Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:80560391-80670435

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rexo1 10 80540922 to 80561560 20638 - protein coding gene REX1, RNA exonuclease 1
Cpgi1894 10 80560732 to 80561946 1214 CpG island CpG island 1894
Tssr98470 10 80561528 to 80561557 29 - TSS region transcription start site region 98470
Klf16 10 80567121 to 80577296 10175 - protein coding gene Kruppel-like factor 16
Tssr98471 10 80567907 to 80567908 1 - TSS region transcription start site region 98471
Cpgi1895 10 80571137 to 80571459 322 CpG island CpG island 1895
Cpgi1896 10 80575908 to 80578692 2784 CpG island CpG island 1896
Tssr98472 10 80577255 to 80577274 19 - TSS region transcription start site region 98472
Tssr98473 10 80577285 to 80577327 42 - TSS region transcription start site region 98473
Gm26710 10 80578647 to 80580677 2030 + lincRNA gene predicted gene, 26710
Abhd17a 10 80583654 to 80590341 6687 - protein coding gene abhydrolase domain containing 17A
Cpgi1897 10 80583892 to 80584270 378 CpG island CpG island 1897
Cpgi1898 10 80586507 to 80587249 742 CpG island CpG island 1898
Tssr98474 10 80586548 to 80586587 39 - TSS region transcription start site region 98474
Tssr98475 10 80587297 to 80587316 19 - TSS region transcription start site region 98475
Gm29093 10 80587965 to 80589790 1825 - sense intronic lncRNA gene predicted gene 29093
Tssr94574 10 80589381 to 80589387 6 + TSS region transcription start site region 94574
Cpgi1899 10 80589730 to 80590702 972 CpG island CpG island 1899
Tssr98476 10 80590292 to 80590329 37 - TSS region transcription start site region 98476
Cpgi1900 10 80602628 to 80603528 900 CpG island CpG island 1900
Tssr94575 10 80602865 to 80602904 39 + TSS region transcription start site region 94575
Adat3 10 80602880 to 80607654 4774 + protein coding gene adenosine deaminase, tRNA-specific 3
Scamp4 10 80602882 to 80615783 12901 + protein coding gene secretory carrier membrane protein 4
Tssr94576 10 80602905 to 80602912 7 + TSS region transcription start site region 94576
Tssr94577 10 80603201 to 80603259 58 + TSS region transcription start site region 94577
Tssr94578 10 80603282 to 80603297 15 + TSS region transcription start site region 94578
Gm49322 10 80606021 to 80615784 9763 + protein coding gene predicted gene, 49322
Tssr94579 10 80606570 to 80606601 31 + TSS region transcription start site region 94579
Tssr94580 10 80608849 to 80608854 5 + TSS region transcription start site region 94580
Mir6912 10 80609260 to 80609329 69 + miRNA gene microRNA 6912
Tssr94581 10 80609336 to 80609351 15 + TSS region transcription start site region 94581
Gm31298 10 80612960 to 80622610 9650 - lncRNA gene predicted gene, 31298
Tssr94582 10 80614949 to 80614979 30 + TSS region transcription start site region 94582
Tssr94583 10 80615391 to 80615435 44 + TSS region transcription start site region 94583
Cpgi1901 10 80621872 to 80623680 1808 CpG island CpG island 1901
Tssr94584 10 80622211 to 80622216 5 + TSS region transcription start site region 94584
Tssr98477 10 80622521 to 80622526 5 - TSS region transcription start site region 98477
Tssr98478 10 80622594 to 80622609 15 - TSS region transcription start site region 98478
Tssr94585 10 80622677 to 80622758 81 + TSS region transcription start site region 94585
Csnk1g2 10 80622838 to 80640749 17911 + protein coding gene casein kinase 1, gamma 2
Tssr98479 10 80623607 to 80623648 41 - TSS region transcription start site region 98479
Tssr94586 10 80629646 to 80629655 9 + TSS region transcription start site region 94586
Tssr94587 10 80629671 to 80629687 16 + TSS region transcription start site region 94587
Btbd2 10 80642617 to 80657071 14454 - protein coding gene BTB (POZ) domain containing 2
Tssr94588 10 80644573 to 80644590 17 + TSS region transcription start site region 94588
Tssr98480 10 80645537 to 80645549 12 - TSS region transcription start site region 98480
Cpgi1902 10 80655641 to 80657075 1434 CpG island CpG island 1902
Tssr98481 10 80656485 to 80656519 34 - TSS region transcription start site region 98481
Tssr98482 10 80656987 to 80657003 16 - TSS region transcription start site region 98482
Tssr98483 10 80657092 to 80657098 6 - TSS region transcription start site region 98483
Tssr98484 10 80657102 to 80657119 17 - TSS region transcription start site region 98484
Mknk2 10 80665318 to 80676293 10975 - protein coding gene MAP kinase-interacting serine/threonine kinase 2
Tssr98485 10 80665909 to 80665913 4 - TSS region transcription start site region 98485
Tssr98486 10 80666964 to 80666980 16 - TSS region transcription start site region 98486
Tssr98487 10 80668666 to 80668675 9 - TSS region transcription start site region 98487
Tssr98488 10 80668684 to 80668695 11 - TSS region transcription start site region 98488
Tssr98489 10 80668701 to 80668724 23 - TSS region transcription start site region 98489