Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:81287258-81378273

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tjp3 10 81273207 to 81291581 18374 - protein coding gene tight junction protein 3
Tssr98577 10 81291180 to 81291198 18 - TSS region transcription start site region 98577
Tssr98578 10 81291207 to 81291221 14 - TSS region transcription start site region 98578
Tssr98579 10 81291227 to 81291282 55 - TSS region transcription start site region 98579
Tssr98580 10 81291500 to 81291526 26 - TSS region transcription start site region 98580
Cpgi1966 10 81292538 to 81293869 1331 CpG island CpG island 1966
Tssr94730 10 81292961 to 81293005 44 + TSS region transcription start site region 94730
Pip5k1c 10 81292963 to 81319973 27010 + protein coding gene phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
Tssr94731 10 81293014 to 81293027 13 + TSS region transcription start site region 94731
Tssr94732 10 81297354 to 81297370 16 + TSS region transcription start site region 94732
Tssr98581 10 81298791 to 81298841 50 - TSS region transcription start site region 98581
Gm16315 10 81301701 to 81302917 1216 - antisense lncRNA gene predicted gene 16315
Tssr3284 10 81302053 to 81302056 3 - TSS region transcription start site region 3284
Tssr98582 10 81302921 to 81302941 20 - TSS region transcription start site region 98582
Cpgi1967 10 81302926 to 81303171 245 CpG island CpG island 1967
Tssr98583 10 81303510 to 81303546 36 - TSS region transcription start site region 98583
Tssr94733 10 81317875 to 81317892 17 + TSS region transcription start site region 94733
Tssr94734 10 81318024 to 81318028 4 + TSS region transcription start site region 94734
Tssr94735 10 81319502 to 81319540 38 + TSS region transcription start site region 94735
Tssr94736 10 81319689 to 81319727 38 + TSS region transcription start site region 94736
Cpgi1968 10 81319697 to 81321765 2068 CpG island CpG island 1968
Cactin 10 81321103 to 81326242 5139 + protein coding gene cactin, spliceosome C complex subunit
Tssr94737 10 81321187 to 81321247 60 + TSS region transcription start site region 94737
Tssr94738 10 81321255 to 81321270 15 + TSS region transcription start site region 94738
Tssr94739 10 81328686 to 81328704 18 + TSS region transcription start site region 94739
Tssr94740 10 81328719 to 81328739 20 + TSS region transcription start site region 94740
Tbxa2r 10 81328731 to 81335172 6441 + protein coding gene thromboxane A2 receptor
Cpgi1969 10 81332258 to 81333273 1015 CpG island CpG island 1969
Gipc3 10 81336541 to 81343744 7203 - protein coding gene GIPC PDZ domain containing family, member 3
Cpgi1970 10 81337742 to 81338397 655 CpG island CpG island 1970
Tssr94741 10 81340847 to 81340870 23 + TSS region transcription start site region 94741
Cpgi1971 10 81342869 to 81343707 838 CpG island CpG island 1971
Tssr3285 10 81343248 to 81343254 6 - TSS region transcription start site region 3285
Tssr98584 10 81343275 to 81343286 11 - TSS region transcription start site region 98584
Tssr98585 10 81343302 to 81343314 12 - TSS region transcription start site region 98585
Hmg20b 10 81346048 to 81350480 4432 - protein coding gene high mobility group 20B
Cpgi1972 10 81346160 to 81347458 1298 CpG island CpG island 1972
Tssr98586 10 81346702 to 81346770 68 - TSS region transcription start site region 98586
Tssr98587 10 81349227 to 81349240 13 - TSS region transcription start site region 98587
Cpgi1973 10 81349813 to 81351005 1192 CpG island CpG island 1973
Tssr98588 10 81350246 to 81350259 13 - TSS region transcription start site region 98588
Tssr98589 10 81350267 to 81350290 23 - TSS region transcription start site region 98589
Tssr98590 10 81350305 to 81350369 64 - TSS region transcription start site region 98590
Tssr98591 10 81350389 to 81350466 77 - TSS region transcription start site region 98591
Cpgi1974 10 81357092 to 81358455 1363 CpG island CpG island 1974
Tssr98592 10 81357376 to 81357393 17 - TSS region transcription start site region 98592
Mfsd12 10 81357491 to 81366225 8734 + protein coding gene major facilitator superfamily domain containing 12
Tssr94742 10 81357503 to 81357585 82 + TSS region transcription start site region 94742
Tssr98593 10 81358350 to 81358368 18 - TSS region transcription start site region 98593
Tssr98594 10 81358911 to 81358935 24 - TSS region transcription start site region 98594
Cpgi1975 10 81363831 to 81365444 1613 CpG island CpG island 1975
4930404N11Rik 10 81364024 to 81365820 1796 - protein coding gene RIKEN cDNA 4930404N11 gene
Tssr94743 10 81364026 to 81364038 12 + TSS region transcription start site region 94743
Tssr94744 10 81364285 to 81364301 16 + TSS region transcription start site region 94744
Tssr94745 10 81364320 to 81364372 52 + TSS region transcription start site region 94745
Tssr94746 10 81364397 to 81364414 17 + TSS region transcription start site region 94746
Tssr94747 10 81364415 to 81364426 11 + TSS region transcription start site region 94747
Tssr98595 10 81364846 to 81364859 13 - TSS region transcription start site region 98595
Tssr98596 10 81365784 to 81365801 17 - TSS region transcription start site region 98596
Tssr98597 10 81365807 to 81365825 18 - TSS region transcription start site region 98597
Tssr98598 10 81365834 to 81365843 9 - TSS region transcription start site region 98598
Fzr1 10 81366879 to 81378370 11491 - protein coding gene fizzy and cell division cycle 20 related 1
Cpgi1976 10 81377788 to 81379166 1378 CpG island CpG island 1976