Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:80622170-80892210

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31298 10 80612960 to 80622610 9650 - lncRNA gene predicted gene, 31298
Cpgi1901 10 80621872 to 80623680 1808 CpG island CpG island 1901
Tssr94584 10 80622211 to 80622216 5 + TSS region transcription start site region 94584
Tssr98477 10 80622521 to 80622526 5 - TSS region transcription start site region 98477
Tssr98478 10 80622594 to 80622609 15 - TSS region transcription start site region 98478
Tssr94585 10 80622677 to 80622758 81 + TSS region transcription start site region 94585
Csnk1g2 10 80622838 to 80640749 17911 + protein coding gene casein kinase 1, gamma 2
Tssr98479 10 80623607 to 80623648 41 - TSS region transcription start site region 98479
Tssr94586 10 80629646 to 80629655 9 + TSS region transcription start site region 94586
Tssr94587 10 80629671 to 80629687 16 + TSS region transcription start site region 94587
Btbd2 10 80642617 to 80657071 14454 - protein coding gene BTB (POZ) domain containing 2
Tssr94588 10 80644573 to 80644590 17 + TSS region transcription start site region 94588
Tssr98480 10 80645537 to 80645549 12 - TSS region transcription start site region 98480
Cpgi1902 10 80655641 to 80657075 1434 CpG island CpG island 1902
Tssr98481 10 80656485 to 80656519 34 - TSS region transcription start site region 98481
Tssr98482 10 80656987 to 80657003 16 - TSS region transcription start site region 98482
Tssr98483 10 80657092 to 80657098 6 - TSS region transcription start site region 98483
Tssr98484 10 80657102 to 80657119 17 - TSS region transcription start site region 98484
Mknk2 10 80665318 to 80676293 10975 - protein coding gene MAP kinase-interacting serine/threonine kinase 2
Tssr98485 10 80665909 to 80665913 4 - TSS region transcription start site region 98485
Tssr98486 10 80666964 to 80666980 16 - TSS region transcription start site region 98486
Tssr98487 10 80668666 to 80668675 9 - TSS region transcription start site region 98487
Tssr98488 10 80668684 to 80668695 11 - TSS region transcription start site region 98488
Tssr98489 10 80668701 to 80668724 23 - TSS region transcription start site region 98489
Cpgi1903 10 80675446 to 80677148 1702 CpG island CpG island 1903
Tssr98490 10 80676290 to 80676295 5 - TSS region transcription start site region 98490
Tssr94589 10 80676778 to 80676799 21 + TSS region transcription start site region 94589
Tssr94590 10 80677408 to 80677419 11 + TSS region transcription start site region 94590
Tssr98491 10 80678106 to 80678129 23 - TSS region transcription start site region 98491
Gm26541 10 80681838 to 80687176 5338 + lincRNA gene predicted gene, 26541
Mob3a 10 80685253 to 80701820 16567 - protein coding gene MOB kinase activator 3A
Tssr94591 10 80692695 to 80692721 26 + TSS region transcription start site region 94591
Tssr94592 10 80695571 to 80695589 18 + TSS region transcription start site region 94592
Tssr94593 10 80696405 to 80696408 3 + TSS region transcription start site region 94593
Cpgi1904 10 80701577 to 80703182 1605 CpG island CpG island 1904
Tssr98492 10 80701811 to 80701878 67 - TSS region transcription start site region 98492
Tssr98493 10 80701879 to 80701899 20 - TSS region transcription start site region 98493
Tssr98494 10 80701936 to 80701986 50 - TSS region transcription start site region 98494
Izumo4 10 80702184 to 80705373 3189 + protein coding gene IZUMO family member 4
Tssr94594 10 80702282 to 80702313 31 + TSS region transcription start site region 94594
Tssr94595 10 80702649 to 80702761 112 + TSS region transcription start site region 94595
Ap3d1 10 80706956 to 80742264 35308 - protein coding gene adaptor-related protein complex 3, delta 1 subunit
Tssr94596 10 80712756 to 80712792 36 + TSS region transcription start site region 94596
Tssr98495 10 80713995 to 80714008 13 - TSS region transcription start site region 98495
Tssr98496 10 80714014 to 80714033 19 - TSS region transcription start site region 98496
Tssr98497 10 80714048 to 80714067 19 - TSS region transcription start site region 98497
Tssr98498 10 80723386 to 80723391 5 - TSS region transcription start site region 98498
Cpgi1905 10 80741639 to 80742561 922 CpG island CpG island 1905
Tssr98499 10 80742222 to 80742280 58 - TSS region transcription start site region 98499
Tssr3279 10 80752343 to 80752362 19 + TSS region transcription start site region 3279
Tssr94597 10 80752571 to 80752607 36 + TSS region transcription start site region 94597
Tssr98500 10 80754666 to 80754671 5 - TSS region transcription start site region 98500
Cpgi1906 10 80754854 to 80756356 1502 CpG island CpG island 1906
Tssr98501 10 80754914 to 80754938 24 - TSS region transcription start site region 98501
Tssr94598 10 80755123 to 80755132 9 + TSS region transcription start site region 94598
Tssr94599 10 80755196 to 80755239 43 + TSS region transcription start site region 94599
Dot1l 10 80755206 to 80795461 40255 + protein coding gene DOT1-like, histone H3 methyltransferase (S. cerevisiae)
Tssr94600 10 80755240 to 80755251 11 + TSS region transcription start site region 94600
Tssr94601 10 80755292 to 80755303 11 + TSS region transcription start site region 94601
Tssr94602 10 80755390 to 80755399 9 + TSS region transcription start site region 94602
Tssr98502 10 80756959 to 80756973 14 - TSS region transcription start site region 98502
Tssr98503 10 80756993 to 80757006 13 - TSS region transcription start site region 98503
Tssr98504 10 80757127 to 80757148 21 - TSS region transcription start site region 98504
Tssr98505 10 80757170 to 80757210 40 - TSS region transcription start site region 98505
Tssr94603 10 80763883 to 80763889 6 + TSS region transcription start site region 94603
Tssr94604 10 80765656 to 80765660 4 + TSS region transcription start site region 94604
Gm17151 10 80766859 to 80768987 2128 - antisense lncRNA gene predicted gene 17151
Tssr94605 10 80780809 to 80780813 4 + TSS region transcription start site region 94605
Cpgi1907 10 80791772 to 80792719 947 CpG island CpG island 1907
Plekhj1 10 80796099 to 80798626 2527 - protein coding gene pleckstrin homology domain containing, family J member 1
Tssr98506 10 80796359 to 80796373 14 - TSS region transcription start site region 98506
Cpgi1908 10 80797482 to 80799537 2055 CpG island CpG island 1908
Tssr98507 10 80797861 to 80797891 30 - TSS region transcription start site region 98507
Tssr98508 10 80797919 to 80797950 31 - TSS region transcription start site region 98508
Tssr94606 10 80797953 to 80797967 14 + TSS region transcription start site region 94606
Tssr98509 10 80797969 to 80797990 21 - TSS region transcription start site region 98509
Tssr98510 10 80797992 to 80798003 11 - TSS region transcription start site region 98510
Tssr94607 10 80798031 to 80798110 79 + TSS region transcription start site region 94607
Tssr98511 10 80798191 to 80798216 25 - TSS region transcription start site region 98511
Tssr98512 10 80798220 to 80798299 79 - TSS region transcription start site region 98512
Tssr98513 10 80798476 to 80798576 100 - TSS region transcription start site region 98513
Sf3a2 10 80798589 to 80804924 6335 + protein coding gene splicing factor 3a, subunit 2
Tssr94608 10 80798613 to 80798616 3 + TSS region transcription start site region 94608
Tssr94609 10 80798630 to 80798642 12 + TSS region transcription start site region 94609
Tssr94610 10 80798652 to 80798757 105 + TSS region transcription start site region 94610
Tssr98514 10 80798855 to 80798898 43 - TSS region transcription start site region 98514
Tssr94611 10 80798902 to 80798952 50 + TSS region transcription start site region 94611
Tssr94612 10 80802398 to 80802403 5 + TSS region transcription start site region 94612
Tssr94613 10 80802807 to 80802822 15 + TSS region transcription start site region 94613
Tssr94614 10 80803281 to 80803292 11 + TSS region transcription start site region 94614
Tssr94615 10 80803601 to 80803617 16 + TSS region transcription start site region 94615
Tssr94616 10 80803645 to 80803660 15 + TSS region transcription start site region 94616
Tssr94617 10 80803663 to 80803682 19 + TSS region transcription start site region 94617
Tssr98515 10 80804027 to 80804071 44 - TSS region transcription start site region 98515
Tssr94618 10 80804037 to 80804063 26 + TSS region transcription start site region 94618
Tssr94619 10 80804068 to 80804090 22 + TSS region transcription start site region 94619
Tssr94620 10 80804100 to 80804118 18 + TSS region transcription start site region 94620
Tssr94621 10 80804124 to 80804150 26 + TSS region transcription start site region 94621
Tssr94622 10 80804211 to 80804227 16 + TSS region transcription start site region 94622
Tssr94623 10 80804720 to 80804740 20 + TSS region transcription start site region 94623
Tssr94624 10 80805233 to 80805249 16 + TSS region transcription start site region 94624
Amh 10 80805243 to 80807648 2405 + protein coding gene anti-Mullerian hormone
Tssr94625 10 80806128 to 80806141 13 + TSS region transcription start site region 94625
Cpgi1909 10 80806378 to 80807864 1486 CpG island CpG island 1909
Tssr94626 10 80806399 to 80806410 11 + TSS region transcription start site region 94626
Tssr94627 10 80806830 to 80806840 10 + TSS region transcription start site region 94627
Tssr98516 10 80807633 to 80807660 27 - TSS region transcription start site region 98516
Tssr94628 10 80807675 to 80807699 24 + TSS region transcription start site region 94628
Cpgi1910 10 80808167 to 80809179 1012 CpG island CpG island 1910
Jsrp1 10 80808496 to 80813498 5002 - protein coding gene junctional sarcoplasmic reticulum protein 1
Cpgi1911 10 80810159 to 80810580 421 CpG island CpG island 1911
Tssr98517 10 80812563 to 80812584 21 - TSS region transcription start site region 98517
Tssr98518 10 80813486 to 80813533 47 - TSS region transcription start site region 98518
Tssr98519 10 80818514 to 80818518 4 - TSS region transcription start site region 98519
Cpgi1912 10 80826196 to 80827690 1494 CpG island CpG island 1912
Tssr98520 10 80826211 to 80826277 66 - TSS region transcription start site region 98520
Tssr94629 10 80826367 to 80826381 14 + TSS region transcription start site region 94629
Oaz1 10 80826656 to 80829290 2634 + protein coding gene ornithine decarboxylase antizyme 1
Tssr94630 10 80826669 to 80826693 24 + TSS region transcription start site region 94630
Tssr98521 10 80826988 to 80827018 30 - TSS region transcription start site region 98521
Mir1982 10 80828797 to 80828870 73 + miRNA gene microRNA 1982
Lingo3 10 80832801 to 80844039 11238 - protein coding gene leucine rich repeat and Ig domain containing 3
Cpgi1913 10 80834297 to 80836163 1866 CpG island CpG island 1913
Cpgi1914 10 80843316 to 80844477 1161 CpG island CpG island 1914
Tssr98522 10 80844007 to 80844021 14 - TSS region transcription start site region 98522
Tssr98523 10 80844025 to 80844067 42 - TSS region transcription start site region 98523
Lsm7 10 80852821 to 80855209 2388 - protein coding gene LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
Cpgi1915 10 80854744 to 80856064 1320 CpG island CpG island 1915
Tssr98524 10 80855175 to 80855186 11 - TSS region transcription start site region 98524
Tssr98525 10 80855187 to 80855220 33 - TSS region transcription start site region 98525
Tssr3280 10 80855265 to 80855280 15 + TSS region transcription start site region 3280
Sppl2b 10 80855275 to 80868708 13433 + protein coding gene signal peptide peptidase like 2B
Tssr94631 10 80855289 to 80855322 33 + TSS region transcription start site region 94631
Tssr94632 10 80855323 to 80855338 15 + TSS region transcription start site region 94632
Tssr94633 10 80857114 to 80857137 23 + TSS region transcription start site region 94633
Cpgi1916 10 80864191 to 80864688 497 CpG island CpG island 1916
Tssr94634 10 80871800 to 80871824 24 + TSS region transcription start site region 94634
Tssr94635 10 80871836 to 80871852 16 + TSS region transcription start site region 94635
Tmprss9 10 80871848 to 80899492 27644 + protein coding gene transmembrane protease, serine 9
Tssr94636 10 80874241 to 80874247 6 + TSS region transcription start site region 94636
Cpgi1917 10 80888174 to 80888582 408 CpG island CpG island 1917
Cpgi1918 10 80890154 to 80890430 276 CpG island CpG island 1918