Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:81428066-81588099

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nfic 10 81396191 to 81431133 34942 - protein coding gene nuclear factor I/C
Cpgi1982 10 81429463 to 81431762 2299 CpG island CpG island 1982
Tssr98609 10 81430804 to 81430845 41 - TSS region transcription start site region 98609
Tssr98610 10 81430966 to 81431039 73 - TSS region transcription start site region 98610
Gm31764 10 81431468 to 81431922 454 + lncRNA gene predicted gene, 31764
Tssr98611 10 81431547 to 81431562 15 - TSS region transcription start site region 98611
Cpgi1983 10 81432566 to 81433317 751 CpG island CpG island 1983
Cpgi1984 10 81433610 to 81434229 619 CpG island CpG island 1984
Cpgi1985 10 81452343 to 81453376 1033 CpG island CpG island 1985
Tssr94768 10 81453219 to 81453226 7 + TSS region transcription start site region 94768
Cpgi1986 10 81455447 to 81455757 310 CpG island CpG island 1986
Celf5 10 81459227 to 81482709 23482 - protein coding gene CUGBP, Elav-like family member 5
Cpgi1987 10 81459450 to 81459709 259 CpG island CpG island 1987
Tssr98612 10 81459898 to 81459911 13 - TSS region transcription start site region 98612
Cpgi1988 10 81460487 to 81460689 202 CpG island CpG island 1988
Tssr98613 10 81460758 to 81460773 15 - TSS region transcription start site region 98613
Tssr98614 10 81461029 to 81461058 29 - TSS region transcription start site region 98614
Gm16105 10 81461159 to 81462972 1813 + antisense lncRNA gene predicted gene 16105
Tssr98615 10 81461349 to 81461365 16 - TSS region transcription start site region 98615
Tssr94769 10 81461565 to 81461567 2 + TSS region transcription start site region 94769
Tssr98616 10 81461627 to 81461643 16 - TSS region transcription start site region 98616
Tssr98617 10 81461722 to 81461733 11 - TSS region transcription start site region 98617
Tssr98618 10 81461846 to 81461862 16 - TSS region transcription start site region 98618
Tssr98619 10 81461973 to 81461994 21 - TSS region transcription start site region 98619
Cpgi1989 10 81464137 to 81464785 648 CpG island CpG island 1989
Tssr98620 10 81464439 to 81464476 37 - TSS region transcription start site region 98620
Cpgi1990 10 81470563 to 81470875 312 CpG island CpG island 1990
Tssr98621 10 81472859 to 81472868 9 - TSS region transcription start site region 98621
Cpgi1991 10 81473169 to 81473412 243 CpG island CpG island 1991
Cpgi1992 10 81481796 to 81483101 1305 CpG island CpG island 1992
Tssr98622 10 81482093 to 81482113 20 - TSS region transcription start site region 98622
Tssr98623 10 81482114 to 81482150 36 - TSS region transcription start site region 98623
Tssr98624 10 81482333 to 81482353 20 - TSS region transcription start site region 98624
Tssr98625 10 81482637 to 81482644 7 - TSS region transcription start site region 98625
Tssr98626 10 81482648 to 81482653 5 - TSS region transcription start site region 98626
Tssr98627 10 81482655 to 81482725 70 - TSS region transcription start site region 98627
Ncln 10 81486249 to 81496392 10143 - protein coding gene nicalin
Tssr98628 10 81487185 to 81487229 44 - TSS region transcription start site region 98628
Cpgi1993 10 81495500 to 81496657 1157 CpG island CpG island 1993
Tssr98629 10 81496313 to 81496324 11 - TSS region transcription start site region 98629
Tssr98630 10 81496329 to 81496387 58 - TSS region transcription start site region 98630
S1pr4 10 81497747 to 81500132 2385 - protein coding gene sphingosine-1-phosphate receptor 4
Cpgi1994 10 81498520 to 81499626 1106 CpG island CpG island 1994
Tssr98631 10 81499596 to 81499608 12 - TSS region transcription start site region 98631
Tssr98632 10 81499622 to 81499643 21 - TSS region transcription start site region 98632
Tssr98633 10 81499650 to 81499670 20 - TSS region transcription start site region 98633
Tssr98634 10 81499686 to 81499713 27 - TSS region transcription start site region 98634
Gna15 10 81502306 to 81524225 21919 - protein coding gene guanine nucleotide binding protein, alpha 15
Cpgi1995 10 81502693 to 81503456 763 CpG island CpG island 1995
Gm16106 10 81504473 to 81504766 293 + pseudogene predicted gene 16106
Gm25595 10 81504622 to 81504718 96 + miRNA gene predicted gene, 25595
Tssr98635 10 81508066 to 81508099 33 - TSS region transcription start site region 98635
Tssr98636 10 81508150 to 81508189 39 - TSS region transcription start site region 98636
Tssr98637 10 81508202 to 81508227 25 - TSS region transcription start site region 98637
Tssr98638 10 81508919 to 81508965 46 - TSS region transcription start site region 98638
Tssr98639 10 81509096 to 81509105 9 - TSS region transcription start site region 98639
Tssr98640 10 81509280 to 81509287 7 - TSS region transcription start site region 98640
Cpgi1996 10 81512325 to 81512567 242 CpG island CpG island 1996
Tssr98641 10 81524079 to 81524098 19 - TSS region transcription start site region 98641
Tssr98642 10 81524106 to 81524127 21 - TSS region transcription start site region 98642
Tssr98643 10 81524130 to 81524139 9 - TSS region transcription start site region 98643
Tssr98644 10 81524248 to 81524259 11 - TSS region transcription start site region 98644
Tssr98645 10 81524271 to 81524285 14 - TSS region transcription start site region 98645
Tssr98646 10 81524300 to 81524317 17 - TSS region transcription start site region 98646
Tssr98647 10 81524335 to 81524346 11 - TSS region transcription start site region 98647
Tssr98648 10 81524381 to 81524390 9 - TSS region transcription start site region 98648
Tssr98649 10 81524408 to 81524409 1 - TSS region transcription start site region 98649
Tssr94770 10 81525374 to 81525387 13 + TSS region transcription start site region 94770
Tssr94771 10 81525395 to 81525419 24 + TSS region transcription start site region 94771
Gm47697 10 81525411 to 81526988 1577 + lincRNA gene predicted gene, 47697
Cpgi1997 10 81526775 to 81527139 364 CpG island CpG island 1997
Gna11 10 81528732 to 81545046 16314 - protein coding gene guanine nucleotide binding protein, alpha 11
Tssr98650 10 81530458 to 81530478 20 - TSS region transcription start site region 98650
Tssr98651 10 81530523 to 81530547 24 - TSS region transcription start site region 98651
Cpgi1998 10 81543941 to 81545761 1820 CpG island CpG island 1998
Tssr98652 10 81545056 to 81545169 113 - TSS region transcription start site region 98652
Tssr98653 10 81545175 to 81545192 17 - TSS region transcription start site region 98653
Cpgi1999 10 81559032 to 81560595 1563 CpG island CpG island 1999
Tssr94772 10 81559428 to 81559444 16 + TSS region transcription start site region 94772
Tssr94773 10 81559447 to 81559498 51 + TSS region transcription start site region 94773
Tle5 10 81559488 to 81566362 6874 + protein coding gene TLE family member 5, transcriptional modulator
Tssr94774 10 81559524 to 81559583 59 + TSS region transcription start site region 94774
Tssr94775 10 81559586 to 81559595 9 + TSS region transcription start site region 94775
Tssr3288 10 81559614 to 81559619 5 + TSS region transcription start site region 3288
Tssr94776 10 81561209 to 81561259 50 + TSS region transcription start site region 94776
Tssr94777 10 81563826 to 81563845 19 + TSS region transcription start site region 94777
Tssr94778 10 81564085 to 81564122 37 + TSS region transcription start site region 94778
Tssr94779 10 81564445 to 81564456 11 + TSS region transcription start site region 94779
Tssr94780 10 81564658 to 81564690 32 + TSS region transcription start site region 94780
Tssr94781 10 81565537 to 81565563 26 + TSS region transcription start site region 94781
Tssr94782 10 81565663 to 81565687 24 + TSS region transcription start site region 94782
Tssr94783 10 81565706 to 81565733 27 + TSS region transcription start site region 94783
Tssr98654 10 81565732 to 81565835 103 - TSS region transcription start site region 98654
Tssr94784 10 81565737 to 81565766 29 + TSS region transcription start site region 94784
Tssr94785 10 81565788 to 81565799 11 + TSS region transcription start site region 94785
Tssr94786 10 81565862 to 81565878 16 + TSS region transcription start site region 94786
Tssr94787 10 81565958 to 81565977 19 + TSS region transcription start site region 94787
Gm31936 10 81569046 to 81571795 2749 + lncRNA gene predicted gene, 31936
Cpgi2000 10 81570808 to 81571107 299 CpG island CpG island 2000
Cpgi2001 10 81571740 to 81571947 207 CpG island CpG island 2001
Gm15917 10 81572612 to 81575940 3328 - antisense lncRNA gene predicted gene 15917
Tle2 10 81574561 to 81590845 16284 + protein coding gene transducin-like enhancer of split 2
Tssr94788 10 81574699 to 81574738 39 + TSS region transcription start site region 94788
Cpgi2002 10 81575140 to 81575661 521 CpG island CpG island 2002
Tssr94789 10 81575235 to 81575254 19 + TSS region transcription start site region 94789
Tssr94790 10 81575257 to 81575269 12 + TSS region transcription start site region 94790
Tssr94791 10 81575277 to 81575301 24 + TSS region transcription start site region 94791
Tssr94792 10 81575306 to 81575327 21 + TSS region transcription start site region 94792
Tssr94793 10 81575545 to 81575557 12 + TSS region transcription start site region 94793
Cpgi2003 10 81580286 to 81580809 523 CpG island CpG island 2003
Cpgi2004 10 81587702 to 81587877 175 CpG island CpG island 2004