Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:81187538-81398869

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dapk3 10 81183005 to 81193197 10192 + protein coding gene death-associated protein kinase 3
Cpgi1952 10 81189873 to 81190686 813 CpG island CpG island 1952
Cpgi1953 10 81191858 to 81193433 1575 CpG island CpG island 1953
Tssr94715 10 81192486 to 81192518 32 + TSS region transcription start site region 94715
Cpgi1954 10 81194543 to 81194706 163 CpG island CpG island 1954
Tssr94716 10 81194600 to 81194607 7 + TSS region transcription start site region 94716
Tssr94717 10 81194684 to 81194700 16 + TSS region transcription start site region 94717
Atcayos 10 81194691 to 81208370 13679 + antisense lncRNA gene ataxia, cerebellar, Cayman type, opposite strand
Tssr94718 10 81195080 to 81195083 3 + TSS region transcription start site region 94718
Nmrk2 10 81198170 to 81202051 3881 - protein coding gene nicotinamide riboside kinase 2
Tssr98572 10 81202044 to 81202059 15 - TSS region transcription start site region 98572
Atcay 10 81204513 to 81230779 26266 - protein coding gene ataxia, cerebellar, Cayman type
Tssr94719 10 81207051 to 81207064 13 + TSS region transcription start site region 94719
Cpgi1955 10 81230375 to 81230732 357 CpG island CpG island 1955
Tssr98573 10 81230758 to 81230769 11 - TSS region transcription start site region 98573
Tssr98574 10 81230773 to 81230825 52 - TSS region transcription start site region 98574
Cpgi1956 10 81232824 to 81233628 804 CpG island CpG island 1956
Tssr94720 10 81233147 to 81233191 44 + TSS region transcription start site region 94720
Zfr2 10 81233155 to 81252123 18968 + protein coding gene zinc finger RNA binding protein 2
Cpgi1957 10 81239629 to 81240233 604 CpG island CpG island 1957
Cpgi1958 10 81244562 to 81244771 209 CpG island CpG island 1958
Matk 10 81252798 to 81262985 10187 + protein coding gene megakaryocyte-associated tyrosine kinase
Cpgi1959 10 81252967 to 81253366 399 CpG island CpG island 1959
Tssr94721 10 81257056 to 81257060 4 + TSS region transcription start site region 94721
Cpgi1960 10 81257155 to 81258212 1057 CpG island CpG island 1960
Tssr94722 10 81257277 to 81257309 32 + TSS region transcription start site region 94722
Tssr94723 10 81257316 to 81257333 17 + TSS region transcription start site region 94723
Tssr94724 10 81257347 to 81257362 15 + TSS region transcription start site region 94724
Tssr94725 10 81257456 to 81257526 70 + TSS region transcription start site region 94725
Tssr94726 10 81258148 to 81258167 19 + TSS region transcription start site region 94726
Mrpl54 10 81264722 to 81266926 2204 - protein coding gene mitochondrial ribosomal protein L54
Cpgi1961 10 81266435 to 81267069 634 CpG island CpG island 1961
Tssr94727 10 81266693 to 81266716 23 + TSS region transcription start site region 94727
Tssr98575 10 81266906 to 81266933 27 - TSS region transcription start site region 98575
Apba3 10 81266965 to 81273247 6282 + protein coding gene amyloid beta (A4) precursor protein-binding, family A, member 3
Cpgi1962 10 81268049 to 81268424 375 CpG island CpG island 1962
Tssr94728 10 81268176 to 81268205 29 + TSS region transcription start site region 94728
Tssr94729 10 81268207 to 81268270 63 + TSS region transcription start site region 94729
Mir3057 10 81271597 to 81271687 90 + miRNA gene microRNA 3057
Tjp3 10 81273207 to 81291581 18374 - protein coding gene tight junction protein 3
Cpgi1963 10 81277113 to 81277410 297 CpG island CpG island 1963
Cpgi1964 10 81279133 to 81279349 216 CpG island CpG island 1964
Cpgi1965 10 81285446 to 81286333 887 CpG island CpG island 1965
Tssr98576 10 81285763 to 81285798 35 - TSS region transcription start site region 98576
Tssr98577 10 81291180 to 81291198 18 - TSS region transcription start site region 98577
Tssr98578 10 81291207 to 81291221 14 - TSS region transcription start site region 98578
Tssr98579 10 81291227 to 81291282 55 - TSS region transcription start site region 98579
Tssr98580 10 81291500 to 81291526 26 - TSS region transcription start site region 98580
Cpgi1966 10 81292538 to 81293869 1331 CpG island CpG island 1966
Tssr94730 10 81292961 to 81293005 44 + TSS region transcription start site region 94730
Pip5k1c 10 81292963 to 81319973 27010 + protein coding gene phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
Tssr94731 10 81293014 to 81293027 13 + TSS region transcription start site region 94731
Tssr94732 10 81297354 to 81297370 16 + TSS region transcription start site region 94732
Tssr98581 10 81298791 to 81298841 50 - TSS region transcription start site region 98581
Gm16315 10 81301701 to 81302917 1216 - antisense lncRNA gene predicted gene 16315
Tssr3284 10 81302053 to 81302056 3 - TSS region transcription start site region 3284
Tssr98582 10 81302921 to 81302941 20 - TSS region transcription start site region 98582
Cpgi1967 10 81302926 to 81303171 245 CpG island CpG island 1967
Tssr98583 10 81303510 to 81303546 36 - TSS region transcription start site region 98583
Tssr94733 10 81317875 to 81317892 17 + TSS region transcription start site region 94733
Tssr94734 10 81318024 to 81318028 4 + TSS region transcription start site region 94734
Tssr94735 10 81319502 to 81319540 38 + TSS region transcription start site region 94735
Tssr94736 10 81319689 to 81319727 38 + TSS region transcription start site region 94736
Cpgi1968 10 81319697 to 81321765 2068 CpG island CpG island 1968
Cactin 10 81321103 to 81326242 5139 + protein coding gene cactin, spliceosome C complex subunit
Tssr94737 10 81321187 to 81321247 60 + TSS region transcription start site region 94737
Tssr94738 10 81321255 to 81321270 15 + TSS region transcription start site region 94738
Tssr94739 10 81328686 to 81328704 18 + TSS region transcription start site region 94739
Tssr94740 10 81328719 to 81328739 20 + TSS region transcription start site region 94740
Tbxa2r 10 81328731 to 81335172 6441 + protein coding gene thromboxane A2 receptor
Cpgi1969 10 81332258 to 81333273 1015 CpG island CpG island 1969
Gipc3 10 81336541 to 81343744 7203 - protein coding gene GIPC PDZ domain containing family, member 3
Cpgi1970 10 81337742 to 81338397 655 CpG island CpG island 1970
Tssr94741 10 81340847 to 81340870 23 + TSS region transcription start site region 94741
Cpgi1971 10 81342869 to 81343707 838 CpG island CpG island 1971
Tssr3285 10 81343248 to 81343254 6 - TSS region transcription start site region 3285
Tssr98584 10 81343275 to 81343286 11 - TSS region transcription start site region 98584
Tssr98585 10 81343302 to 81343314 12 - TSS region transcription start site region 98585
Hmg20b 10 81346048 to 81350480 4432 - protein coding gene high mobility group 20B
Cpgi1972 10 81346160 to 81347458 1298 CpG island CpG island 1972
Tssr98586 10 81346702 to 81346770 68 - TSS region transcription start site region 98586
Tssr98587 10 81349227 to 81349240 13 - TSS region transcription start site region 98587
Cpgi1973 10 81349813 to 81351005 1192 CpG island CpG island 1973
Tssr98588 10 81350246 to 81350259 13 - TSS region transcription start site region 98588
Tssr98589 10 81350267 to 81350290 23 - TSS region transcription start site region 98589
Tssr98590 10 81350305 to 81350369 64 - TSS region transcription start site region 98590
Tssr98591 10 81350389 to 81350466 77 - TSS region transcription start site region 98591
Cpgi1974 10 81357092 to 81358455 1363 CpG island CpG island 1974
Tssr98592 10 81357376 to 81357393 17 - TSS region transcription start site region 98592
Mfsd12 10 81357491 to 81366225 8734 + protein coding gene major facilitator superfamily domain containing 12
Tssr94742 10 81357503 to 81357585 82 + TSS region transcription start site region 94742
Tssr98593 10 81358350 to 81358368 18 - TSS region transcription start site region 98593
Tssr98594 10 81358911 to 81358935 24 - TSS region transcription start site region 98594
Cpgi1975 10 81363831 to 81365444 1613 CpG island CpG island 1975
4930404N11Rik 10 81364024 to 81365820 1796 - protein coding gene RIKEN cDNA 4930404N11 gene
Tssr94743 10 81364026 to 81364038 12 + TSS region transcription start site region 94743
Tssr94744 10 81364285 to 81364301 16 + TSS region transcription start site region 94744
Tssr94745 10 81364320 to 81364372 52 + TSS region transcription start site region 94745
Tssr94746 10 81364397 to 81364414 17 + TSS region transcription start site region 94746
Tssr94747 10 81364415 to 81364426 11 + TSS region transcription start site region 94747
Tssr98595 10 81364846 to 81364859 13 - TSS region transcription start site region 98595
Tssr98596 10 81365784 to 81365801 17 - TSS region transcription start site region 98596
Tssr98597 10 81365807 to 81365825 18 - TSS region transcription start site region 98597
Tssr98598 10 81365834 to 81365843 9 - TSS region transcription start site region 98598
Fzr1 10 81366879 to 81378370 11491 - protein coding gene fizzy and cell division cycle 20 related 1
Cpgi1976 10 81377788 to 81379166 1378 CpG island CpG island 1976
Tssr3286 10 81378354 to 81378361 7 - TSS region transcription start site region 3286
Tssr98599 10 81378380 to 81378391 11 - TSS region transcription start site region 98599
Tssr98600 10 81378398 to 81378456 58 - TSS region transcription start site region 98600
Tssr98601 10 81378459 to 81378482 23 - TSS region transcription start site region 98601
Tssr98602 10 81378828 to 81378844 16 - TSS region transcription start site region 98602
Cpgi1977 10 81384084 to 81385117 1033 CpG island CpG island 1977
Tssr94748 10 81384418 to 81384452 34 + TSS region transcription start site region 94748
Dohh 10 81384428 to 81388352 3924 + protein coding gene deoxyhypusine hydroxylase/monooxygenase
Tssr94749 10 81384457 to 81384507 50 + TSS region transcription start site region 94749
Gm48551 10 81384466 to 81391560 7094 + protein coding gene predicted gene, 48551
Tssr98603 10 81385244 to 81385250 6 - TSS region transcription start site region 98603
Mir6913 10 81386347 to 81386412 65 + miRNA gene microRNA 6913
Gm48552 10 81389005 to 81391267 2262 + protein coding gene predicted gene, 48552
Tssr94750 10 81390311 to 81390326 15 + TSS region transcription start site region 94750
Tssr94751 10 81390339 to 81390369 30 + TSS region transcription start site region 94751
Tssr94752 10 81393043 to 81393058 15 + TSS region transcription start site region 94752
Smim24 10 81393064 to 81395079 2015 + protein coding gene small integral membrane protein 24
Tssr94753 10 81393610 to 81393688 78 + TSS region transcription start site region 94753
Tssr94754 10 81393690 to 81393701 11 + TSS region transcription start site region 94754
Tssr94755 10 81393830 to 81393841 11 + TSS region transcription start site region 94755
Tssr94756 10 81394090 to 81394110 20 + TSS region transcription start site region 94756
Tssr98604 10 81394799 to 81394820 21 - TSS region transcription start site region 98604
Tssr94757 10 81394807 to 81394824 17 + TSS region transcription start site region 94757
Tssr3287 10 81394828 to 81394839 11 - TSS region transcription start site region 3287
Tssr94758 10 81394910 to 81394924 14 + TSS region transcription start site region 94758
Tssr94759 10 81394996 to 81395052 56 + TSS region transcription start site region 94759
Tssr94760 10 81395086 to 81395101 15 + TSS region transcription start site region 94760
Tssr94761 10 81395267 to 81395274 7 + TSS region transcription start site region 94761
Nfic 10 81396191 to 81431133 34942 - protein coding gene nuclear factor I/C
Tssr94762 10 81396253 to 81396257 4 + TSS region transcription start site region 94762