Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:80259729-80409746

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gamt 10 80258151 to 80261012 2861 - protein coding gene guanidinoacetate methyltransferase
Cpgi1862 10 80260450 to 80261537 1087 CpG island CpG island 1862
Tssr98416 10 80260903 to 80260945 42 - TSS region transcription start site region 98416
Tssr98417 10 80260959 to 80260975 16 - TSS region transcription start site region 98417
Tssr98418 10 80261004 to 80261013 9 - TSS region transcription start site region 98418
Tssr98419 10 80261015 to 80261026 11 - TSS region transcription start site region 98419
Tssr94530 10 80261457 to 80261502 45 + TSS region transcription start site region 94530
Dazap1 10 80261486 to 80288408 26922 + protein coding gene DAZ associated protein 1
Cpgi1863 10 80264520 to 80265369 849 CpG island CpG island 1863
Tssr94531 10 80264942 to 80265033 91 + TSS region transcription start site region 94531
Tssr94532 10 80265035 to 80265086 51 + TSS region transcription start site region 94532
Tssr94533 10 80265087 to 80265154 67 + TSS region transcription start site region 94533
Tssr94534 10 80276731 to 80276735 4 + TSS region transcription start site region 94534
Mir6911 10 80278164 to 80278232 68 + miRNA gene microRNA 6911
Tssr94535 10 80280406 to 80280409 3 + TSS region transcription start site region 94535
Tssr94536 10 80280928 to 80280976 48 + TSS region transcription start site region 94536
Gm15122 10 80282444 to 80283006 562 - antisense lncRNA gene predicted gene 15122
Tssr94537 10 80283021 to 80283035 14 + TSS region transcription start site region 94537
Tssr94538 10 80284490 to 80284507 17 + TSS region transcription start site region 94538
Tssr94539 10 80285253 to 80285278 25 + TSS region transcription start site region 94539
Tssr94540 10 80285325 to 80285354 29 + TSS region transcription start site region 94540
Cpgi1864 10 80292120 to 80293028 908 CpG island CpG island 1864
Tssr94541 10 80292414 to 80292436 22 + TSS region transcription start site region 94541
Tssr94542 10 80292453 to 80292495 42 + TSS region transcription start site region 94542
Rps15 10 80292453 to 80294114 1661 + protein coding gene ribosomal protein S15
Gm30682 10 80294203 to 80296396 2193 - lncRNA gene predicted gene, 30682
Cpgi1865 10 80295893 to 80296307 414 CpG island CpG island 1865
Tssr94543 10 80295930 to 80296003 73 + TSS region transcription start site region 94543
Apc2 10 80295977 to 80318263 22286 + protein coding gene adenomatosis polyposis coli 2
Cpgi1866 10 80298926 to 80299403 477 CpG island CpG island 1866
Tssr94544 10 80299084 to 80299126 42 + TSS region transcription start site region 94544
Tssr94545 10 80299132 to 80299162 30 + TSS region transcription start site region 94545
Tssr94546 10 80299170 to 80299173 3 + TSS region transcription start site region 94546
Tssr94547 10 80300997 to 80301050 53 + TSS region transcription start site region 94547
Cpgi1867 10 80304676 to 80305196 520 CpG island CpG island 1867
Tssr94548 10 80308279 to 80308283 4 + TSS region transcription start site region 94548
Cpgi1868 10 80311836 to 80313353 1517 CpG island CpG island 1868
Cpgi1869 10 80314988 to 80315728 740 CpG island CpG island 1869
2310011J03Rik 10 80318254 to 80320537 2283 - protein coding gene RIKEN cDNA 2310011J03 gene
Cpgi1870 10 80320118 to 80320821 703 CpG island CpG island 1870
Tssr98420 10 80320506 to 80320553 47 - TSS region transcription start site region 98420
Tssr98421 10 80320555 to 80320560 5 - TSS region transcription start site region 98421
Pcsk4 10 80321283 to 80329498 8215 - protein coding gene proprotein convertase subtilisin/kexin type 4
Cpgi1871 10 80322780 to 80324023 1243 CpG island CpG island 1871
Tssr98422 10 80323036 to 80323046 10 - TSS region transcription start site region 98422
Tssr98423 10 80323064 to 80323088 24 - TSS region transcription start site region 98423
Tssr98424 10 80323121 to 80323133 12 - TSS region transcription start site region 98424
Tssr98425 10 80323379 to 80323428 49 - TSS region transcription start site region 98425
Tssr94549 10 80323503 to 80323521 18 + TSS region transcription start site region 94549
Tssr98426 10 80323756 to 80323795 39 - TSS region transcription start site region 98426
Tssr98427 10 80329404 to 80329421 17 - TSS region transcription start site region 98427
Tssr98428 10 80329426 to 80329482 56 - TSS region transcription start site region 98428
Tssr94550 10 80329502 to 80329508 6 + TSS region transcription start site region 94550
Tssr98429 10 80329515 to 80329530 15 - TSS region transcription start site region 98429
Tssr94551 10 80329543 to 80329555 12 + TSS region transcription start site region 94551
Cpgi1872 10 80329612 to 80330714 1102 CpG island CpG island 1872
Tssr94552 10 80329961 to 80329987 26 + TSS region transcription start site region 94552
Tssr94553 10 80329988 to 80330009 21 + TSS region transcription start site region 94553
Reep6 10 80330003 to 80336441 6438 + protein coding gene receptor accessory protein 6
Tssr3278 10 80330112 to 80330119 7 + TSS region transcription start site region 3278
Tssr94554 10 80330127 to 80330211 84 + TSS region transcription start site region 94554
Tssr94555 10 80330297 to 80330310 13 + TSS region transcription start site region 94555
Tssr94556 10 80334004 to 80334018 14 + TSS region transcription start site region 94556
Tssr94557 10 80334729 to 80334746 17 + TSS region transcription start site region 94557
Tssr94558 10 80335102 to 80335115 13 + TSS region transcription start site region 94558
Tssr94559 10 80335156 to 80335179 23 + TSS region transcription start site region 94559
Tssr94560 10 80335181 to 80335283 102 + TSS region transcription start site region 94560
Tssr98430 10 80335334 to 80335370 36 - TSS region transcription start site region 98430
Tssr94561 10 80335498 to 80335509 11 + TSS region transcription start site region 94561
Tssr94562 10 80335921 to 80335939 18 + TSS region transcription start site region 94562
Tssr94563 10 80335942 to 80335958 16 + TSS region transcription start site region 94563
Tssr94564 10 80336020 to 80336031 11 + TSS region transcription start site region 94564
Tssr94565 10 80336062 to 80336093 31 + TSS region transcription start site region 94565
Tssr94566 10 80336109 to 80336122 13 + TSS region transcription start site region 94566
Tssr94567 10 80336141 to 80336162 21 + TSS region transcription start site region 94567
Tssr98431 10 80336361 to 80336372 11 - TSS region transcription start site region 98431
Adamtsl5 10 80339793 to 80349039 9246 - protein coding gene ADAMTS-like 5
Cpgi1873 10 80341191 to 80343148 1957 CpG island CpG island 1873
Tssr98432 10 80345214 to 80345260 46 - TSS region transcription start site region 98432
Cpgi1874 10 80348045 to 80349419 1374 CpG island CpG island 1874
Tssr98433 10 80348357 to 80348367 10 - TSS region transcription start site region 98433
Tssr98434 10 80348405 to 80348418 13 - TSS region transcription start site region 98434
Tssr98435 10 80348432 to 80348458 26 - TSS region transcription start site region 98435
Tssr98436 10 80348587 to 80348611 24 - TSS region transcription start site region 98436
Tssr98437 10 80348617 to 80348663 46 - TSS region transcription start site region 98437
Tssr98438 10 80348999 to 80349031 32 - TSS region transcription start site region 98438
Cpgi1875 10 80355873 to 80357250 1377 CpG island CpG island 1875
Plk5 10 80356459 to 80365489 9030 + protein coding gene polo like kinase 5
Tssr94568 10 80356480 to 80356494 14 + TSS region transcription start site region 94568
Cpgi1876 10 80357805 to 80358445 640 CpG island CpG island 1876
Gm15123 10 80371898 to 80372432 534 + antisense lncRNA gene predicted gene 15123
Gm15124 10 80371955 to 80373216 1261 + antisense lncRNA gene predicted gene 15124
Gm47793 10 80377167 to 80377552 385 - pseudogene predicted gene, 47793
Mex3d 10 80380355 to 80387651 7296 - protein coding gene mex3 RNA binding family member D
Gm22721 10 80382302 to 80382384 82 + miRNA gene predicted gene, 22721
Cpgi1877 10 80386265 to 80388497 2232 CpG island CpG island 1877
Tssr98439 10 80387586 to 80387630 44 - TSS region transcription start site region 98439
Tssr98440 10 80387642 to 80387666 24 - TSS region transcription start site region 98440
Gm30823 10 80387760 to 80395067 7307 + lncRNA gene predicted gene, 30823
Mbd3 10 80392539 to 80399531 6992 - protein coding gene methyl-CpG binding domain protein 3
Tssr98441 10 80395357 to 80395405 48 - TSS region transcription start site region 98441
Tssr98442 10 80398273 to 80398277 4 - TSS region transcription start site region 98442
Cpgi1878 10 80398621 to 80400233 1612 CpG island CpG island 1878
Tssr94569 10 80398966 to 80399035 69 + TSS region transcription start site region 94569
Tssr94570 10 80399037 to 80399049 12 + TSS region transcription start site region 94570
Tssr98443 10 80399344 to 80399384 40 - TSS region transcription start site region 98443
Tssr98444 10 80399389 to 80399428 39 - TSS region transcription start site region 98444
Tssr98445 10 80399430 to 80399476 46 - TSS region transcription start site region 98445
Tssr98446 10 80399478 to 80399516 38 - TSS region transcription start site region 98446
Tssr98447 10 80399532 to 80399547 15 - TSS region transcription start site region 98447
Tssr98448 10 80399552 to 80399563 11 - TSS region transcription start site region 98448
Tssr94571 10 80399822 to 80399848 26 + TSS region transcription start site region 94571
3300002P09Rik 10 80400644 to 80401674 1030 unclassified gene RIKEN cDNA 3300002P09 gene
Uqcr11 10 80402997 to 80406821 3824 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit XI
Cpgi1879 10 80406239 to 80407027 788 CpG island CpG island 1879
Tssr98449 10 80406792 to 80406809 17 - TSS region transcription start site region 98449
Tssr98450 10 80406811 to 80406819 8 - TSS region transcription start site region 98450
Tcf3 10 80409514 to 80433647 24133 - protein coding gene transcription factor 3