Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:79952247-80142264

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arid3a 10 79927043 to 79955018 27975 + protein coding gene AT rich interactive domain 3A (BRIGHT-like)
Tssr94439 10 79952299 to 79952316 17 + TSS region transcription start site region 94439
Tssr94440 10 79952406 to 79952413 7 + TSS region transcription start site region 94440
Tssr94441 10 79954401 to 79954445 44 + TSS region transcription start site region 94441
Cpgi1826 10 79958252 to 79958550 298 CpG island CpG island 1826
Cpgi1827 10 79959830 to 79960800 970 CpG island CpG island 1827
Wdr18 10 79959989 to 79969247 9258 + protein coding gene WD repeat domain 18
Tssr94442 10 79960145 to 79960162 17 + TSS region transcription start site region 94442
Tssr98370 10 79961319 to 79961342 23 - TSS region transcription start site region 98370
D10Jhu78 10 79966796 to 79966978 182 DNA segment DNA segment, Chr 10, Johns Hopkins University 78
Tssr94443 10 79967304 to 79967343 39 + TSS region transcription start site region 94443
Cpgi1828 10 79970647 to 79971723 1076 CpG island CpG island 1828
Grin3b 10 79970715 to 79977190 6475 + protein coding gene glutamate receptor, ionotropic, NMDA3B
Cpgi1829 10 79975578 to 79977763 2185 CpG island CpG island 1829
Tmem259 10 79977120 to 79984330 7210 - protein coding gene transmembrane protein 259
Cpgi1830 10 79983614 to 79985254 1640 CpG island CpG island 1830
Tssr98371 10 79983970 to 79984016 46 - TSS region transcription start site region 98371
Tssr98372 10 79984227 to 79984319 92 - TSS region transcription start site region 98372
Tssr3276 10 79984656 to 79984659 3 + TSS region transcription start site region 3276
Gm26243 10 79985506 to 79985612 106 + snRNA gene predicted gene, 26243
Cpgi1831 10 79985700 to 79985896 196 CpG island CpG island 1831
Cpgi1832 10 79988360 to 79989329 969 CpG island CpG island 1832
Tssr94444 10 79988589 to 79988683 94 + TSS region transcription start site region 94444
Cnn2 10 79988600 to 79995400 6800 + protein coding gene calponin 2
Cpgi1833 10 79990894 to 79991334 440 CpG island CpG island 1833
Tssr94445 10 79991574 to 79991583 9 + TSS region transcription start site region 94445
Tssr94446 10 79994845 to 79994858 13 + TSS region transcription start site region 94446
Tssr94447 10 79995018 to 79995035 17 + TSS region transcription start site region 94447
Tssr94448 10 79995078 to 79995090 12 + TSS region transcription start site region 94448
Tssr94449 10 79995258 to 79995302 44 + TSS region transcription start site region 94449
Tssr98373 10 79995319 to 79995348 29 - TSS region transcription start site region 98373
Tssr98374 10 79995383 to 79995402 19 - TSS region transcription start site region 98374
Cpgi1834 10 79996384 to 79996763 379 CpG island CpG island 1834
Tssr94450 10 79996455 to 79996475 20 + TSS region transcription start site region 94450
Tssr94451 10 79996479 to 79996505 26 + TSS region transcription start site region 94451
Abca7 10 79996494 to 80015572 19078 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 7
Tssr94452 10 79996515 to 79996524 9 + TSS region transcription start site region 94452
Tssr94453 10 79996542 to 79996551 9 + TSS region transcription start site region 94453
Cpgi1835 10 79997223 to 79997891 668 CpG island CpG island 1835
Tssr94454 10 79997463 to 79997501 38 + TSS region transcription start site region 94454
Cpgi1836 10 80002623 to 80003010 387 CpG island CpG island 1836
Cpgi1837 10 80013791 to 80014696 905 CpG island CpG island 1837
Tssr94455 10 80015789 to 80015838 49 + TSS region transcription start site region 94455
Tssr94456 10 80016662 to 80016677 15 + TSS region transcription start site region 94456
Arhgap45 10 80016672 to 80031471 14799 + protein coding gene Rho GTPase activating protein 45
Tssr94457 10 80016696 to 80016733 37 + TSS region transcription start site region 94457
Tssr94458 10 80016735 to 80016758 23 + TSS region transcription start site region 94458
Tssr94459 10 80016761 to 80016768 7 + TSS region transcription start site region 94459
Tssr94460 10 80016901 to 80016905 4 + TSS region transcription start site region 94460
Tssr94461 10 80016969 to 80016978 9 + TSS region transcription start site region 94461
Tssr94462 10 80017601 to 80017639 38 + TSS region transcription start site region 94462
Tssr94463 10 80017667 to 80017687 20 + TSS region transcription start site region 94463
Tssr94464 10 80017692 to 80017709 17 + TSS region transcription start site region 94464
Tssr94465 10 80017860 to 80017905 45 + TSS region transcription start site region 94465
Tssr94466 10 80017942 to 80017953 11 + TSS region transcription start site region 94466
Tssr94467 10 80018099 to 80018111 12 + TSS region transcription start site region 94467
Tssr98375 10 80018841 to 80018861 20 - TSS region transcription start site region 98375
Tssr94468 10 80019356 to 80019359 3 + TSS region transcription start site region 94468
Tssr94469 10 80019621 to 80019690 69 + TSS region transcription start site region 94469
Tssr98376 10 80024295 to 80024318 23 - TSS region transcription start site region 98376
Cpgi1838 10 80026092 to 80026420 328 CpG island CpG island 1838
Tssr98377 10 80031460 to 80031470 10 - TSS region transcription start site region 98377
Polr2e 10 80035953 to 80039659 3706 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide E
Tssr98378 10 80036755 to 80036766 11 - TSS region transcription start site region 98378
Cpgi1839 10 80039285 to 80040071 786 CpG island CpG island 1839
Tssr98379 10 80039645 to 80039672 27 - TSS region transcription start site region 98379
Tssr98380 10 80039674 to 80039724 50 - TSS region transcription start site region 98380
Tssr94470 10 80047009 to 80047030 21 + TSS region transcription start site region 94470
Gpx4 10 80047166 to 80056439 9273 + protein coding gene glutathione peroxidase 4
Tssr94471 10 80047247 to 80047264 17 + TSS region transcription start site region 94471
Tssr94472 10 80053187 to 80053190 3 + TSS region transcription start site region 94472
Cpgi1840 10 80053250 to 80054871 1621 CpG island CpG island 1840
Tssr98381 10 80053359 to 80053414 55 - TSS region transcription start site region 98381
Tssr94473 10 80053559 to 80053570 11 + TSS region transcription start site region 94473
Tssr94474 10 80053623 to 80053665 42 + TSS region transcription start site region 94474
Tssr94475 10 80053966 to 80053984 18 + TSS region transcription start site region 94475
Tssr94476 10 80053997 to 80054026 29 + TSS region transcription start site region 94476
Tssr94477 10 80054029 to 80054043 14 + TSS region transcription start site region 94477
Tssr94478 10 80054046 to 80054053 7 + TSS region transcription start site region 94478
Sbno2 10 80056992 to 80105571 48579 - protein coding gene strawberry notch 2
Gm46237 10 80073893 to 80081724 7831 + lncRNA gene predicted gene, 46237
Tssr98382 10 80075050 to 80075090 40 - TSS region transcription start site region 98382
Cpgi1841 10 80075085 to 80075468 383 CpG island CpG island 1841
Tssr98383 10 80075275 to 80075301 26 - TSS region transcription start site region 98383
Tssr98384 10 80075360 to 80075377 17 - TSS region transcription start site region 98384
Tssr98385 10 80075378 to 80075407 29 - TSS region transcription start site region 98385
Tssr98386 10 80075411 to 80075453 42 - TSS region transcription start site region 98386
Tssr98387 10 80075469 to 80075478 9 - TSS region transcription start site region 98387
Tssr94479 10 80075582 to 80075605 23 + TSS region transcription start site region 94479
Tssr98388 10 80080524 to 80080531 7 - TSS region transcription start site region 98388
Tssr98389 10 80098543 to 80098546 3 - TSS region transcription start site region 98389
Tssr98390 10 80101125 to 80101139 14 - TSS region transcription start site region 98390
Tssr98391 10 80101154 to 80101172 18 - TSS region transcription start site region 98391
Cpgi1842 10 80102185 to 80102957 772 CpG island CpG island 1842
Tssr98392 10 80102640 to 80102651 11 - TSS region transcription start site region 98392
Tssr98393 10 80102653 to 80102728 75 - TSS region transcription start site region 98393
Tssr98394 10 80104301 to 80104312 11 - TSS region transcription start site region 98394
Tssr98395 10 80104334 to 80104376 42 - TSS region transcription start site region 98395
Tssr98396 10 80105566 to 80105577 11 - TSS region transcription start site region 98396
Tssr98397 10 80105586 to 80105617 31 - TSS region transcription start site region 98397
Tssr98398 10 80105668 to 80105704 36 - TSS region transcription start site region 98398
Tssr98399 10 80106069 to 80106121 52 - TSS region transcription start site region 98399
Cpgi1843 10 80114752 to 80117473 2721 CpG island CpG island 1843
Tssr94480 10 80115779 to 80115824 45 + TSS region transcription start site region 94480
Stk11 10 80115803 to 80130682 14879 + protein coding gene serine/threonine kinase 11
Tssr94481 10 80115863 to 80115886 23 + TSS region transcription start site region 94481
Tssr94482 10 80116233 to 80116266 33 + TSS region transcription start site region 94482
Tssr94483 10 80116267 to 80116278 11 + TSS region transcription start site region 94483
Tssr94484 10 80116379 to 80116389 10 + TSS region transcription start site region 94484
Tssr98400 10 80117115 to 80117126 11 - TSS region transcription start site region 98400
Tssr94485 10 80117295 to 80117311 16 + TSS region transcription start site region 94485
Tssr98401 10 80117986 to 80117990 4 - TSS region transcription start site region 98401
Tssr98402 10 80121754 to 80121767 13 - TSS region transcription start site region 98402
Tssr98403 10 80121795 to 80121802 7 - TSS region transcription start site region 98403
Tssr94486 10 80121939 to 80121950 11 + TSS region transcription start site region 94486
Cbarp 10 80130434 to 80140135 9701 - protein coding gene calcium channel, voltage-dependent, beta subunit associated regulatory protein
Cpgi1844 10 80131223 to 80132230 1007 CpG island CpG island 1844
Cpgi1845 10 80136368 to 80136726 358 CpG island CpG island 1845
Tssr98404 10 80136471 to 80136484 13 - TSS region transcription start site region 98404
Cpgi1846 10 80136973 to 80137505 532 CpG island CpG island 1846
Tssr98405 10 80137151 to 80137184 33 - TSS region transcription start site region 98405
Tssr98406 10 80137376 to 80137443 67 - TSS region transcription start site region 98406
Cpgi1847 10 80138274 to 80139808 1534 CpG island CpG island 1847
Atp5d 10 80138768 to 80145818 7050 + protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
Tssr98407 10 80139159 to 80139172 13 - TSS region transcription start site region 98407
Tssr98408 10 80139189 to 80139204 15 - TSS region transcription start site region 98408
Tssr98409 10 80139347 to 80139370 23 - TSS region transcription start site region 98409
Cpgi1848 10 80141239 to 80141695 456 CpG island CpG island 1848
Tssr98410 10 80141310 to 80141322 12 - TSS region transcription start site region 98410
Tssr98411 10 80141362 to 80141382 20 - TSS region transcription start site region 98411
Tssr94487 10 80141553 to 80141575 22 + TSS region transcription start site region 94487
Cpgi1849 10 80142162 to 80142698 536 CpG island CpG island 1849