Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:81290311-81490326

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145 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tjp3 10 81273207 to 81291581 18374 - protein coding gene tight junction protein 3
Tssr98577 10 81291180 to 81291198 18 - TSS region transcription start site region 98577
Tssr98578 10 81291207 to 81291221 14 - TSS region transcription start site region 98578
Tssr98579 10 81291227 to 81291282 55 - TSS region transcription start site region 98579
Tssr98580 10 81291500 to 81291526 26 - TSS region transcription start site region 98580
Cpgi1966 10 81292538 to 81293869 1331 CpG island CpG island 1966
Tssr94730 10 81292961 to 81293005 44 + TSS region transcription start site region 94730
Pip5k1c 10 81292963 to 81319973 27010 + protein coding gene phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
Tssr94731 10 81293014 to 81293027 13 + TSS region transcription start site region 94731
Tssr94732 10 81297354 to 81297370 16 + TSS region transcription start site region 94732
Tssr98581 10 81298791 to 81298841 50 - TSS region transcription start site region 98581
Gm16315 10 81301701 to 81302917 1216 - antisense lncRNA gene predicted gene 16315
Tssr3284 10 81302053 to 81302056 3 - TSS region transcription start site region 3284
Tssr98582 10 81302921 to 81302941 20 - TSS region transcription start site region 98582
Cpgi1967 10 81302926 to 81303171 245 CpG island CpG island 1967
Tssr98583 10 81303510 to 81303546 36 - TSS region transcription start site region 98583
Tssr94733 10 81317875 to 81317892 17 + TSS region transcription start site region 94733
Tssr94734 10 81318024 to 81318028 4 + TSS region transcription start site region 94734
Tssr94735 10 81319502 to 81319540 38 + TSS region transcription start site region 94735
Tssr94736 10 81319689 to 81319727 38 + TSS region transcription start site region 94736
Cpgi1968 10 81319697 to 81321765 2068 CpG island CpG island 1968
Cactin 10 81321103 to 81326242 5139 + protein coding gene cactin, spliceosome C complex subunit
Tssr94737 10 81321187 to 81321247 60 + TSS region transcription start site region 94737
Tssr94738 10 81321255 to 81321270 15 + TSS region transcription start site region 94738
Tssr94739 10 81328686 to 81328704 18 + TSS region transcription start site region 94739
Tssr94740 10 81328719 to 81328739 20 + TSS region transcription start site region 94740
Tbxa2r 10 81328731 to 81335172 6441 + protein coding gene thromboxane A2 receptor
Cpgi1969 10 81332258 to 81333273 1015 CpG island CpG island 1969
Gipc3 10 81336541 to 81343744 7203 - protein coding gene GIPC PDZ domain containing family, member 3
Cpgi1970 10 81337742 to 81338397 655 CpG island CpG island 1970
Tssr94741 10 81340847 to 81340870 23 + TSS region transcription start site region 94741
Cpgi1971 10 81342869 to 81343707 838 CpG island CpG island 1971
Tssr3285 10 81343248 to 81343254 6 - TSS region transcription start site region 3285
Tssr98584 10 81343275 to 81343286 11 - TSS region transcription start site region 98584
Tssr98585 10 81343302 to 81343314 12 - TSS region transcription start site region 98585
Hmg20b 10 81346048 to 81350480 4432 - protein coding gene high mobility group 20B
Cpgi1972 10 81346160 to 81347458 1298 CpG island CpG island 1972
Tssr98586 10 81346702 to 81346770 68 - TSS region transcription start site region 98586
Tssr98587 10 81349227 to 81349240 13 - TSS region transcription start site region 98587
Cpgi1973 10 81349813 to 81351005 1192 CpG island CpG island 1973
Tssr98588 10 81350246 to 81350259 13 - TSS region transcription start site region 98588
Tssr98589 10 81350267 to 81350290 23 - TSS region transcription start site region 98589
Tssr98590 10 81350305 to 81350369 64 - TSS region transcription start site region 98590
Tssr98591 10 81350389 to 81350466 77 - TSS region transcription start site region 98591
Cpgi1974 10 81357092 to 81358455 1363 CpG island CpG island 1974
Tssr98592 10 81357376 to 81357393 17 - TSS region transcription start site region 98592
Mfsd12 10 81357491 to 81366225 8734 + protein coding gene major facilitator superfamily domain containing 12
Tssr94742 10 81357503 to 81357585 82 + TSS region transcription start site region 94742
Tssr98593 10 81358350 to 81358368 18 - TSS region transcription start site region 98593
Tssr98594 10 81358911 to 81358935 24 - TSS region transcription start site region 98594
Cpgi1975 10 81363831 to 81365444 1613 CpG island CpG island 1975
4930404N11Rik 10 81364024 to 81365820 1796 - protein coding gene RIKEN cDNA 4930404N11 gene
Tssr94743 10 81364026 to 81364038 12 + TSS region transcription start site region 94743
Tssr94744 10 81364285 to 81364301 16 + TSS region transcription start site region 94744
Tssr94745 10 81364320 to 81364372 52 + TSS region transcription start site region 94745
Tssr94746 10 81364397 to 81364414 17 + TSS region transcription start site region 94746
Tssr94747 10 81364415 to 81364426 11 + TSS region transcription start site region 94747
Tssr98595 10 81364846 to 81364859 13 - TSS region transcription start site region 98595
Tssr98596 10 81365784 to 81365801 17 - TSS region transcription start site region 98596
Tssr98597 10 81365807 to 81365825 18 - TSS region transcription start site region 98597
Tssr98598 10 81365834 to 81365843 9 - TSS region transcription start site region 98598
Fzr1 10 81366879 to 81378370 11491 - protein coding gene fizzy and cell division cycle 20 related 1
Cpgi1976 10 81377788 to 81379166 1378 CpG island CpG island 1976
Tssr3286 10 81378354 to 81378361 7 - TSS region transcription start site region 3286
Tssr98599 10 81378380 to 81378391 11 - TSS region transcription start site region 98599
Tssr98600 10 81378398 to 81378456 58 - TSS region transcription start site region 98600
Tssr98601 10 81378459 to 81378482 23 - TSS region transcription start site region 98601
Tssr98602 10 81378828 to 81378844 16 - TSS region transcription start site region 98602
Cpgi1977 10 81384084 to 81385117 1033 CpG island CpG island 1977
Tssr94748 10 81384418 to 81384452 34 + TSS region transcription start site region 94748
Dohh 10 81384428 to 81388352 3924 + protein coding gene deoxyhypusine hydroxylase/monooxygenase
Tssr94749 10 81384457 to 81384507 50 + TSS region transcription start site region 94749
Gm48551 10 81384466 to 81391560 7094 + protein coding gene predicted gene, 48551
Tssr98603 10 81385244 to 81385250 6 - TSS region transcription start site region 98603
Mir6913 10 81386347 to 81386412 65 + miRNA gene microRNA 6913
Gm48552 10 81389005 to 81391267 2262 + protein coding gene predicted gene, 48552
Tssr94750 10 81390311 to 81390326 15 + TSS region transcription start site region 94750
Tssr94751 10 81390339 to 81390369 30 + TSS region transcription start site region 94751
Tssr94752 10 81393043 to 81393058 15 + TSS region transcription start site region 94752
Smim24 10 81393064 to 81395079 2015 + protein coding gene small integral membrane protein 24
Tssr94753 10 81393610 to 81393688 78 + TSS region transcription start site region 94753
Tssr94754 10 81393690 to 81393701 11 + TSS region transcription start site region 94754
Tssr94755 10 81393830 to 81393841 11 + TSS region transcription start site region 94755
Tssr94756 10 81394090 to 81394110 20 + TSS region transcription start site region 94756
Tssr98604 10 81394799 to 81394820 21 - TSS region transcription start site region 98604
Tssr94757 10 81394807 to 81394824 17 + TSS region transcription start site region 94757
Tssr3287 10 81394828 to 81394839 11 - TSS region transcription start site region 3287
Tssr94758 10 81394910 to 81394924 14 + TSS region transcription start site region 94758
Tssr94759 10 81394996 to 81395052 56 + TSS region transcription start site region 94759
Tssr94760 10 81395086 to 81395101 15 + TSS region transcription start site region 94760
Tssr94761 10 81395267 to 81395274 7 + TSS region transcription start site region 94761
Nfic 10 81396191 to 81431133 34942 - protein coding gene nuclear factor I/C
Tssr94762 10 81396253 to 81396257 4 + TSS region transcription start site region 94762
Cpgi1978 10 81400160 to 81400702 542 CpG island CpG island 1978
Tssr98605 10 81404968 to 81405004 36 - TSS region transcription start site region 98605
Tssr98606 10 81406136 to 81406165 29 - TSS region transcription start site region 98606
Cpgi1979 10 81407384 to 81407816 432 CpG island CpG island 1979
Tssr98607 10 81407660 to 81407683 23 - TSS region transcription start site region 98607
Tssr94763 10 81409511 to 81409528 17 + TSS region transcription start site region 94763
Tssr94764 10 81409572 to 81409602 30 + TSS region transcription start site region 94764
Gm16104 10 81409575 to 81411579 2004 + antisense lncRNA gene predicted gene 16104
Tssr94765 10 81414085 to 81414099 14 + TSS region transcription start site region 94765
Mir1191b 10 81416240 to 81416297 57 - miRNA gene microRNA 1191b
Tssr94766 10 81419855 to 81419866 11 + TSS region transcription start site region 94766
Tssr94767 10 81419995 to 81420010 15 + TSS region transcription start site region 94767
Cpgi1980 10 81420175 to 81420799 624 CpG island CpG island 1980
Cpgi1981 10 81426189 to 81427742 1553 CpG island CpG island 1981
Tssr98608 10 81427122 to 81427179 57 - TSS region transcription start site region 98608
Cpgi1982 10 81429463 to 81431762 2299 CpG island CpG island 1982
Tssr98609 10 81430804 to 81430845 41 - TSS region transcription start site region 98609
Tssr98610 10 81430966 to 81431039 73 - TSS region transcription start site region 98610
Gm31764 10 81431468 to 81431922 454 + lncRNA gene predicted gene, 31764
Tssr98611 10 81431547 to 81431562 15 - TSS region transcription start site region 98611
Cpgi1983 10 81432566 to 81433317 751 CpG island CpG island 1983
Cpgi1984 10 81433610 to 81434229 619 CpG island CpG island 1984
Cpgi1985 10 81452343 to 81453376 1033 CpG island CpG island 1985
Tssr94768 10 81453219 to 81453226 7 + TSS region transcription start site region 94768
Cpgi1986 10 81455447 to 81455757 310 CpG island CpG island 1986
Celf5 10 81459227 to 81482709 23482 - protein coding gene CUGBP, Elav-like family member 5
Cpgi1987 10 81459450 to 81459709 259 CpG island CpG island 1987
Tssr98612 10 81459898 to 81459911 13 - TSS region transcription start site region 98612
Cpgi1988 10 81460487 to 81460689 202 CpG island CpG island 1988
Tssr98613 10 81460758 to 81460773 15 - TSS region transcription start site region 98613
Tssr98614 10 81461029 to 81461058 29 - TSS region transcription start site region 98614
Gm16105 10 81461159 to 81462972 1813 + antisense lncRNA gene predicted gene 16105
Tssr98615 10 81461349 to 81461365 16 - TSS region transcription start site region 98615
Tssr94769 10 81461565 to 81461567 2 + TSS region transcription start site region 94769
Tssr98616 10 81461627 to 81461643 16 - TSS region transcription start site region 98616
Tssr98617 10 81461722 to 81461733 11 - TSS region transcription start site region 98617
Tssr98618 10 81461846 to 81461862 16 - TSS region transcription start site region 98618
Tssr98619 10 81461973 to 81461994 21 - TSS region transcription start site region 98619
Cpgi1989 10 81464137 to 81464785 648 CpG island CpG island 1989
Tssr98620 10 81464439 to 81464476 37 - TSS region transcription start site region 98620
Cpgi1990 10 81470563 to 81470875 312 CpG island CpG island 1990
Tssr98621 10 81472859 to 81472868 9 - TSS region transcription start site region 98621
Cpgi1991 10 81473169 to 81473412 243 CpG island CpG island 1991
Cpgi1992 10 81481796 to 81483101 1305 CpG island CpG island 1992
Tssr98622 10 81482093 to 81482113 20 - TSS region transcription start site region 98622
Tssr98623 10 81482114 to 81482150 36 - TSS region transcription start site region 98623
Tssr98624 10 81482333 to 81482353 20 - TSS region transcription start site region 98624
Tssr98625 10 81482637 to 81482644 7 - TSS region transcription start site region 98625
Tssr98626 10 81482648 to 81482653 5 - TSS region transcription start site region 98626
Tssr98627 10 81482655 to 81482725 70 - TSS region transcription start site region 98627
Ncln 10 81486249 to 81496392 10143 - protein coding gene nicalin
Tssr98628 10 81487185 to 81487229 44 - TSS region transcription start site region 98628