Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:80423607-80823648

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcf3 10 80409514 to 80433647 24133 - protein coding gene transcription factor 3
Cpgi1881 10 80432812 to 80434253 1441 CpG island CpG island 1881
Tssr98458 10 80433384 to 80433418 34 - TSS region transcription start site region 98458
Tssr98459 10 80433583 to 80433594 11 - TSS region transcription start site region 98459
Tssr98460 10 80433602 to 80433613 11 - TSS region transcription start site region 98460
Tssr98461 10 80433615 to 80433655 40 - TSS region transcription start site region 98461
Tssr98462 10 80433945 to 80434001 56 - TSS region transcription start site region 98462
Cpgi1882 10 80446277 to 80446724 447 CpG island CpG island 1882
D10Mit21 10 80470562 to 80470690 128 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 21
Gm40716 10 80471409 to 80475380 3971 - lncRNA gene predicted gene, 40716
Cpgi1883 10 80471673 to 80472214 541 CpG island CpG island 1883
Cpgi1884 10 80474868 to 80475962 1094 CpG island CpG island 1884
Gm25044 10 80476352 to 80476455 103 + snRNA gene predicted gene, 25044
Cpgi1885 10 80490140 to 80491718 1578 CpG island CpG island 1885
Cpgi1886 10 80494514 to 80496796 2282 CpG island CpG island 1886
Tssr94572 10 80494855 to 80494873 18 + TSS region transcription start site region 94572
Onecut3 10 80494906 to 80517266 22360 + protein coding gene one cut domain, family member 3
Cpgi1887 10 80502888 to 80503107 219 CpG island CpG island 1887
Cpgi1888 10 80503529 to 80503798 269 CpG island CpG island 1888
2610034O05Rik 10 80508769 to 80509623 854 + unclassified gene RIKEN cDNA 2610034O05 gene
Cpgi1889 10 80513890 to 80514200 310 CpG island CpG island 1889
Atp8b3 10 80519584 to 80539124 19540 - protein coding gene ATPase, class I, type 8B, member 3
Tssr98463 10 80520271 to 80520286 15 - TSS region transcription start site region 98463
Tssr98464 10 80522106 to 80522110 4 - TSS region transcription start site region 98464
Cpgi1890 10 80526641 to 80526888 247 CpG island CpG island 1890
Cpgi1891 10 80535321 to 80535546 225 CpG island CpG island 1891
Cpgi1892 10 80536237 to 80536556 319 CpG island CpG island 1892
Cpgi1893 10 80538933 to 80539368 435 CpG island CpG island 1893
Tssr98465 10 80539082 to 80539103 21 - TSS region transcription start site region 98465
Tssr98466 10 80539107 to 80539129 22 - TSS region transcription start site region 98466
Rexo1 10 80540922 to 80561560 20638 - protein coding gene REX1, RNA exonuclease 1
Tssr98467 10 80546658 to 80546672 14 - TSS region transcription start site region 98467
Tssr98468 10 80546778 to 80546835 57 - TSS region transcription start site region 98468
Tssr94573 10 80546907 to 80546914 7 + TSS region transcription start site region 94573
Gm31057 10 80547494 to 80555297 7803 + lncRNA gene predicted gene, 31057
Tssr98469 10 80548713 to 80548725 12 - TSS region transcription start site region 98469
Cpgi1894 10 80560732 to 80561946 1214 CpG island CpG island 1894
Tssr98470 10 80561528 to 80561557 29 - TSS region transcription start site region 98470
Klf16 10 80567121 to 80577296 10175 - protein coding gene Kruppel-like factor 16
Tssr98471 10 80567907 to 80567908 1 - TSS region transcription start site region 98471
Cpgi1895 10 80571137 to 80571459 322 CpG island CpG island 1895
Cpgi1896 10 80575908 to 80578692 2784 CpG island CpG island 1896
Tssr98472 10 80577255 to 80577274 19 - TSS region transcription start site region 98472
Tssr98473 10 80577285 to 80577327 42 - TSS region transcription start site region 98473
Gm26710 10 80578647 to 80580677 2030 + lincRNA gene predicted gene, 26710
Abhd17a 10 80583654 to 80590341 6687 - protein coding gene abhydrolase domain containing 17A
Cpgi1897 10 80583892 to 80584270 378 CpG island CpG island 1897
Cpgi1898 10 80586507 to 80587249 742 CpG island CpG island 1898
Tssr98474 10 80586548 to 80586587 39 - TSS region transcription start site region 98474
Tssr98475 10 80587297 to 80587316 19 - TSS region transcription start site region 98475
Gm29093 10 80587965 to 80589790 1825 - sense intronic lncRNA gene predicted gene 29093
Tssr94574 10 80589381 to 80589387 6 + TSS region transcription start site region 94574
Cpgi1899 10 80589730 to 80590702 972 CpG island CpG island 1899
Tssr98476 10 80590292 to 80590329 37 - TSS region transcription start site region 98476
Cpgi1900 10 80602628 to 80603528 900 CpG island CpG island 1900
Tssr94575 10 80602865 to 80602904 39 + TSS region transcription start site region 94575
Adat3 10 80602880 to 80607654 4774 + protein coding gene adenosine deaminase, tRNA-specific 3
Scamp4 10 80602882 to 80615783 12901 + protein coding gene secretory carrier membrane protein 4
Tssr94576 10 80602905 to 80602912 7 + TSS region transcription start site region 94576
Tssr94577 10 80603201 to 80603259 58 + TSS region transcription start site region 94577
Tssr94578 10 80603282 to 80603297 15 + TSS region transcription start site region 94578
Gm49322 10 80606021 to 80615784 9763 + protein coding gene predicted gene, 49322
Tssr94579 10 80606570 to 80606601 31 + TSS region transcription start site region 94579
Tssr94580 10 80608849 to 80608854 5 + TSS region transcription start site region 94580
Mir6912 10 80609260 to 80609329 69 + miRNA gene microRNA 6912
Tssr94581 10 80609336 to 80609351 15 + TSS region transcription start site region 94581
Gm31298 10 80612960 to 80622610 9650 - lncRNA gene predicted gene, 31298
Tssr94582 10 80614949 to 80614979 30 + TSS region transcription start site region 94582
Tssr94583 10 80615391 to 80615435 44 + TSS region transcription start site region 94583
Cpgi1901 10 80621872 to 80623680 1808 CpG island CpG island 1901
Tssr94584 10 80622211 to 80622216 5 + TSS region transcription start site region 94584
Tssr98477 10 80622521 to 80622526 5 - TSS region transcription start site region 98477
Tssr98478 10 80622594 to 80622609 15 - TSS region transcription start site region 98478
Tssr94585 10 80622677 to 80622758 81 + TSS region transcription start site region 94585
Csnk1g2 10 80622838 to 80640749 17911 + protein coding gene casein kinase 1, gamma 2
Tssr98479 10 80623607 to 80623648 41 - TSS region transcription start site region 98479
Tssr94586 10 80629646 to 80629655 9 + TSS region transcription start site region 94586
Tssr94587 10 80629671 to 80629687 16 + TSS region transcription start site region 94587
Btbd2 10 80642617 to 80657071 14454 - protein coding gene BTB (POZ) domain containing 2
Tssr94588 10 80644573 to 80644590 17 + TSS region transcription start site region 94588
Tssr98480 10 80645537 to 80645549 12 - TSS region transcription start site region 98480
Cpgi1902 10 80655641 to 80657075 1434 CpG island CpG island 1902
Tssr98481 10 80656485 to 80656519 34 - TSS region transcription start site region 98481
Tssr98482 10 80656987 to 80657003 16 - TSS region transcription start site region 98482
Tssr98483 10 80657092 to 80657098 6 - TSS region transcription start site region 98483
Tssr98484 10 80657102 to 80657119 17 - TSS region transcription start site region 98484
Mknk2 10 80665318 to 80676293 10975 - protein coding gene MAP kinase-interacting serine/threonine kinase 2
Tssr98485 10 80665909 to 80665913 4 - TSS region transcription start site region 98485
Tssr98486 10 80666964 to 80666980 16 - TSS region transcription start site region 98486
Tssr98487 10 80668666 to 80668675 9 - TSS region transcription start site region 98487
Tssr98488 10 80668684 to 80668695 11 - TSS region transcription start site region 98488
Tssr98489 10 80668701 to 80668724 23 - TSS region transcription start site region 98489
Cpgi1903 10 80675446 to 80677148 1702 CpG island CpG island 1903
Tssr98490 10 80676290 to 80676295 5 - TSS region transcription start site region 98490
Tssr94589 10 80676778 to 80676799 21 + TSS region transcription start site region 94589
Tssr94590 10 80677408 to 80677419 11 + TSS region transcription start site region 94590
Tssr98491 10 80678106 to 80678129 23 - TSS region transcription start site region 98491
Gm26541 10 80681838 to 80687176 5338 + lincRNA gene predicted gene, 26541
Mob3a 10 80685253 to 80701820 16567 - protein coding gene MOB kinase activator 3A
Tssr94591 10 80692695 to 80692721 26 + TSS region transcription start site region 94591
Tssr94592 10 80695571 to 80695589 18 + TSS region transcription start site region 94592
Tssr94593 10 80696405 to 80696408 3 + TSS region transcription start site region 94593
Cpgi1904 10 80701577 to 80703182 1605 CpG island CpG island 1904
Tssr98492 10 80701811 to 80701878 67 - TSS region transcription start site region 98492
Tssr98493 10 80701879 to 80701899 20 - TSS region transcription start site region 98493
Tssr98494 10 80701936 to 80701986 50 - TSS region transcription start site region 98494
Izumo4 10 80702184 to 80705373 3189 + protein coding gene IZUMO family member 4
Tssr94594 10 80702282 to 80702313 31 + TSS region transcription start site region 94594
Tssr94595 10 80702649 to 80702761 112 + TSS region transcription start site region 94595
Ap3d1 10 80706956 to 80742264 35308 - protein coding gene adaptor-related protein complex 3, delta 1 subunit
Tssr94596 10 80712756 to 80712792 36 + TSS region transcription start site region 94596
Tssr98495 10 80713995 to 80714008 13 - TSS region transcription start site region 98495
Tssr98496 10 80714014 to 80714033 19 - TSS region transcription start site region 98496
Tssr98497 10 80714048 to 80714067 19 - TSS region transcription start site region 98497
Tssr98498 10 80723386 to 80723391 5 - TSS region transcription start site region 98498
Cpgi1905 10 80741639 to 80742561 922 CpG island CpG island 1905
Tssr98499 10 80742222 to 80742280 58 - TSS region transcription start site region 98499
Tssr3279 10 80752343 to 80752362 19 + TSS region transcription start site region 3279
Tssr94597 10 80752571 to 80752607 36 + TSS region transcription start site region 94597
Tssr98500 10 80754666 to 80754671 5 - TSS region transcription start site region 98500
Cpgi1906 10 80754854 to 80756356 1502 CpG island CpG island 1906
Tssr98501 10 80754914 to 80754938 24 - TSS region transcription start site region 98501
Tssr94598 10 80755123 to 80755132 9 + TSS region transcription start site region 94598
Tssr94599 10 80755196 to 80755239 43 + TSS region transcription start site region 94599
Dot1l 10 80755206 to 80795461 40255 + protein coding gene DOT1-like, histone H3 methyltransferase (S. cerevisiae)
Tssr94600 10 80755240 to 80755251 11 + TSS region transcription start site region 94600
Tssr94601 10 80755292 to 80755303 11 + TSS region transcription start site region 94601
Tssr94602 10 80755390 to 80755399 9 + TSS region transcription start site region 94602
Tssr98502 10 80756959 to 80756973 14 - TSS region transcription start site region 98502
Tssr98503 10 80756993 to 80757006 13 - TSS region transcription start site region 98503
Tssr98504 10 80757127 to 80757148 21 - TSS region transcription start site region 98504
Tssr98505 10 80757170 to 80757210 40 - TSS region transcription start site region 98505
Tssr94603 10 80763883 to 80763889 6 + TSS region transcription start site region 94603
Tssr94604 10 80765656 to 80765660 4 + TSS region transcription start site region 94604
Gm17151 10 80766859 to 80768987 2128 - antisense lncRNA gene predicted gene 17151
Tssr94605 10 80780809 to 80780813 4 + TSS region transcription start site region 94605
Cpgi1907 10 80791772 to 80792719 947 CpG island CpG island 1907
Plekhj1 10 80796099 to 80798626 2527 - protein coding gene pleckstrin homology domain containing, family J member 1
Tssr98506 10 80796359 to 80796373 14 - TSS region transcription start site region 98506
Cpgi1908 10 80797482 to 80799537 2055 CpG island CpG island 1908
Tssr98507 10 80797861 to 80797891 30 - TSS region transcription start site region 98507
Tssr98508 10 80797919 to 80797950 31 - TSS region transcription start site region 98508
Tssr94606 10 80797953 to 80797967 14 + TSS region transcription start site region 94606
Tssr98509 10 80797969 to 80797990 21 - TSS region transcription start site region 98509
Tssr98510 10 80797992 to 80798003 11 - TSS region transcription start site region 98510
Tssr94607 10 80798031 to 80798110 79 + TSS region transcription start site region 94607
Tssr98511 10 80798191 to 80798216 25 - TSS region transcription start site region 98511
Tssr98512 10 80798220 to 80798299 79 - TSS region transcription start site region 98512
Tssr98513 10 80798476 to 80798576 100 - TSS region transcription start site region 98513
Sf3a2 10 80798589 to 80804924 6335 + protein coding gene splicing factor 3a, subunit 2
Tssr94608 10 80798613 to 80798616 3 + TSS region transcription start site region 94608
Tssr94609 10 80798630 to 80798642 12 + TSS region transcription start site region 94609
Tssr94610 10 80798652 to 80798757 105 + TSS region transcription start site region 94610
Tssr98514 10 80798855 to 80798898 43 - TSS region transcription start site region 98514
Tssr94611 10 80798902 to 80798952 50 + TSS region transcription start site region 94611
Tssr94612 10 80802398 to 80802403 5 + TSS region transcription start site region 94612
Tssr94613 10 80802807 to 80802822 15 + TSS region transcription start site region 94613
Tssr94614 10 80803281 to 80803292 11 + TSS region transcription start site region 94614
Tssr94615 10 80803601 to 80803617 16 + TSS region transcription start site region 94615
Tssr94616 10 80803645 to 80803660 15 + TSS region transcription start site region 94616
Tssr94617 10 80803663 to 80803682 19 + TSS region transcription start site region 94617
Tssr98515 10 80804027 to 80804071 44 - TSS region transcription start site region 98515
Tssr94618 10 80804037 to 80804063 26 + TSS region transcription start site region 94618
Tssr94619 10 80804068 to 80804090 22 + TSS region transcription start site region 94619
Tssr94620 10 80804100 to 80804118 18 + TSS region transcription start site region 94620
Tssr94621 10 80804124 to 80804150 26 + TSS region transcription start site region 94621
Tssr94622 10 80804211 to 80804227 16 + TSS region transcription start site region 94622
Tssr94623 10 80804720 to 80804740 20 + TSS region transcription start site region 94623
Tssr94624 10 80805233 to 80805249 16 + TSS region transcription start site region 94624
Amh 10 80805243 to 80807648 2405 + protein coding gene anti-Mullerian hormone
Tssr94625 10 80806128 to 80806141 13 + TSS region transcription start site region 94625
Cpgi1909 10 80806378 to 80807864 1486 CpG island CpG island 1909
Tssr94626 10 80806399 to 80806410 11 + TSS region transcription start site region 94626
Tssr94627 10 80806830 to 80806840 10 + TSS region transcription start site region 94627
Tssr98516 10 80807633 to 80807660 27 - TSS region transcription start site region 98516
Tssr94628 10 80807675 to 80807699 24 + TSS region transcription start site region 94628
Cpgi1910 10 80808167 to 80809179 1012 CpG island CpG island 1910
Jsrp1 10 80808496 to 80813498 5002 - protein coding gene junctional sarcoplasmic reticulum protein 1
Cpgi1911 10 80810159 to 80810580 421 CpG island CpG island 1911
Tssr98517 10 80812563 to 80812584 21 - TSS region transcription start site region 98517
Tssr98518 10 80813486 to 80813533 47 - TSS region transcription start site region 98518
Tssr98519 10 80818514 to 80818518 4 - TSS region transcription start site region 98519