Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:80173954-80324745

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1600002K03Rik 10 80172944 to 80175119 2175 + protein coding gene RIKEN cDNA 1600002K03 gene
Cpgi1856 10 80178845 to 80180628 1783 CpG island CpG island 1856
Tssr94519 10 80179431 to 80179464 33 + TSS region transcription start site region 94519
Efna2 10 80179482 to 80190010 10528 + protein coding gene ephrin A2
Tssr94520 10 80179493 to 80179531 38 + TSS region transcription start site region 94520
Tssr94521 10 80179688 to 80179755 67 + TSS region transcription start site region 94521
Cpgi1857 10 80186643 to 80187042 399 CpG island CpG island 1857
Cpgi1858 10 80190049 to 80191303 1254 CpG island CpG island 1858
Cpgi1859 10 80208854 to 80209141 287 CpG island CpG island 1859
Cpgi1860 10 80226196 to 80227117 921 CpG island CpG island 1860
Pwwp3a 10 80226434 to 80243903 17469 + protein coding gene PWWP domain containing 3A, DNA repair factor
Tssr94522 10 80226644 to 80226752 108 + TSS region transcription start site region 94522
Tssr94523 10 80226755 to 80226762 7 + TSS region transcription start site region 94523
Tssr94524 10 80226765 to 80226783 18 + TSS region transcription start site region 94524
Tssr94525 10 80226792 to 80226799 7 + TSS region transcription start site region 94525
Tssr3277 10 80228322 to 80228352 30 + TSS region transcription start site region 3277
D10Mit226 10 80247709 to 80247802 93 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 226
Cpgi1861 10 80248954 to 80249745 791 CpG island CpG island 1861
n-TFgaa3 10 80248964 to 80249036 72 - tRNA gene nuclear encoded tRNA pheylalanine 3 (anticodon GAA)
Tssr94526 10 80249106 to 80249124 18 + TSS region transcription start site region 94526
Ndufs7 10 80249121 to 80256793 7672 + protein coding gene NADH:ubiquinone oxidoreductase core subunit S7
Tssr94527 10 80249131 to 80249154 23 + TSS region transcription start site region 94527
n-TNgtt7 10 80249159 to 80249232 73 + tRNA gene nuclear encoded tRNA asparagine 7 (anticodon GTT)
Tssr94528 10 80249441 to 80249468 27 + TSS region transcription start site region 94528
Tssr94529 10 80253684 to 80253720 36 + TSS region transcription start site region 94529
Gamt 10 80258151 to 80261012 2861 - protein coding gene guanidinoacetate methyltransferase
Tssr98415 10 80259016 to 80259021 5 - TSS region transcription start site region 98415
Cpgi1862 10 80260450 to 80261537 1087 CpG island CpG island 1862
Tssr98416 10 80260903 to 80260945 42 - TSS region transcription start site region 98416
Tssr98417 10 80260959 to 80260975 16 - TSS region transcription start site region 98417
Tssr98418 10 80261004 to 80261013 9 - TSS region transcription start site region 98418
Tssr98419 10 80261015 to 80261026 11 - TSS region transcription start site region 98419
Tssr94530 10 80261457 to 80261502 45 + TSS region transcription start site region 94530
Dazap1 10 80261486 to 80288408 26922 + protein coding gene DAZ associated protein 1
Cpgi1863 10 80264520 to 80265369 849 CpG island CpG island 1863
Tssr94531 10 80264942 to 80265033 91 + TSS region transcription start site region 94531
Tssr94532 10 80265035 to 80265086 51 + TSS region transcription start site region 94532
Tssr94533 10 80265087 to 80265154 67 + TSS region transcription start site region 94533
Tssr94534 10 80276731 to 80276735 4 + TSS region transcription start site region 94534
Mir6911 10 80278164 to 80278232 68 + miRNA gene microRNA 6911
Tssr94535 10 80280406 to 80280409 3 + TSS region transcription start site region 94535
Tssr94536 10 80280928 to 80280976 48 + TSS region transcription start site region 94536
Gm15122 10 80282444 to 80283006 562 - antisense lncRNA gene predicted gene 15122
Tssr94537 10 80283021 to 80283035 14 + TSS region transcription start site region 94537
Tssr94538 10 80284490 to 80284507 17 + TSS region transcription start site region 94538
Tssr94539 10 80285253 to 80285278 25 + TSS region transcription start site region 94539
Tssr94540 10 80285325 to 80285354 29 + TSS region transcription start site region 94540
Cpgi1864 10 80292120 to 80293028 908 CpG island CpG island 1864
Tssr94541 10 80292414 to 80292436 22 + TSS region transcription start site region 94541
Tssr94542 10 80292453 to 80292495 42 + TSS region transcription start site region 94542
Rps15 10 80292453 to 80294114 1661 + protein coding gene ribosomal protein S15
Gm30682 10 80294203 to 80296396 2193 - lncRNA gene predicted gene, 30682
Cpgi1865 10 80295893 to 80296307 414 CpG island CpG island 1865
Tssr94543 10 80295930 to 80296003 73 + TSS region transcription start site region 94543
Apc2 10 80295977 to 80318263 22286 + protein coding gene adenomatosis polyposis coli 2
Cpgi1866 10 80298926 to 80299403 477 CpG island CpG island 1866
Tssr94544 10 80299084 to 80299126 42 + TSS region transcription start site region 94544
Tssr94545 10 80299132 to 80299162 30 + TSS region transcription start site region 94545
Tssr94546 10 80299170 to 80299173 3 + TSS region transcription start site region 94546
Tssr94547 10 80300997 to 80301050 53 + TSS region transcription start site region 94547
Cpgi1867 10 80304676 to 80305196 520 CpG island CpG island 1867
Tssr94548 10 80308279 to 80308283 4 + TSS region transcription start site region 94548
Cpgi1868 10 80311836 to 80313353 1517 CpG island CpG island 1868
Cpgi1869 10 80314988 to 80315728 740 CpG island CpG island 1869
2310011J03Rik 10 80318254 to 80320537 2283 - protein coding gene RIKEN cDNA 2310011J03 gene
Cpgi1870 10 80320118 to 80320821 703 CpG island CpG island 1870
Tssr98420 10 80320506 to 80320553 47 - TSS region transcription start site region 98420
Tssr98421 10 80320555 to 80320560 5 - TSS region transcription start site region 98421
Pcsk4 10 80321283 to 80329498 8215 - protein coding gene proprotein convertase subtilisin/kexin type 4
Cpgi1871 10 80322780 to 80324023 1243 CpG island CpG island 1871
Tssr98422 10 80323036 to 80323046 10 - TSS region transcription start site region 98422
Tssr98423 10 80323064 to 80323088 24 - TSS region transcription start site region 98423
Tssr98424 10 80323121 to 80323133 12 - TSS region transcription start site region 98424
Tssr98425 10 80323379 to 80323428 49 - TSS region transcription start site region 98425
Tssr94549 10 80323503 to 80323521 18 + TSS region transcription start site region 94549
Tssr98426 10 80323756 to 80323795 39 - TSS region transcription start site region 98426