Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:80489107-80589129

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi1885 10 80490140 to 80491718 1578 CpG island CpG island 1885
Cpgi1886 10 80494514 to 80496796 2282 CpG island CpG island 1886
Tssr94572 10 80494855 to 80494873 18 + TSS region transcription start site region 94572
Onecut3 10 80494906 to 80517266 22360 + protein coding gene one cut domain, family member 3
Cpgi1887 10 80502888 to 80503107 219 CpG island CpG island 1887
Cpgi1888 10 80503529 to 80503798 269 CpG island CpG island 1888
2610034O05Rik 10 80508769 to 80509623 854 + unclassified gene RIKEN cDNA 2610034O05 gene
Cpgi1889 10 80513890 to 80514200 310 CpG island CpG island 1889
Atp8b3 10 80519584 to 80539124 19540 - protein coding gene ATPase, class I, type 8B, member 3
Tssr98463 10 80520271 to 80520286 15 - TSS region transcription start site region 98463
Tssr98464 10 80522106 to 80522110 4 - TSS region transcription start site region 98464
Cpgi1890 10 80526641 to 80526888 247 CpG island CpG island 1890
Cpgi1891 10 80535321 to 80535546 225 CpG island CpG island 1891
Cpgi1892 10 80536237 to 80536556 319 CpG island CpG island 1892
Cpgi1893 10 80538933 to 80539368 435 CpG island CpG island 1893
Tssr98465 10 80539082 to 80539103 21 - TSS region transcription start site region 98465
Tssr98466 10 80539107 to 80539129 22 - TSS region transcription start site region 98466
Rexo1 10 80540922 to 80561560 20638 - protein coding gene REX1, RNA exonuclease 1
Tssr98467 10 80546658 to 80546672 14 - TSS region transcription start site region 98467
Tssr98468 10 80546778 to 80546835 57 - TSS region transcription start site region 98468
Tssr94573 10 80546907 to 80546914 7 + TSS region transcription start site region 94573
Gm31057 10 80547494 to 80555297 7803 + lncRNA gene predicted gene, 31057
Tssr98469 10 80548713 to 80548725 12 - TSS region transcription start site region 98469
Cpgi1894 10 80560732 to 80561946 1214 CpG island CpG island 1894
Tssr98470 10 80561528 to 80561557 29 - TSS region transcription start site region 98470
Klf16 10 80567121 to 80577296 10175 - protein coding gene Kruppel-like factor 16
Tssr98471 10 80567907 to 80567908 1 - TSS region transcription start site region 98471
Cpgi1895 10 80571137 to 80571459 322 CpG island CpG island 1895
Cpgi1896 10 80575908 to 80578692 2784 CpG island CpG island 1896
Tssr98472 10 80577255 to 80577274 19 - TSS region transcription start site region 98472
Tssr98473 10 80577285 to 80577327 42 - TSS region transcription start site region 98473
Gm26710 10 80578647 to 80580677 2030 + lincRNA gene predicted gene, 26710
Abhd17a 10 80583654 to 80590341 6687 - protein coding gene abhydrolase domain containing 17A
Cpgi1897 10 80583892 to 80584270 378 CpG island CpG island 1897
Cpgi1898 10 80586507 to 80587249 742 CpG island CpG island 1898
Tssr98474 10 80586548 to 80586587 39 - TSS region transcription start site region 98474
Tssr98475 10 80587297 to 80587316 19 - TSS region transcription start site region 98475
Gm29093 10 80587965 to 80589790 1825 - sense intronic lncRNA gene predicted gene 29093