG island 2018
Tssr94815 10 82354245 to 82354277 32 + TSS region transcription start site region 94815
Gm4924 10 82354255 to 82422882 68627 + protein coding gene predicted gene 4924
Tssr94816 10 82354278 to 82354296 18 + TSS region transcription start site region 94816
Gm8188 10 82430704 to 82432393 1689 + pseudogene predicted gene 8188
Gm47809 10 82442617 to 82442941 324 + pseudogene predicted gene, 47809
Gm1553 10 82486537 to 82492618 6081 - protein coding gene predicted gene 1553
Tssr98669 10 82492540 to 82492548 8 - TSS region transcription start site region 98669
Tssr98670 10 82492612 to 82492625 13 - TSS region transcription start site region 98670
Tssr98671 10 82492642 to 82492645 3 - TSS region transcription start site region 98671
Gm19186 10 82566772 to 82567507 735 + pseudogene predicted gene, 19186
Tssr94817 10 82569139 to 82569144 5 + TSS region transcription start site region 94817
Tssr3292 10 82578464 to 82578465 1 + TSS region transcription start site region 3292
Tssr94818 10 82585390 to 82585406 16 + TSS region transcription start site region 94818
Ap3m1-ps 10 82585426 to 82586683 1257 + pseudogene adaptor-related protein complex 3, mu 1 subunit, pseudogene
Gm40721 10 82613256 to 82618948 5692 - lncRNA gene predicted gene, 40721
1190007I07Rik 10 82619851 to 82623228 3377 - protein coding gene RIKEN cDNA 1190007I07 gene
Cpgi2019 10 82622739 to 82623460 721 CpG island CpG island 2019
Tssr98672 10 82623074 to 82623123 49 - TSS region transcription start site region 98672
Tssr98673 10 82623200 to 82623248 48 - TSS region transcription start site region 98673
Cpgi2020 10 82629392 to 82630400 1008 CpG island CpG island 2020
Tssr94819 10 82629803 to 82629818 15 + TSS region transcription start site region 94819
Tdg 10 82629821 to 82650494 20673 + protein coding gene thymine DNA glycosylase
Glt8d2 10 82650433 to 82690650 40217 - protein coding gene glycosyltransferase 8 domain containing 2
Aem3 10 82655104 to 82655287 183 QTL anti-erythrocyte autoantibody modifier 3
D10Mit42 10 82655104 to 82655287 183 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 42
El3 10 82655104 to 82655287 183 QTL epilepsy 3
Insq9 10 82655104 to 82655287 183 QTL insulin QTL 9
Ssrq4 10 82655104 to 91020240 8365136 QTL stress response QTL 4
Tssr98674 10 82662626 to 82662661 35 - TSS region transcription start site region 98674
Cpgi2021 10 82666602 to 82666901 299 CpG island CpG island 2021
Tssr98675 10 82690573 to 82690591 18 - TSS region transcription start site region 98675
Tssr98676 10 82690608 to 82690636 28 - TSS region transcription start site region 98676
D10Mit140 10 82695789 to 82695872 83 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 140
Hcfc2 10 82696160 to 82742428 46268 + protein coding gene host cell factor C2
Tssr94820 10 82697354 to 82697362 8 + TSS region transcription start site region 94820
Cpgi2022 10 82698666 to 82699961 1295 CpG island CpG island 2022
Tssr94821 10 82699097 to 82699149 52 + TSS region transcription start site region 94821
Tssr94822 10 82699159 to 82699170 11 + TSS region transcription start site region 94822
Tssr94823 10 82699183 to 82699197 14 + TSS region transcription start site region 94823
Tssr94824 10 82699209 to 82699218 9 + TSS region transcription start site region 94824
Tssr94825 10 82699229 to 82699238 9 + TSS region transcription start site region 94825
Tssr94826 10 82707959 to 82707964 5 + TSS region transcription start site region 94826
Nfyb 10 82748701 to 82764144 15443 - protein coding gene nuclear transcription factor-Y beta
Cpgi2023 10 82763368 to 82764687 1319 CpG island CpG island 2023
Tssr98677 10 82763868 to 82763896 28 - TSS region transcription start site region 98677
Tssr98678 10 82763904 to 82763949 45 - TSS region transcription start site region 98678
Tssr98679 10 82763964 to 82763975 11 - TSS region transcription start site region 98679
Tssr98680 10 82764036 to 82764080 44 - TSS region transcription start site region 98680
Tssr98681 10 82764088 to 82764119 31 - TSS region transcription start site region 98681
Tssr98682 10 82764133 to 82764157 24 - TSS region transcription start site region 98682
Tssr94827 10 82764262 to 82764277 15 + TSS region transcription start site region 94827
Gm47560 10 82769744 to 82769905 161 - pseudogene predicted gene, 47560
Tssr98683 10 82771129 to 82771130 1 - TSS region transcription start site region 98683
Tssr94828 10 82771310 to 82771352 42 + TSS region transcription start site region 94828
Gm47561 10 82771321 to 82777781 6460 + lincRNA gene predicted gene, 47561
Tssr94829 10 82795168 to 82795198 30 + TSS region transcription start site region 94829
Tssr94830 10 82795924 to 82795954 30 + TSS region transcription start site region 94830
Cpgi2024 10 82811818 to 82812631 813 CpG island CpG island 2024
1700028I16Rik 10 82812123 to 82824242 12119 + lincRNA gene RIKEN cDNA 1700028I16 gene
Tssr94831 10 82812199 to 82812209 10 + TSS region transcription start site region 94831
Tssr98684 10 82814133 to 82814153 20 - TSS region transcription start site region 98684
Tssr94832 10 82833891 to 82833897 6 + TSS region transcription start site region 94832
Tssr94833 10 82833926 to 82833945 19 + TSS region transcription start site region 94833
Txnrd1 10 82833951 to 82897712 63761 + protein coding gene thioredoxin reductase 1
Tssr94834 10 82833955 to 82833965 10 + TSS region transcription start site region 94834
Tssr94835 10 82833966 to 82833975 9 + TSS region transcription start site region 94835